Wall clock time and date at job start Wed Apr 1 2020 04:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47420 * 2 1 4 4 N 1.30441 * 125.99223 * 270.17856 * 3 2 1 5 5 N 1.39932 * 108.89868 * 180.29095 * 4 3 2 6 6 H 0.97001 * 125.75483 * 179.67971 * 5 4 3 7 7 C 1.34251 * 108.49261 * 359.71121 * 5 4 3 8 8 C 1.38041 * 107.41710 * 0.02562 * 7 5 4 9 9 C 1.47436 * 126.41531 * 179.97438 * 8 7 5 10 10 O 1.21610 * 119.99867 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99895 * 0.02636 * 9 8 7 12 12 C 1.46496 * 119.99613 * 180.02562 * 11 9 8 13 13 H 1.09004 * 115.51946 * 350.41461 * 12 11 9 14 14 C 1.53005 * 117.43955 * 204.99503 * 12 11 9 15 15 H 1.08994 * 119.52946 * 5.64936 * 14 12 11 16 16 C 1.54384 * 118.12447 * 160.68397 * 14 12 11 17 17 N 1.48561 * 104.59427 * 87.23262 * 16 14 12 18 18 C 1.46899 * 111.00023 * 200.95825 * 17 16 14 19 19 C 1.50697 * 109.47043 * 169.99742 * 18 17 16 20 20 O 1.21298 * 120.00264 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00080 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00460 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99355 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00350 * 180.02562 * 22 21 19 25 25 N 1.31407 * 119.99873 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99704 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46838 * 90.00358 * 26 24 22 28 28 H 1.48503 * 109.46979 * 209.99866 * 26 24 22 29 29 H 1.48495 * 109.47029 * 330.00034 * 26 24 22 30 30 C 1.48562 * 104.22135 * 320.51541 * 17 16 14 31 31 C 1.53003 * 117.44528 * 135.77115 * 12 11 9 32 32 H 1.09001 * 119.52271 * 355.90591 * 31 12 11 33 33 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47010 * 299.99842 * 1 2 3 35 35 H 1.08999 * 109.46907 * 60.00112 * 1 2 3 36 36 H 1.09004 * 109.47450 * 239.99996 * 2 1 3 37 37 H 1.09004 * 109.47345 * 120.00046 * 2 1 3 38 38 H 1.08002 * 126.29299 * 180.02562 * 7 5 4 39 39 H 0.96996 * 119.99871 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.40817 * 206.00762 * 16 14 12 41 41 H 1.08996 * 110.41163 * 328.45512 * 16 14 12 42 42 H 1.09001 * 109.46861 * 289.99793 * 18 17 16 43 43 H 1.08995 * 109.47197 * 50.00037 * 18 17 16 44 44 H 0.97003 * 119.99792 * 359.97438 * 21 19 18 45 45 H 0.97006 * 119.99775 * 179.97438 * 25 24 22 46 46 H 1.08999 * 110.41310 * 158.26520 * 30 17 16 47 47 H 1.09002 * 110.40991 * 280.58796 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2848 2.1446 -1.0554 5 7 2.7383 3.4030 -0.6441 6 1 2.9998 4.1305 -1.2300 7 6 2.7510 3.4332 0.6980 8 6 2.3096 2.2034 1.1433 9 6 2.1611 1.7832 2.5486 10 8 1.7600 0.6652 2.8098 11 7 2.4697 2.6380 3.5438 12 6 2.3226 2.2202 4.9402 13 1 1.8086 1.2714 5.0948 14 6 2.1085 3.3168 5.9855 15 1 1.9791 4.3495 5.6619 16 6 1.5090 2.9144 7.3501 17 7 2.6818 2.5202 8.1725 18 6 2.2746 1.6614 9.2926 19 6 3.4994 1.0845 9.9543 20 8 4.6031 1.3618 9.5345 21 7 3.3686 0.2612 11.0133 22 6 4.4829 -0.2634 11.6157 23 1 5.4655 -0.0171 11.2413 24 6 4.3480 -1.1126 12.7072 25 7 5.4161 -1.6157 13.2841 26 14 2.6483 -1.5392 13.3542 27 1 2.1457 -2.7533 12.6624 28 1 2.7251 -1.7976 14.8145 29 1 1.7232 -0.4058 13.0999 30 6 3.5589 1.7824 7.2274 31 6 3.4569 2.5720 5.9048 32 1 4.3569 3.0538 5.5227 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3633 0.5138 -0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 3.0514 4.2666 1.3158 39 1 2.7899 3.5296 3.3355 40 1 0.9941 3.7613 7.8037 41 1 0.8271 2.0723 7.2323 42 1 1.7138 2.2514 10.0175 43 1 1.6474 0.8516 8.9202 44 1 2.4860 0.0402 11.3498 45 1 5.3219 -2.2083 14.0464 46 1 4.5873 1.7768 7.5886 47 1 3.1989 0.7625 7.0920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114501547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:23 Heat of formation + Delta-G solvation = 19.603751 kcal Electronic energy + Delta-G solvation = -29400.326969 eV Core-core repulsion = 25198.789928 eV Total energy + Delta-G solvation = -4201.537041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.47185 -41.39985 -40.25359 -39.44673 -36.42380 -35.81676 -35.15539 -33.87787 -33.65541 -31.31478 -31.23563 -29.34622 -29.11666 -26.47420 -25.07412 -24.64966 -23.27631 -22.01944 -21.49637 -21.32882 -21.17216 -20.51236 -20.11072 -19.36424 -17.80300 -17.58904 -17.45996 -16.81354 -16.39580 -16.28053 -16.26995 -15.69811 -15.48011 -15.27702 -15.12864 -14.98612 -14.86146 -14.79153 -14.39605 -14.10471 -13.90033 -13.71899 -13.30382 -13.28836 -13.17162 -12.96728 -12.49900 -12.45827 -12.43740 -12.33692 -12.16508 -11.98029 -11.86965 -11.79886 -11.48944 -11.06430 -10.90102 -10.57562 -10.29965 -10.23017 -10.00095 -9.62371 -9.37512 -8.41387 -6.02057 0.51906 1.05267 1.30260 1.35436 1.44356 1.75232 1.93832 2.02173 2.22905 2.28568 2.66327 2.84361 3.14730 3.21730 3.41469 3.66951 3.72569 3.74004 3.88518 4.07957 4.08946 4.16042 4.22744 4.32931 4.37441 4.38858 4.45110 4.49909 4.54161 4.59764 4.67171 4.70975 4.88261 5.02642 5.04552 5.14970 5.18319 5.25955 5.27159 5.42687 5.50767 5.53346 5.81948 5.89826 6.03971 6.26062 6.44817 6.58970 6.64614 6.88128 7.29207 7.38702 7.95623 8.76077 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.001841 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.835081 B =15202.885974 C =15739.372718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 C 0.124 3.876 4 N -0.325 5.325 5 N -0.446 5.446 6 H 0.462 0.538 7 C 0.141 3.859 8 C -0.320 4.320 9 C 0.596 3.404 10 O -0.578 6.578 11 N -0.681 5.681 12 C 0.114 3.886 13 H 0.110 0.890 14 C -0.141 4.141 15 H 0.152 0.848 16 C 0.056 3.944 17 N -0.504 5.504 18 C 0.041 3.959 19 C 0.448 3.552 20 O -0.605 6.605 21 N -0.590 5.590 22 C -0.327 4.327 23 H 0.056 0.944 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.259 1.259 28 H -0.274 1.274 29 H -0.230 1.230 30 C 0.065 3.935 31 C -0.175 4.175 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.238 0.762 39 H 0.417 0.583 40 H 0.113 0.887 41 H 0.053 0.947 42 H 0.126 0.874 43 H 0.077 0.923 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.077 0.923 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.700 14.875 -27.078 34.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.044 4.044 4 N -0.148 5.148 5 N -0.152 5.152 6 H 0.310 0.690 7 C -0.014 4.014 8 C -0.335 4.335 9 C 0.385 3.615 10 O -0.458 6.458 11 N -0.331 5.331 12 C 0.007 3.993 13 H 0.128 0.872 14 C -0.161 4.161 15 H 0.170 0.830 16 C -0.071 4.071 17 N -0.229 5.229 18 C -0.090 4.090 19 C 0.236 3.764 20 O -0.489 6.489 21 N -0.232 5.232 22 C -0.456 4.456 23 H 0.074 0.926 24 C -0.214 4.214 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.184 1.184 28 H -0.199 1.199 29 H -0.153 1.153 30 C -0.063 4.063 31 C -0.195 4.195 32 H 0.145 0.855 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.254 0.746 39 H 0.255 0.745 40 H 0.131 0.869 41 H 0.072 0.928 42 H 0.144 0.856 43 H 0.095 0.905 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.871 14.656 -28.083 34.581 hybrid contribution -0.084 -0.738 1.145 1.365 sum -13.955 13.918 -26.938 33.378 Atomic orbital electron populations 1.21546 0.93356 1.02705 1.01295 1.20109 0.97096 0.88341 1.03628 1.22610 0.95161 0.97262 0.89350 1.77138 1.22807 0.92213 1.22639 1.46173 1.49858 1.12995 1.06136 0.68957 1.23809 0.93497 0.98336 0.85720 1.20200 1.22731 0.97505 0.93062 1.17508 0.75767 0.83909 0.84280 1.90754 1.48355 1.21927 1.84726 1.44855 1.67522 1.17501 1.03246 1.21494 1.00289 0.98640 0.78898 0.87208 1.23932 0.98321 0.99068 0.94795 0.83000 1.22847 0.91632 1.01644 0.90952 1.65413 1.13791 1.36309 1.07337 1.22095 0.93856 0.97317 0.95753 1.20835 0.91630 0.81649 0.82249 1.90500 1.29731 1.63185 1.65519 1.42026 1.07871 1.44031 1.29276 1.18994 0.87464 1.26519 1.12599 0.92574 1.26115 1.03374 0.95848 0.96109 1.69803 1.31629 1.32722 1.23275 0.85380 0.77391 0.80354 0.78517 1.18362 1.19930 1.15318 1.22592 0.99807 0.93886 0.90038 1.23920 0.94607 1.04076 0.96940 0.85486 0.90831 0.93710 0.92461 0.89796 0.89939 0.74599 0.74479 0.86924 0.92833 0.85640 0.90500 0.77517 0.91157 0.90514 0.95792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.89 71.98 0.71 -1.59 16 2 C -0.05 -1.03 5.97 29.85 0.18 -0.85 16 3 C 0.12 2.43 6.52 43.52 0.28 2.71 16 4 N -0.33 -5.66 12.63 -46.67 -0.59 -6.25 16 5 N -0.45 -3.56 7.29 -56.32 -0.41 -3.97 16 6 H 0.46 0.10 8.96 -213.43 -1.91 -1.81 16 7 C 0.14 0.93 11.52 84.28 0.97 1.90 16 8 C -0.32 -5.28 6.13 -20.15 -0.12 -5.41 16 9 C 0.60 12.52 7.81 86.67 0.68 13.20 16 10 O -0.58 -17.22 14.49 -4.06 -0.06 -17.28 16 11 N -0.68 -10.27 5.55 -445.78 -2.48 -12.74 16 12 C 0.11 2.30 5.98 45.00 0.27 2.57 16 13 H 0.11 2.84 7.40 -2.39 -0.02 2.83 16 14 C -0.14 -2.41 7.05 -9.90 -0.07 -2.48 16 15 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 16 C 0.06 1.13 6.30 86.45 0.54 1.68 16 17 N -0.50 -15.18 5.33 -886.05 -4.73 -19.91 16 18 C 0.04 1.29 5.55 85.56 0.47 1.77 16 19 C 0.45 20.47 7.50 87.66 0.66 21.13 16 20 O -0.61 -33.31 13.24 -3.08 -0.04 -33.35 16 21 N -0.59 -28.17 5.09 -306.98 -1.56 -29.74 16 22 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 23 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 24 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 25 N -0.93 -56.77 13.96 21.66 0.30 -56.47 16 26 Si 0.96 39.21 27.74 68.60 1.90 41.11 16 27 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 29 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 30 C 0.06 2.15 5.12 86.45 0.44 2.59 16 31 C -0.17 -4.07 7.05 -9.90 -0.07 -4.14 16 32 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.08 1.95 6.56 -2.39 -0.02 1.93 16 38 H 0.24 -1.12 7.46 -2.91 -0.02 -1.15 16 39 H 0.42 2.71 7.75 -92.71 -0.72 1.99 16 40 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.05 1.04 7.82 -2.39 -0.02 1.02 16 42 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.08 2.07 7.88 -2.39 -0.02 2.05 16 44 H 0.39 15.41 5.76 -92.71 -0.53 14.87 16 45 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 46 H 0.08 3.25 6.05 -2.39 -0.01 3.23 16 47 H 0.02 0.85 7.99 -2.39 -0.02 0.83 16 Total: -1.00 -89.80 388.54 -3.57 -93.37 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -2.18 Total: 31.00 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 6.27 Total: 14.22 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -9.46 Total: -129.07 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.10 Total: -50.63 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.11 kcal Total: -89.80 -3.57 -93.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114501547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.974 kcal (2) G-P(sol) polarization free energy of solvation -89.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds