Wall clock time and date at job start Wed Apr 1 2020 04:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30854 * 125.41746 * 2 1 4 4 C 1.33318 * 109.68590 * 180.02562 * 3 2 1 5 5 C 1.36661 * 107.78510 * 359.72985 * 4 3 2 6 6 C 1.46768 * 126.84962 * 180.30128 * 5 4 3 7 7 O 1.21681 * 120.00279 * 185.50441 * 6 5 4 8 8 N 1.34781 * 119.99612 * 5.50724 * 6 5 4 9 9 C 1.46494 * 119.99934 * 185.13870 * 8 6 5 10 10 H 1.09002 * 115.51923 * 350.58708 * 9 8 6 11 11 C 1.52998 * 117.44571 * 205.16257 * 9 8 6 12 12 H 1.08997 * 119.52414 * 4.08877 * 11 9 8 13 13 C 1.54375 * 118.12916 * 159.13405 * 11 9 8 14 14 N 1.48563 * 104.59582 * 87.23171 * 13 11 9 15 15 C 1.46904 * 111.00002 * 200.96243 * 14 13 11 16 16 C 1.50695 * 109.47122 * 169.99832 * 15 14 13 17 17 O 1.21296 * 120.00324 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99868 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99994 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99998 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99910 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00098 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46693 * 60.00101 * 23 21 19 25 25 H 1.48502 * 109.47331 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47199 * 300.00373 * 23 21 19 27 27 C 1.48557 * 104.22037 * 320.51404 * 14 13 11 28 28 C 1.53001 * 117.44451 * 135.99937 * 9 8 6 29 29 H 1.09000 * 119.52513 * 355.91819 * 28 9 8 30 30 N 1.34497 * 125.41569 * 180.02562 * 2 1 3 31 31 C 1.46494 * 126.47354 * 359.97438 * 30 2 1 32 32 H 1.08998 * 109.46704 * 269.97471 * 1 2 3 33 33 H 1.08997 * 109.47275 * 29.97407 * 1 2 3 34 34 H 1.08997 * 109.46972 * 149.97491 * 1 2 3 35 35 H 1.08004 * 126.10834 * 180.02562 * 4 3 2 36 36 H 0.97001 * 119.99683 * 5.14180 * 8 6 5 37 37 H 1.09000 * 110.41367 * 206.00359 * 13 11 9 38 38 H 1.08997 * 110.41311 * 328.44873 * 13 11 9 39 39 H 1.09000 * 109.46730 * 289.99818 * 15 14 13 40 40 H 1.09002 * 109.47366 * 49.99084 * 15 14 13 41 41 H 0.97001 * 119.99772 * 0.02562 * 18 16 15 42 42 H 0.97000 * 119.99700 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.41468 * 158.26765 * 27 14 13 44 44 H 1.09001 * 110.41513 * 280.58873 * 27 14 13 45 45 H 1.08997 * 109.47364 * 85.65359 * 31 30 2 46 46 H 1.09004 * 109.46726 * 205.65000 * 31 30 2 47 47 H 1.08998 * 109.47114 * 325.64999 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5976 -0.6608 0.0052 6 6 4.8028 -1.4983 0.0130 7 8 4.7043 -2.7073 -0.0835 8 7 6.0188 -0.9282 0.1271 9 6 7.2263 -1.7510 0.0219 10 1 7.0610 -2.8284 0.0121 11 6 8.4915 -1.2380 0.7126 12 1 8.4458 -0.3273 1.3097 13 6 9.6032 -2.2563 1.0448 14 7 10.4367 -2.3147 -0.1836 15 6 11.2172 -3.5583 -0.2317 16 6 11.8549 -3.6990 -1.5897 17 8 11.6765 -2.8473 -2.4348 18 7 12.6236 -4.7712 -1.8655 19 6 13.2034 -4.8995 -3.1011 20 1 13.0438 -4.1416 -3.8537 21 6 13.9954 -6.0051 -3.3855 22 7 14.1883 -6.9281 -2.4703 23 14 14.7848 -6.1802 -5.0695 24 1 15.6815 -5.0229 -5.3185 25 1 15.5745 -7.4370 -5.1178 26 1 13.7267 -6.2195 -6.1106 27 6 9.4527 -2.2604 -1.2952 28 6 8.3789 -1.2068 -0.8243 29 1 8.2495 -0.2728 -1.3712 30 7 2.2865 -1.0961 -0.0005 31 6 1.8311 -2.4885 -0.0006 32 1 -0.3633 -0.0005 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8897 -0.5142 35 1 4.3978 1.3722 -0.0003 36 1 6.0943 0.0269 0.2788 37 1 10.1966 -1.9090 1.8905 38 1 9.1716 -3.2342 1.2581 39 1 11.9933 -3.5299 0.5331 40 1 10.5588 -4.4078 -0.0496 41 1 12.7660 -5.4525 -1.1898 42 1 14.7409 -7.7001 -2.6690 43 1 9.9327 -1.9163 -2.2114 44 1 8.9990 -3.2395 -1.4495 45 1 1.6437 -2.8094 -1.0252 46 1 2.5989 -3.1218 0.4439 47 1 0.9120 -2.5702 0.5796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114730769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:15 Heat of formation + Delta-G solvation = 40.904397 kcal Electronic energy + Delta-G solvation = -29276.236646 eV Core-core repulsion = 25075.623270 eV Total energy + Delta-G solvation = -4200.613376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.68921 -40.34165 -39.12523 -37.91922 -35.33969 -34.47475 -33.90086 -32.92821 -32.03132 -31.24419 -28.48507 -28.09219 -27.52055 -27.04305 -24.73090 -23.59659 -22.24908 -21.09316 -20.88291 -20.27076 -20.08414 -19.16103 -18.11499 -17.83140 -16.94197 -16.59919 -16.49548 -15.85434 -15.26305 -15.04724 -14.94133 -14.60506 -14.52538 -14.27277 -13.84031 -13.81089 -13.67472 -13.50063 -13.42132 -13.22325 -12.95182 -12.89473 -12.86132 -12.39338 -12.07421 -11.86393 -11.54910 -11.34106 -11.20458 -10.99710 -10.88319 -10.78493 -10.44451 -10.23577 -10.23066 -10.13716 -10.07350 -9.49724 -9.10380 -8.80169 -8.42063 -8.04896 -7.93922 -6.42900 -3.83849 0.87663 1.97996 2.35672 2.80555 2.91207 3.19508 3.25518 3.29777 3.63092 3.87457 3.87718 4.03957 4.16940 4.25250 4.33876 4.48685 4.56235 4.66378 4.74531 4.79463 4.85614 4.94988 4.97439 5.01331 5.12183 5.17674 5.24207 5.25084 5.32287 5.50163 5.65399 5.72196 5.74163 5.76526 5.91364 6.02739 6.04599 6.10757 6.24256 6.28434 6.58054 6.61387 7.06427 7.11820 7.23134 7.47612 7.54070 7.79189 8.04187 8.59774 9.16312 9.51972 10.03417 10.74595 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.001712 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.626846 B =16348.077753 C =16832.412234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.228 3.772 3 N -0.494 5.494 4 C 0.042 3.958 5 C -0.089 4.089 6 C 0.601 3.399 7 O -0.541 6.541 8 N -0.685 5.685 9 C 0.101 3.899 10 H 0.135 0.865 11 C -0.168 4.168 12 H 0.118 0.882 13 C 0.060 3.940 14 N -0.487 5.487 15 C 0.034 3.966 16 C 0.441 3.559 17 O -0.581 6.581 18 N -0.560 5.560 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.067 3.933 28 C -0.160 4.160 29 H 0.123 0.877 30 N -0.423 5.423 31 C 0.064 3.936 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.180 0.820 36 H 0.405 0.595 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.393 0.607 42 H 0.272 0.728 43 H 0.122 0.878 44 H 0.042 0.958 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.847 10.763 10.217 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.034 4.034 3 N -0.213 5.213 4 C -0.113 4.113 5 C -0.206 4.206 6 C 0.388 3.612 7 O -0.419 6.419 8 N -0.334 5.334 9 C -0.005 4.005 10 H 0.153 0.847 11 C -0.188 4.188 12 H 0.136 0.864 13 C -0.068 4.068 14 N -0.211 5.211 15 C -0.098 4.098 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.197 5.197 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.061 4.061 28 C -0.181 4.181 29 H 0.141 0.859 30 N -0.104 5.104 31 C -0.078 4.078 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.197 0.803 36 H 0.240 0.760 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.125 0.875 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.869 11.287 9.525 28.924 hybrid contribution 0.432 -1.608 -0.184 1.675 sum -24.437 9.679 9.340 27.895 Atomic orbital electron populations 1.20295 0.84220 1.04566 1.03979 1.23485 0.96007 0.81077 1.02790 1.70120 1.02097 1.28094 1.20943 1.22649 0.95307 0.91130 1.02170 1.20630 0.85282 0.94839 1.19807 1.16685 0.81868 0.86561 0.76091 1.90805 1.86583 1.14079 1.50420 1.44860 1.04018 1.11640 1.72868 1.21887 0.79316 0.96042 1.03259 0.84721 1.23784 0.96103 1.01963 0.96976 0.86414 1.22696 0.92504 0.96828 0.94768 1.65384 1.20556 1.33944 1.01195 1.22102 0.98253 0.90872 0.98554 1.19683 0.84506 0.84229 0.88909 1.90449 1.64702 1.42351 1.49094 1.41838 1.43063 1.20044 1.14706 1.19656 1.25841 1.06860 0.90642 0.87902 1.25267 0.97617 0.95446 0.99534 1.69604 1.39425 1.10988 1.34167 0.85912 0.79106 0.77523 0.81640 1.19861 1.20974 1.19914 1.23444 0.89637 0.95724 0.97258 1.24831 0.97694 1.02165 0.93362 0.85924 1.45093 1.05056 1.08471 1.51741 1.22326 1.02441 0.78714 1.04332 0.89631 0.88610 0.90418 0.80331 0.76027 0.89429 0.93607 0.88917 0.93175 0.77423 0.91790 0.86060 0.94015 0.89898 0.87465 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.01 36.01 0.36 0.05 16 2 C 0.23 1.98 7.88 -155.61 -1.23 0.76 16 3 N -0.49 -5.22 11.20 -10.58 -0.12 -5.33 16 4 C 0.04 0.40 11.36 -17.48 -0.20 0.20 16 5 C -0.09 -0.92 6.91 -82.14 -0.57 -1.49 16 6 C 0.60 6.96 7.78 -12.81 -0.10 6.86 16 7 O -0.54 -7.87 14.41 5.21 0.08 -7.79 16 8 N -0.69 -6.59 5.54 -55.09 -0.31 -6.90 16 9 C 0.10 1.16 5.94 -67.93 -0.40 0.75 16 10 H 0.14 1.81 7.38 -51.93 -0.38 1.43 16 11 C -0.17 -1.85 6.97 -89.31 -0.62 -2.47 16 12 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 13 C 0.06 0.76 6.30 -2.18 -0.01 0.75 16 14 N -0.49 -8.07 5.34 -229.20 -1.22 -9.29 16 15 C 0.03 0.60 5.55 -4.98 -0.03 0.58 16 16 C 0.44 10.31 7.50 -10.98 -0.08 10.22 16 17 O -0.58 -15.27 13.24 5.54 0.07 -15.19 16 18 N -0.56 -14.13 5.29 -10.97 -0.06 -14.19 16 19 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 27 C 0.07 1.12 5.18 -0.37 0.00 1.12 16 28 C -0.16 -2.02 7.32 -87.49 -0.64 -2.66 16 29 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 30 N -0.42 -3.89 3.17 -117.27 -0.37 -4.26 16 31 C 0.06 0.42 10.27 59.84 0.61 1.04 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.20 7.77 -51.93 -0.40 -0.20 16 35 H 0.18 1.12 7.51 -52.48 -0.39 0.73 16 36 H 0.40 2.73 7.82 -40.82 -0.32 2.41 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.56 7.82 -51.93 -0.41 0.16 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 41 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.12 2.43 6.05 -51.93 -0.31 2.11 16 44 H 0.04 0.72 7.99 -51.93 -0.42 0.31 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.11 0.91 6.36 -51.93 -0.33 0.58 16 47 H 0.09 0.31 7.85 -51.93 -0.41 -0.10 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -34.92 391.02 -10.06 -44.98 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.57 Total: 12.05 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -3.15 Total: 7.75 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -1.35 Total: -63.68 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.15 Total: -22.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.92 -10.06 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114730769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.884 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds