Wall clock time and date at job start Wed Apr 1 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30861 * 125.41816 * 2 1 4 4 C 1.33316 * 109.68416 * 180.19790 * 3 2 1 5 5 C 1.36664 * 107.78765 * 359.55455 * 4 3 2 6 6 C 1.46763 * 126.84784 * 180.28705 * 5 4 3 7 7 O 1.21683 * 119.99702 * 354.89404 * 6 5 4 8 8 N 1.34779 * 120.00240 * 174.89102 * 6 5 4 9 9 C 1.46499 * 120.00111 * 184.90172 * 8 6 5 10 10 H 1.09004 * 110.54603 * 46.39789 * 9 8 6 11 11 C 1.54832 * 110.61374 * 283.53822 * 9 8 6 12 12 C 1.55845 * 103.51924 * 241.49161 * 11 9 8 13 13 H 1.08998 * 115.58718 * 158.88876 * 12 11 9 14 14 C 1.55849 * 105.03428 * 287.51572 * 12 11 9 15 15 C 1.56683 * 102.66582 * 72.20624 * 14 12 11 16 16 C 1.55842 * 103.67457 * 359.66383 * 15 14 12 17 17 H 1.08997 * 116.14970 * 159.46019 * 16 15 14 18 18 N 1.50648 * 101.03060 * 33.22538 * 16 15 14 19 19 C 1.46900 * 111.00161 * 189.76179 * 18 16 15 20 20 C 1.50703 * 109.47156 * 294.55939 * 19 18 16 21 21 O 1.21295 * 119.99674 * 1.76218 * 20 19 18 22 22 N 1.34770 * 120.00194 * 181.75494 * 20 19 18 23 23 C 1.37095 * 120.00099 * 184.78231 * 22 20 19 24 24 H 1.08006 * 120.00078 * 5.26097 * 23 22 20 25 25 C 1.38954 * 120.00181 * 185.26154 * 23 22 20 26 26 N 1.31406 * 119.99706 * 5.17347 * 25 23 22 27 27 Si 1.86800 * 119.99881 * 185.17803 * 25 23 22 28 28 H 1.48502 * 109.47482 * 5.00241 * 27 25 23 29 29 H 1.48497 * 109.47224 * 125.00459 * 27 25 23 30 30 H 1.48503 * 109.46961 * 245.00168 * 27 25 23 31 31 N 1.34493 * 125.41971 * 179.70582 * 2 1 3 32 32 H 0.96998 * 126.47327 * 0.02562 * 31 2 1 33 33 H 1.08999 * 109.47541 * 275.28381 * 1 2 3 34 34 H 1.09005 * 109.46838 * 35.28629 * 1 2 3 35 35 H 1.08997 * 109.47407 * 155.28353 * 1 2 3 36 36 H 1.08004 * 126.10807 * 179.81906 * 4 3 2 37 37 H 0.96995 * 119.99332 * 4.90529 * 8 6 5 38 38 H 1.09003 * 110.61739 * 359.97438 * 11 9 8 39 39 H 1.08998 * 110.61460 * 122.98133 * 11 9 8 40 40 H 1.08999 * 110.61750 * 190.23623 * 14 12 11 41 41 H 1.08998 * 110.60798 * 313.22062 * 14 12 11 42 42 H 1.08997 * 110.33442 * 241.19868 * 15 14 12 43 43 H 1.08998 * 110.73394 * 118.32222 * 15 14 12 44 44 H 1.09000 * 109.47213 * 54.56020 * 19 18 16 45 45 H 1.09006 * 109.47265 * 174.56382 * 19 18 16 46 46 H 0.96997 * 119.99745 * 4.78522 * 22 20 19 47 47 H 0.97003 * 120.00011 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7049 -0.0043 5 6 3.5975 -0.6608 0.0029 6 6 4.8028 -1.4982 0.0075 7 8 5.9013 -0.9839 -0.0890 8 7 4.6929 -2.8369 0.1185 9 6 5.8969 -3.6639 0.2311 10 1 6.5861 -3.2388 0.9609 11 6 6.5864 -3.8135 -1.1471 12 6 6.5371 -5.3480 -1.4145 13 1 6.6361 -5.6474 -2.4579 14 6 7.5828 -5.9627 -0.4360 15 6 6.8790 -5.8150 0.9561 16 6 5.5231 -5.1281 0.6123 17 1 4.7298 -5.2338 1.3523 18 7 5.2383 -5.7156 -0.7453 19 6 4.1050 -5.0353 -1.3862 20 6 2.8489 -5.2993 -0.5966 21 8 2.8989 -5.9600 0.4194 22 7 1.6700 -4.8012 -1.0192 23 6 0.5451 -4.9574 -0.2513 24 1 0.6184 -5.4037 0.7295 25 6 -0.6894 -4.5416 -0.7349 26 7 -0.7958 -4.0928 -1.9653 27 14 -2.1978 -4.6204 0.3643 28 1 -1.7941 -5.0439 1.7292 29 1 -2.8332 -3.2799 0.4297 30 1 -3.1651 -5.6001 -0.1922 31 7 2.2864 -1.0960 0.0056 32 1 1.9850 -2.0179 0.0100 33 1 -0.3634 0.0946 1.0233 34 1 -0.3633 0.8389 -0.5937 35 1 -0.3634 -0.9335 -0.4297 36 1 4.3978 1.3722 -0.0081 37 1 3.8166 -3.2527 0.1237 38 1 6.0322 -3.2727 -1.9142 39 1 7.6181 -3.4651 -1.0998 40 1 7.7553 -7.0134 -0.6691 41 1 8.5171 -5.4024 -0.4714 42 1 7.4732 -5.1827 1.6157 43 1 6.7104 -6.7921 1.4088 44 1 4.2957 -3.9626 -1.4176 45 1 3.9818 -5.4124 -2.4015 46 1 1.6176 -4.3322 -1.8666 47 1 -1.6575 -3.8021 -2.3028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110385188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:44 Heat of formation + Delta-G solvation = 2.140934 kcal Electronic energy + Delta-G solvation = -32653.627032 eV Core-core repulsion = 28451.332746 eV Total energy + Delta-G solvation = -4202.294286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.37554 -42.48650 -40.11096 -39.67196 -36.01353 -35.62932 -33.73180 -33.49314 -32.94528 -32.89745 -30.71087 -29.99418 -28.38002 -27.98418 -25.95319 -24.53008 -22.87865 -22.10907 -21.77646 -21.48102 -20.83066 -20.67172 -19.95176 -19.47765 -17.93829 -17.69472 -17.29477 -17.08489 -16.73156 -16.52000 -16.11686 -15.83355 -15.68452 -15.46858 -15.33227 -14.99016 -14.81004 -14.32600 -14.19544 -13.78350 -13.59264 -13.56825 -13.45820 -13.33746 -13.11142 -13.02393 -12.84362 -12.58051 -12.40084 -12.34026 -12.13048 -12.07524 -11.78210 -11.69796 -11.50757 -11.38540 -11.32663 -11.00563 -10.38947 -10.34380 -10.03914 -9.62659 -9.49828 -8.46561 -5.96668 0.12495 1.34402 1.45761 1.55656 1.63506 1.72560 1.86434 2.00437 2.13789 2.25818 2.68108 3.14811 3.17531 3.29204 3.50219 3.61723 3.67126 3.73345 3.94270 4.00967 4.14636 4.20919 4.23440 4.23945 4.33350 4.42510 4.45740 4.49575 4.52586 4.64921 4.69062 4.76064 4.81683 4.92601 5.00672 5.02993 5.08504 5.24353 5.29385 5.33868 5.42725 5.42995 5.68011 5.81451 6.01286 6.03699 6.14828 6.56028 6.75447 6.84255 7.11332 7.48413 8.04050 8.68884 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.005359 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.962699 B = 5223.686477 C = 7799.738576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.249 3.751 3 N -0.516 5.516 4 C 0.069 3.931 5 C -0.118 4.118 6 C 0.597 3.403 7 O -0.547 6.547 8 N -0.721 5.721 9 C 0.111 3.889 10 H 0.097 0.903 11 C -0.150 4.150 12 C 0.043 3.957 13 H 0.131 0.869 14 C -0.104 4.104 15 C -0.107 4.107 16 C 0.043 3.957 17 H 0.101 0.899 18 N -0.483 5.483 19 C 0.010 3.990 20 C 0.436 3.564 21 O -0.606 6.606 22 N -0.567 5.567 23 C -0.331 4.331 24 H 0.080 0.920 25 C 0.004 3.996 26 N -0.907 5.907 27 Si 0.974 3.026 28 H -0.276 1.276 29 H -0.259 1.259 30 H -0.284 1.284 31 N -0.545 5.545 32 H 0.427 0.573 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.198 0.802 37 H 0.397 0.603 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.393 0.607 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.133 3.764 0.592 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.015 4.015 3 N -0.236 5.236 4 C -0.086 4.086 5 C -0.234 4.234 6 C 0.385 3.615 7 O -0.425 6.425 8 N -0.373 5.373 9 C 0.005 3.995 10 H 0.114 0.886 11 C -0.190 4.190 12 C -0.065 4.065 13 H 0.149 0.851 14 C -0.142 4.142 15 C -0.146 4.146 16 C -0.066 4.066 17 H 0.119 0.881 18 N -0.205 5.205 19 C -0.122 4.122 20 C 0.223 3.777 21 O -0.491 6.491 22 N -0.205 5.205 23 C -0.460 4.460 24 H 0.098 0.902 25 C -0.198 4.198 26 N -0.547 5.547 27 Si 0.799 3.201 28 H -0.201 1.201 29 H -0.183 1.183 30 H -0.210 1.210 31 N -0.149 5.149 32 H 0.267 0.733 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.214 0.786 37 H 0.234 0.766 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.227 0.773 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.358 3.909 1.104 11.126 hybrid contribution -1.389 -0.575 -0.145 1.510 sum 8.969 3.334 0.959 9.617 Atomic orbital electron populations 1.20497 0.82291 1.05238 1.05515 1.24070 0.97106 0.81027 0.99272 1.70233 1.02172 1.28564 1.22662 1.22921 0.95281 0.91125 0.99233 1.21181 0.84111 0.96306 1.21807 1.16964 0.86983 0.81602 0.75947 1.90784 1.26587 1.73668 1.51460 1.46536 1.10749 1.06085 1.73953 1.23071 0.86047 0.91405 0.98938 0.88550 1.23662 1.02273 0.97925 0.95121 1.24734 0.89560 0.92232 0.99978 0.85141 1.22939 0.96773 1.01973 0.92470 1.22847 0.92640 1.00872 0.98216 1.24758 0.98894 0.89572 0.93380 0.88117 1.67525 1.01470 1.49240 1.02310 1.22437 0.90672 1.00008 0.99077 1.20530 0.85523 0.83827 0.87838 1.90511 1.86779 1.43027 1.28809 1.41957 1.06738 1.50378 1.21429 1.19618 0.85798 1.40531 1.00102 0.90198 1.25799 1.00571 0.96279 0.97121 1.69689 1.27266 1.42550 1.15167 0.85148 0.78075 0.78749 0.78143 1.20106 1.18335 1.20960 1.43478 1.05847 1.11039 1.54576 0.73334 0.87855 0.87282 0.90235 0.78554 0.76611 0.92283 0.88409 0.90245 0.88518 0.89430 0.90895 0.90343 0.88225 0.77348 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.85 10.51 71.23 0.75 -1.10 16 2 C 0.25 7.54 8.12 138.20 1.12 8.66 16 3 N -0.52 -16.41 11.20 -187.40 -2.10 -18.51 16 4 C 0.07 2.15 11.66 84.10 0.98 3.13 16 5 C -0.12 -3.82 7.07 40.01 0.28 -3.54 16 6 C 0.60 19.60 7.67 86.47 0.66 20.26 16 7 O -0.55 -19.36 16.65 -4.29 -0.07 -19.44 16 8 N -0.72 -22.30 3.58 -438.81 -1.57 -23.86 16 9 C 0.11 3.02 2.45 46.60 0.11 3.14 16 10 H 0.10 2.56 7.72 -2.38 -0.02 2.54 16 11 C -0.15 -3.53 5.16 32.20 0.17 -3.36 16 12 C 0.04 0.94 4.91 46.15 0.23 1.17 16 13 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 14 C -0.10 -1.86 6.57 32.87 0.22 -1.64 16 15 C -0.11 -2.34 6.48 32.86 0.21 -2.13 16 16 C 0.04 1.27 3.83 46.14 0.18 1.44 16 17 H 0.10 3.70 6.49 -2.39 -0.02 3.69 16 18 N -0.48 -14.63 5.40 -808.85 -4.37 -19.00 16 19 C 0.01 0.34 4.85 85.56 0.42 0.75 16 20 C 0.44 18.43 6.08 87.66 0.53 18.97 16 21 O -0.61 -29.95 13.99 -3.08 -0.04 -29.99 16 22 N -0.57 -25.03 5.27 -306.98 -1.62 -26.65 16 23 C -0.33 -16.20 9.66 84.04 0.81 -15.39 16 24 H 0.08 4.27 7.20 -2.91 -0.02 4.25 16 25 C 0.00 0.19 5.50 84.93 0.47 0.66 16 26 N -0.91 -42.57 13.08 21.66 0.28 -42.29 16 27 Si 0.97 37.75 29.56 68.60 2.03 39.77 16 28 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 29 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 30 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 31 N -0.54 -17.26 6.07 -176.12 -1.07 -18.33 16 32 H 0.43 14.15 8.33 -92.71 -0.77 13.37 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 34 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 36 H 0.20 5.26 8.06 -2.91 -0.02 5.24 16 37 H 0.40 13.34 4.89 -92.71 -0.45 12.88 16 38 H 0.06 1.56 7.12 -2.39 -0.02 1.54 16 39 H 0.10 1.99 7.80 -2.39 -0.02 1.97 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 1.29 7.81 -2.39 -0.02 1.27 16 42 H 0.09 1.57 7.82 -2.39 -0.02 1.55 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 2.48 3.50 -2.39 -0.01 2.47 16 45 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 46 H 0.39 16.85 7.94 -92.71 -0.74 16.11 16 47 H 0.28 12.36 8.31 -92.71 -0.77 11.59 16 Total: -1.00 -60.89 376.63 -2.30 -63.19 By element: Atomic # 1 Polarization: 65.01 SS G_CDS: -0.91 Total: 64.10 kcal Atomic # 6 Polarization: 23.87 SS G_CDS: 7.14 Total: 31.01 kcal Atomic # 7 Polarization: -138.20 SS G_CDS: -10.44 Total: -148.64 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -0.11 Total: -49.43 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.77 kcal Total: -60.89 -2.30 -63.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110385188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.328 kcal (2) G-P(sol) polarization free energy of solvation -60.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds