Wall clock time and date at job start Wed Apr 1 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30854 * 125.41746 * 2 1 4 4 C 1.33318 * 109.68590 * 180.02562 * 3 2 1 5 5 C 1.36661 * 107.78510 * 359.72985 * 4 3 2 6 6 C 1.46768 * 126.84962 * 180.30128 * 5 4 3 7 7 O 1.21681 * 120.00279 * 185.50441 * 6 5 4 8 8 N 1.34781 * 119.99612 * 5.50724 * 6 5 4 9 9 C 1.46494 * 119.99934 * 185.13870 * 8 6 5 10 10 H 1.09002 * 115.51923 * 350.58708 * 9 8 6 11 11 C 1.52998 * 117.44571 * 205.16257 * 9 8 6 12 12 H 1.08997 * 119.52414 * 4.08877 * 11 9 8 13 13 C 1.54375 * 118.12916 * 159.13405 * 11 9 8 14 14 N 1.48563 * 104.59582 * 87.23171 * 13 11 9 15 15 C 1.46904 * 111.00002 * 200.96243 * 14 13 11 16 16 C 1.50695 * 109.47122 * 169.99832 * 15 14 13 17 17 O 1.21296 * 120.00324 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99868 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99994 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99998 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99910 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00098 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46693 * 60.00101 * 23 21 19 25 25 H 1.48502 * 109.47331 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47199 * 300.00373 * 23 21 19 27 27 C 1.48557 * 104.22037 * 320.51404 * 14 13 11 28 28 C 1.53001 * 117.44451 * 135.99937 * 9 8 6 29 29 H 1.09000 * 119.52513 * 355.91819 * 28 9 8 30 30 N 1.34497 * 125.41569 * 180.02562 * 2 1 3 31 31 C 1.46494 * 126.47354 * 359.97438 * 30 2 1 32 32 H 1.08998 * 109.46704 * 269.97471 * 1 2 3 33 33 H 1.08997 * 109.47275 * 29.97407 * 1 2 3 34 34 H 1.08997 * 109.46972 * 149.97491 * 1 2 3 35 35 H 1.08004 * 126.10834 * 180.02562 * 4 3 2 36 36 H 0.97001 * 119.99683 * 5.14180 * 8 6 5 37 37 H 1.09000 * 110.41367 * 206.00359 * 13 11 9 38 38 H 1.08997 * 110.41311 * 328.44873 * 13 11 9 39 39 H 1.09000 * 109.46730 * 289.99818 * 15 14 13 40 40 H 1.09002 * 109.47366 * 49.99084 * 15 14 13 41 41 H 0.97001 * 119.99772 * 0.02562 * 18 16 15 42 42 H 0.97000 * 119.99700 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.41468 * 158.26765 * 27 14 13 44 44 H 1.09001 * 110.41513 * 280.58873 * 27 14 13 45 45 H 1.08997 * 109.47364 * 85.65359 * 31 30 2 46 46 H 1.09004 * 109.46726 * 205.65000 * 31 30 2 47 47 H 1.08998 * 109.47114 * 325.64999 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5976 -0.6608 0.0052 6 6 4.8028 -1.4983 0.0130 7 8 4.7043 -2.7073 -0.0835 8 7 6.0188 -0.9282 0.1271 9 6 7.2263 -1.7510 0.0219 10 1 7.0610 -2.8284 0.0121 11 6 8.4915 -1.2380 0.7126 12 1 8.4458 -0.3273 1.3097 13 6 9.6032 -2.2563 1.0448 14 7 10.4367 -2.3147 -0.1836 15 6 11.2172 -3.5583 -0.2317 16 6 11.8549 -3.6990 -1.5897 17 8 11.6765 -2.8473 -2.4348 18 7 12.6236 -4.7712 -1.8655 19 6 13.2034 -4.8995 -3.1011 20 1 13.0438 -4.1416 -3.8537 21 6 13.9954 -6.0051 -3.3855 22 7 14.1883 -6.9281 -2.4703 23 14 14.7848 -6.1802 -5.0695 24 1 15.6815 -5.0229 -5.3185 25 1 15.5745 -7.4370 -5.1178 26 1 13.7267 -6.2195 -6.1106 27 6 9.4527 -2.2604 -1.2952 28 6 8.3789 -1.2068 -0.8243 29 1 8.2495 -0.2728 -1.3712 30 7 2.2865 -1.0961 -0.0005 31 6 1.8311 -2.4885 -0.0006 32 1 -0.3633 -0.0005 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8897 -0.5142 35 1 4.3978 1.3722 -0.0003 36 1 6.0943 0.0269 0.2788 37 1 10.1966 -1.9090 1.8905 38 1 9.1716 -3.2342 1.2581 39 1 11.9933 -3.5299 0.5331 40 1 10.5588 -4.4078 -0.0496 41 1 12.7660 -5.4525 -1.1898 42 1 14.7409 -7.7001 -2.6690 43 1 9.9327 -1.9163 -2.2114 44 1 8.9990 -3.2395 -1.4495 45 1 1.6437 -2.8094 -1.0252 46 1 2.5989 -3.1218 0.4439 47 1 0.9120 -2.5702 0.5796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114730769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:14 Heat of formation + Delta-G solvation = 14.123653 kcal Electronic energy + Delta-G solvation = -29277.397946 eV Core-core repulsion = 25075.623270 eV Total energy + Delta-G solvation = -4201.774676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.35210 -41.42082 -40.34758 -39.48979 -36.50863 -35.84317 -35.12666 -33.93656 -33.28326 -32.64043 -29.46479 -29.19453 -28.57576 -27.75565 -26.50807 -24.53429 -23.34354 -22.13377 -21.69223 -21.31868 -20.95644 -20.78414 -19.85099 -18.86545 -17.91086 -17.62326 -17.25198 -17.18157 -16.62184 -16.39703 -16.29860 -15.87643 -15.68697 -15.43610 -15.03565 -14.93324 -14.83468 -14.25716 -14.23205 -14.15199 -13.83440 -13.72733 -13.52816 -13.34949 -13.26384 -13.17768 -13.17006 -12.93837 -12.53849 -12.44629 -12.35996 -12.12191 -11.98571 -11.59247 -11.48490 -11.11904 -11.03539 -10.81068 -10.23127 -10.03455 -9.95118 -9.51208 -9.40403 -8.47622 -5.96400 0.15042 1.29658 1.38705 1.40756 1.51693 1.64796 2.02331 2.04655 2.12218 2.27865 2.65924 2.86522 3.19136 3.29336 3.34869 3.51172 3.63233 3.67570 3.77610 3.83084 3.89030 4.06422 4.23227 4.26516 4.27355 4.32747 4.42296 4.50381 4.52131 4.56095 4.60729 4.67470 4.70944 4.77517 4.96928 5.03141 5.10306 5.11514 5.22357 5.33691 5.40003 5.42793 5.79658 5.86760 6.00212 6.06531 6.29527 6.58953 6.81044 6.98632 7.11320 7.53724 8.09443 8.69493 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.001712 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.626846 B =16348.077753 C =16832.412234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.232 3.768 3 N -0.526 5.526 4 C 0.048 3.952 5 C -0.116 4.116 6 C 0.600 3.400 7 O -0.578 6.578 8 N -0.670 5.670 9 C 0.108 3.892 10 H 0.113 0.887 11 C -0.143 4.143 12 H 0.151 0.849 13 C 0.057 3.943 14 N -0.501 5.501 15 C 0.045 3.955 16 C 0.438 3.562 17 O -0.614 6.614 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.080 0.920 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.066 3.934 28 C -0.167 4.167 29 H 0.137 0.863 30 N -0.431 5.431 31 C 0.062 3.938 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.205 0.795 36 H 0.421 0.579 37 H 0.111 0.889 38 H 0.051 0.949 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.081 0.919 44 H 0.024 0.976 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.227 11.766 11.602 30.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.030 4.030 3 N -0.246 5.246 4 C -0.107 4.107 5 C -0.232 4.232 6 C 0.389 3.611 7 O -0.459 6.459 8 N -0.320 5.320 9 C 0.002 3.998 10 H 0.131 0.869 11 C -0.163 4.163 12 H 0.168 0.832 13 C -0.070 4.070 14 N -0.225 5.225 15 C -0.086 4.086 16 C 0.225 3.775 17 O -0.500 6.500 18 N -0.209 5.209 19 C -0.464 4.464 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.062 4.062 28 C -0.187 4.187 29 H 0.155 0.845 30 N -0.111 5.111 31 C -0.079 4.079 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.221 0.779 36 H 0.259 0.741 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.042 0.958 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -26.252 12.309 10.942 30.990 hybrid contribution 0.771 -1.877 -0.599 2.116 sum -25.481 10.431 10.344 29.412 Atomic orbital electron populations 1.20517 0.81319 1.05810 1.05421 1.24300 0.97563 0.80507 1.00649 1.70167 1.02719 1.29165 1.22540 1.23121 0.95920 0.91101 1.00544 1.20577 0.85482 0.95105 1.22045 1.16916 0.82624 0.86214 0.75386 1.90787 1.87128 1.15691 1.52332 1.44671 1.02900 1.12276 1.72114 1.21589 0.79965 0.95322 1.02961 0.86896 1.23883 0.94570 1.02306 0.95524 0.83153 1.22839 0.92849 0.97870 0.93478 1.65379 1.21381 1.33039 1.02738 1.21996 0.99073 0.92428 0.95149 1.20704 0.83211 0.82873 0.90681 1.90445 1.65408 1.43290 1.50904 1.41909 1.43830 1.20903 1.14223 1.19634 1.27813 1.07349 0.91596 0.90217 1.26040 0.97478 0.94663 1.03044 1.69667 1.39583 1.11209 1.35574 0.84989 0.78179 0.77906 0.77254 1.19644 1.19456 1.19813 1.23201 0.90659 0.96006 0.96367 1.24636 0.97665 1.01553 0.94837 0.84541 1.45326 1.04802 1.09403 1.51597 1.22443 1.03045 0.77338 1.05095 0.87935 0.88192 0.88349 0.77860 0.74080 0.87090 0.93080 0.86619 0.91528 0.77016 0.91287 0.90069 0.95756 0.89408 0.89640 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.01 71.24 0.71 0.27 16 2 C 0.23 3.64 7.88 138.20 1.09 4.73 16 3 N -0.53 -10.36 11.20 -187.39 -2.10 -12.46 16 4 C 0.05 0.84 11.36 84.10 0.96 1.80 16 5 C -0.12 -2.32 6.91 40.01 0.28 -2.04 16 6 C 0.60 13.71 7.78 86.47 0.67 14.38 16 7 O -0.58 -17.23 14.41 -4.29 -0.06 -17.29 16 8 N -0.67 -11.97 5.54 -446.42 -2.47 -14.45 16 9 C 0.11 2.37 5.94 44.99 0.27 2.64 16 10 H 0.11 3.07 7.38 -2.39 -0.02 3.05 16 11 C -0.14 -2.77 6.97 -9.94 -0.07 -2.84 16 12 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 13 C 0.06 1.30 6.30 86.45 0.54 1.85 16 14 N -0.50 -16.30 5.34 -879.06 -4.69 -20.99 16 15 C 0.04 1.58 5.55 85.55 0.47 2.06 16 16 C 0.44 21.07 7.50 87.65 0.66 21.72 16 17 O -0.61 -33.75 13.24 -3.08 -0.04 -33.79 16 18 N -0.57 -29.68 5.29 -306.99 -1.62 -31.30 16 19 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.99 13.05 21.66 0.28 -49.70 16 23 Si 0.99 43.32 29.55 68.60 2.03 45.34 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 C 0.07 2.26 5.18 87.62 0.45 2.72 16 28 C -0.17 -4.08 7.32 -8.77 -0.06 -4.14 16 29 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 30 N -0.43 -7.47 3.17 -524.95 -1.67 -9.13 16 31 C 0.06 0.76 10.27 127.77 1.31 2.08 16 32 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.10 0.20 7.77 -2.39 -0.02 0.18 16 35 H 0.20 2.11 7.51 -2.91 -0.02 2.09 16 36 H 0.42 4.67 7.82 -92.71 -0.73 3.95 16 37 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.15 7.82 -2.39 -0.02 1.13 16 39 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.07 2.14 7.88 -2.39 -0.02 2.12 16 41 H 0.40 19.56 7.90 -92.71 -0.73 18.82 16 42 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.08 3.46 6.05 -2.39 -0.01 3.44 16 44 H 0.02 0.89 7.99 -2.39 -0.02 0.87 16 45 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 1.48 6.36 -2.38 -0.02 1.46 16 47 H 0.12 0.59 7.85 -2.39 -0.02 0.57 16 Total: -1.00 -79.06 391.02 -2.21 -81.27 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: -0.43 Total: 35.83 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 8.56 Total: 26.68 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -12.27 Total: -138.04 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.10 Total: -51.08 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -79.06 -2.21 -81.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114730769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.394 kcal (2) G-P(sol) polarization free energy of solvation -79.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds