Wall clock time and date at job start Wed Apr 1 2020 04:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47420 * 2 1 4 4 N 1.30441 * 125.99223 * 270.17856 * 3 2 1 5 5 N 1.39932 * 108.89868 * 180.29095 * 4 3 2 6 6 H 0.97001 * 125.75483 * 179.67971 * 5 4 3 7 7 C 1.34251 * 108.49261 * 359.71121 * 5 4 3 8 8 C 1.38041 * 107.41710 * 0.02562 * 7 5 4 9 9 C 1.47436 * 126.41531 * 179.97438 * 8 7 5 10 10 O 1.21610 * 119.99867 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99895 * 0.02636 * 9 8 7 12 12 C 1.46496 * 119.99613 * 180.02562 * 11 9 8 13 13 H 1.09004 * 115.51946 * 350.41461 * 12 11 9 14 14 C 1.53005 * 117.43955 * 204.99503 * 12 11 9 15 15 H 1.08994 * 119.52946 * 5.64936 * 14 12 11 16 16 C 1.54384 * 118.12447 * 160.68397 * 14 12 11 17 17 N 1.48561 * 104.59427 * 87.23262 * 16 14 12 18 18 C 1.46899 * 111.00023 * 200.95825 * 17 16 14 19 19 C 1.50697 * 109.47043 * 169.99742 * 18 17 16 20 20 O 1.21298 * 120.00264 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00080 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00460 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99355 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00350 * 180.02562 * 22 21 19 25 25 N 1.31407 * 119.99873 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99704 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46838 * 90.00358 * 26 24 22 28 28 H 1.48503 * 109.46979 * 209.99866 * 26 24 22 29 29 H 1.48495 * 109.47029 * 330.00034 * 26 24 22 30 30 C 1.48562 * 104.22135 * 320.51541 * 17 16 14 31 31 C 1.53003 * 117.44528 * 135.77115 * 12 11 9 32 32 H 1.09001 * 119.52271 * 355.90591 * 31 12 11 33 33 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47010 * 299.99842 * 1 2 3 35 35 H 1.08999 * 109.46907 * 60.00112 * 1 2 3 36 36 H 1.09004 * 109.47450 * 239.99996 * 2 1 3 37 37 H 1.09004 * 109.47345 * 120.00046 * 2 1 3 38 38 H 1.08002 * 126.29299 * 180.02562 * 7 5 4 39 39 H 0.96996 * 119.99871 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.40817 * 206.00762 * 16 14 12 41 41 H 1.08996 * 110.41163 * 328.45512 * 16 14 12 42 42 H 1.09001 * 109.46861 * 289.99793 * 18 17 16 43 43 H 1.08995 * 109.47197 * 50.00037 * 18 17 16 44 44 H 0.97003 * 119.99792 * 359.97438 * 21 19 18 45 45 H 0.97006 * 119.99775 * 179.97438 * 25 24 22 46 46 H 1.08999 * 110.41310 * 158.26520 * 30 17 16 47 47 H 1.09002 * 110.40991 * 280.58796 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2848 2.1446 -1.0554 5 7 2.7383 3.4030 -0.6441 6 1 2.9998 4.1305 -1.2300 7 6 2.7510 3.4332 0.6980 8 6 2.3096 2.2034 1.1433 9 6 2.1611 1.7832 2.5486 10 8 1.7600 0.6652 2.8098 11 7 2.4697 2.6380 3.5438 12 6 2.3226 2.2202 4.9402 13 1 1.8086 1.2714 5.0948 14 6 2.1085 3.3168 5.9855 15 1 1.9791 4.3495 5.6619 16 6 1.5090 2.9144 7.3501 17 7 2.6818 2.5202 8.1725 18 6 2.2746 1.6614 9.2926 19 6 3.4994 1.0845 9.9543 20 8 4.6031 1.3618 9.5345 21 7 3.3686 0.2612 11.0133 22 6 4.4829 -0.2634 11.6157 23 1 5.4655 -0.0171 11.2413 24 6 4.3480 -1.1126 12.7072 25 7 5.4161 -1.6157 13.2841 26 14 2.6483 -1.5392 13.3542 27 1 2.1457 -2.7533 12.6624 28 1 2.7251 -1.7976 14.8145 29 1 1.7232 -0.4058 13.0999 30 6 3.5589 1.7824 7.2274 31 6 3.4569 2.5720 5.9048 32 1 4.3569 3.0538 5.5227 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3633 0.5138 -0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 3.0514 4.2666 1.3158 39 1 2.7899 3.5296 3.3355 40 1 0.9941 3.7613 7.8037 41 1 0.8271 2.0723 7.2323 42 1 1.7138 2.2514 10.0175 43 1 1.6474 0.8516 8.9202 44 1 2.4860 0.0402 11.3498 45 1 5.3219 -2.2083 14.0464 46 1 4.5873 1.7768 7.5886 47 1 3.1989 0.7625 7.0920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114501547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:24 Heat of formation + Delta-G solvation = 50.656937 kcal Electronic energy + Delta-G solvation = -29398.980401 eV Core-core repulsion = 25198.789928 eV Total energy + Delta-G solvation = -4200.190474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88811 -40.34749 -39.03118 -38.04518 -35.27054 -34.49475 -33.93540 -32.78899 -31.67521 -30.70236 -30.55908 -28.27114 -27.69770 -24.81217 -24.35555 -23.75356 -22.24168 -21.04530 -20.70776 -20.29303 -19.83866 -19.36499 -18.79703 -18.19065 -16.84846 -16.80042 -15.86934 -15.69414 -15.25293 -15.10737 -14.98554 -14.78272 -14.49051 -14.36887 -14.28018 -13.72297 -13.57189 -13.35517 -13.20511 -12.92526 -12.64609 -12.49551 -12.34318 -12.03864 -11.87694 -11.79350 -11.54154 -11.39104 -11.33659 -11.11520 -11.06175 -10.86183 -10.58673 -10.12672 -10.04937 -9.97836 -9.97272 -9.55526 -9.33217 -8.87487 -8.51852 -8.20433 -8.06363 -6.31204 -3.82624 1.01964 1.75322 2.19915 2.76893 3.03443 3.05352 3.07694 3.15922 3.65740 3.72040 3.99439 4.04562 4.10800 4.13278 4.51575 4.62475 4.65702 4.76086 4.78844 4.89433 4.92411 5.09464 5.14066 5.16784 5.21574 5.32295 5.33769 5.53245 5.62020 5.69391 5.71277 5.72875 5.79546 5.85015 5.90629 5.95787 6.02182 6.09675 6.12939 6.33265 6.58771 6.59090 7.04611 7.05831 7.14371 7.27409 7.57771 8.02452 8.14310 8.59240 8.94769 9.41899 9.81804 10.81730 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.001841 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.835081 B =15202.885974 C =15739.372718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C 0.142 3.858 4 N -0.298 5.298 5 N -0.461 5.461 6 H 0.445 0.555 7 C 0.105 3.895 8 C -0.285 4.285 9 C 0.598 3.402 10 O -0.532 6.532 11 N -0.698 5.698 12 C 0.108 3.892 13 H 0.134 0.866 14 C -0.171 4.171 15 H 0.117 0.883 16 C 0.060 3.940 17 N -0.487 5.487 18 C 0.031 3.969 19 C 0.451 3.549 20 O -0.563 6.563 21 N -0.588 5.588 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.880 5.880 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 C 0.064 3.936 31 C -0.162 4.162 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.186 0.814 39 H 0.397 0.603 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.371 0.629 45 H 0.273 0.727 46 H 0.122 0.878 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 12.023 -26.008 30.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.027 4.027 4 N -0.120 5.120 5 N -0.165 5.165 6 H 0.289 0.711 7 C -0.048 4.048 8 C -0.300 4.300 9 C 0.386 3.614 10 O -0.408 6.408 11 N -0.347 5.347 12 C 0.001 3.999 13 H 0.152 0.848 14 C -0.191 4.191 15 H 0.135 0.865 16 C -0.068 4.068 17 N -0.211 5.211 18 C -0.101 4.101 19 C 0.237 3.763 20 O -0.445 6.445 21 N -0.227 5.227 22 C -0.433 4.433 23 H 0.138 0.862 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.194 1.194 30 C -0.063 4.063 31 C -0.182 4.182 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.203 0.797 39 H 0.231 0.769 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.140 0.860 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.473 11.733 -26.958 31.211 hybrid contribution -1.304 0.068 0.923 1.599 sum -11.777 11.801 -26.035 30.916 Atomic orbital electron populations 1.21617 0.93840 1.02289 1.01925 1.20169 0.96636 0.87868 1.04388 1.22526 0.94618 0.96999 0.88521 1.77210 1.21729 0.90642 1.22388 1.46127 1.51235 1.13652 1.05436 0.71068 1.23155 0.97076 0.98749 0.85832 1.20257 1.19696 0.95656 0.94400 1.17189 0.76571 0.84404 0.83279 1.90775 1.46124 1.19901 1.84018 1.45089 1.68112 1.16863 1.04654 1.21787 1.01530 0.98823 0.77735 0.84800 1.23808 1.01348 0.97876 0.96074 0.86496 1.22687 0.92963 1.00471 0.90710 1.65416 1.11819 1.36887 1.07007 1.22134 0.96980 0.96016 0.94972 1.19589 0.90094 0.83241 0.83392 1.90491 1.27073 1.62266 1.64684 1.42193 1.08409 1.43400 1.28712 1.19427 0.88151 1.24605 1.11139 0.86225 1.25044 0.97564 0.96927 0.96623 1.69621 1.28128 1.31808 1.22454 0.86676 0.83921 0.79197 0.79644 1.19611 1.20158 1.19445 1.22866 1.02127 0.93741 0.87565 1.24120 0.92941 1.03200 0.97978 0.86487 0.91715 0.92164 0.93001 0.90466 0.87883 0.79712 0.76869 0.89505 0.93591 0.88864 0.93019 0.79655 0.91599 0.85975 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.89 37.15 0.37 -0.82 16 2 C -0.05 -0.48 5.97 -27.88 -0.17 -0.65 16 3 C 0.14 1.42 6.52 -82.02 -0.53 0.88 16 4 N -0.30 -2.78 12.63 33.90 0.43 -2.36 16 5 N -0.46 -2.54 7.29 30.85 0.22 -2.32 16 6 H 0.44 0.84 8.96 -182.72 -1.64 -0.80 16 7 C 0.11 0.54 11.52 -16.57 -0.19 0.35 16 8 C -0.28 -2.57 6.13 -105.06 -0.64 -3.22 16 9 C 0.60 6.53 7.81 -12.51 -0.10 6.44 16 10 O -0.53 -7.67 14.49 5.27 0.08 -7.59 16 11 N -0.70 -6.10 5.55 -54.87 -0.30 -6.41 16 12 C 0.11 1.18 5.98 -67.93 -0.41 0.77 16 13 H 0.13 1.74 7.40 -51.93 -0.38 1.36 16 14 C -0.17 -1.76 7.05 -89.23 -0.63 -2.39 16 15 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 16 C 0.06 0.71 6.30 -2.18 -0.01 0.70 16 17 N -0.49 -7.72 5.33 -231.41 -1.23 -8.95 16 18 C 0.03 0.51 5.55 -4.98 -0.03 0.49 16 19 C 0.45 10.13 7.50 -10.99 -0.08 10.05 16 20 O -0.56 -14.62 13.24 5.54 0.07 -14.54 16 21 N -0.59 -13.94 5.09 -10.96 -0.06 -13.99 16 22 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 26 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 30 C 0.06 1.04 5.12 -2.18 -0.01 1.03 16 31 C -0.16 -1.98 7.05 -89.24 -0.63 -2.61 16 32 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.11 6.56 -51.93 -0.34 0.77 16 38 H 0.19 0.13 7.46 -52.49 -0.39 -0.26 16 39 H 0.40 2.13 7.75 -40.82 -0.32 1.81 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.53 7.82 -51.93 -0.41 0.12 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 44 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.12 2.40 6.05 -51.93 -0.31 2.08 16 47 H 0.04 0.70 7.99 -51.93 -0.42 0.29 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -36.43 388.54 -9.98 -46.40 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -7.79 Total: 10.82 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -3.31 Total: 3.34 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.17 Total: -58.93 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.15 Total: -22.13 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.43 -9.98 -46.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114501547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.061 kcal (2) G-P(sol) polarization free energy of solvation -36.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds