Wall clock time and date at job start Wed Apr 1 2020 04:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30864 * 125.41791 * 2 1 4 4 C 1.33326 * 109.68221 * 179.74089 * 3 2 1 5 5 C 1.36663 * 107.78594 * 0.37528 * 4 3 2 6 6 C 1.46768 * 126.84470 * 179.89423 * 5 4 3 7 7 O 1.21679 * 119.99489 * 6.90191 * 6 5 4 8 8 N 1.34777 * 120.00032 * 186.90165 * 6 5 4 9 9 C 1.46718 * 125.24187 * 356.91844 * 8 6 5 10 10 C 1.54042 * 106.53400 * 160.85726 * 9 8 6 11 11 C 1.53892 * 103.85890 * 28.03627 * 10 9 8 12 12 H 1.08998 * 111.30710 * 95.07040 * 11 10 9 13 13 C 1.53561 * 110.48074 * 220.71467 * 11 10 9 14 14 N 1.47904 * 106.90277 * 118.55137 * 13 11 10 15 15 C 1.46897 * 111.00005 * 211.75571 * 14 13 11 16 16 C 1.50705 * 109.47471 * 190.00227 * 15 14 13 17 17 O 1.21302 * 119.99516 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00155 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99805 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00106 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00272 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99632 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47048 * 90.00537 * 23 21 19 25 25 H 1.48501 * 109.46801 * 210.00250 * 23 21 19 26 26 H 1.48501 * 109.47285 * 330.00066 * 23 21 19 27 27 C 1.49839 * 105.84905 * 332.14231 * 14 13 11 28 28 C 1.46777 * 125.23819 * 176.96099 * 8 6 5 29 29 H 1.08999 * 112.20419 * 58.39329 * 28 8 6 30 30 N 1.34498 * 125.42069 * 179.97438 * 2 1 3 31 31 H 0.97001 * 126.46887 * 359.97438 * 30 2 1 32 32 H 1.08998 * 109.47627 * 270.03237 * 1 2 3 33 33 H 1.09004 * 109.47192 * 30.02977 * 1 2 3 34 34 H 1.08997 * 109.47419 * 150.02444 * 1 2 3 35 35 H 1.07999 * 126.10306 * 180.27265 * 4 3 2 36 36 H 1.09005 * 110.04888 * 280.12745 * 9 8 6 37 37 H 1.08999 * 110.04724 * 41.58732 * 9 8 6 38 38 H 1.09003 * 110.54902 * 146.62705 * 10 9 8 39 39 H 1.08995 * 110.54949 * 269.44205 * 10 9 8 40 40 H 1.09000 * 109.96931 * 237.91194 * 13 11 10 41 41 H 1.08999 * 109.97926 * 359.15047 * 13 11 10 42 42 H 1.09007 * 109.47295 * 309.99954 * 15 14 13 43 43 H 1.08994 * 109.47404 * 70.00183 * 15 14 13 44 44 H 0.96991 * 120.00248 * 0.02562 * 18 16 15 45 45 H 0.96991 * 119.99965 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.63968 * 280.32603 * 27 14 13 47 47 H 1.09000 * 111.10653 * 157.08987 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5486 0.7049 0.0057 5 6 3.5975 -0.6608 0.0009 6 6 4.8028 -1.4983 0.0022 7 8 5.8989 -0.9868 0.1347 8 7 4.6955 -2.8339 -0.1432 9 6 3.4339 -3.5757 -0.2465 10 6 3.7775 -4.9400 -0.8738 11 6 5.2352 -5.1857 -0.4459 12 1 5.2857 -5.7938 0.4573 13 6 6.0407 -5.7905 -1.6049 14 7 7.1229 -4.8335 -1.9220 15 6 7.4561 -4.8704 -3.3522 16 6 8.7128 -4.0752 -3.5960 17 8 9.2753 -3.5308 -2.6694 18 7 9.2110 -3.9680 -4.8437 19 6 10.3540 -3.2441 -5.0655 20 1 10.8553 -2.7601 -4.2403 21 6 10.8674 -3.1331 -6.3519 22 7 11.9633 -2.4397 -6.5644 23 14 10.0007 -3.9709 -7.7789 24 1 9.0013 -3.0420 -8.3650 25 1 10.9981 -4.3426 -8.8144 26 1 9.3138 -5.1940 -7.2916 27 6 6.6038 -3.4839 -1.5291 28 6 5.8229 -3.7705 -0.2218 29 1 6.4612 -3.7218 0.6604 30 7 2.2864 -1.0960 0.0005 31 1 1.9849 -2.0180 0.0013 32 1 -0.3634 0.0006 1.0276 33 1 -0.3634 0.8897 -0.5143 34 1 -0.3634 -0.8902 -0.5134 35 1 4.3978 1.3722 0.0112 36 1 3.0019 -3.7181 0.7441 37 1 2.7346 -3.0363 -0.8854 38 1 3.1259 -5.7185 -0.4770 39 1 3.7006 -4.8920 -1.9599 40 1 6.4665 -6.7474 -1.3029 41 1 5.3974 -5.9272 -2.4741 42 1 7.6140 -5.9035 -3.6620 43 1 6.6364 -4.4399 -3.9274 44 1 8.7606 -4.4023 -5.5847 45 1 12.3218 -2.3626 -7.4623 46 1 5.9353 -3.0915 -2.2954 47 1 7.4216 -2.7882 -1.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187271893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:22 Heat of formation + Delta-G solvation = 26.111922 kcal Electronic energy + Delta-G solvation = -30788.627263 eV Core-core repulsion = 26587.372438 eV Total energy + Delta-G solvation = -4201.254826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.64065 -40.82641 -38.75946 -38.00959 -35.98575 -33.91176 -33.26551 -32.45115 -32.05517 -31.63646 -30.44253 -28.40588 -27.27676 -26.77429 -24.19431 -24.09313 -22.31734 -21.91017 -21.08951 -20.40329 -19.92940 -19.28960 -18.33768 -18.09207 -16.82653 -16.51641 -16.08461 -15.91676 -15.68498 -15.23317 -14.96195 -14.65769 -14.41585 -14.31510 -14.22085 -13.80907 -13.66656 -13.30995 -13.25803 -13.09284 -12.97065 -12.89976 -12.75229 -12.37732 -12.35666 -12.18326 -11.81320 -11.46996 -11.31840 -11.15917 -11.02614 -10.85516 -10.67618 -10.57471 -10.50613 -10.19329 -9.93416 -9.51629 -9.09799 -8.75649 -8.60080 -8.14887 -8.07671 -6.26436 -3.77617 0.99243 2.35111 2.48319 2.64827 3.03875 3.08271 3.09877 3.16445 3.77714 3.77978 3.86980 3.96076 4.10384 4.13573 4.20751 4.36755 4.56917 4.59333 4.70677 4.73898 4.87037 4.93047 4.98719 5.07860 5.13778 5.14905 5.23181 5.28393 5.35886 5.39502 5.43474 5.46764 5.56511 5.60914 5.67784 5.79229 5.87006 5.96710 6.06307 6.25960 6.41894 6.78221 6.91633 7.04037 7.11594 7.57716 7.62524 7.87159 8.19431 8.64976 9.00382 9.46985 9.88540 10.86922 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.002612 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.004361 B =10719.193327 C =11670.929633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.232 3.768 3 N -0.494 5.494 4 C 0.075 3.925 5 C -0.085 4.085 6 C 0.607 3.393 7 O -0.504 6.504 8 N -0.614 5.614 9 C 0.090 3.910 10 C -0.124 4.124 11 C -0.102 4.102 12 H 0.100 0.900 13 C 0.043 3.957 14 N -0.489 5.489 15 C 0.035 3.965 16 C 0.453 3.547 17 O -0.554 6.554 18 N -0.593 5.593 19 C -0.302 4.302 20 H 0.120 0.880 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.039 3.961 28 C 0.141 3.859 29 H 0.103 0.897 30 N -0.558 5.558 31 H 0.420 0.580 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.187 0.813 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.042 0.958 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.782 -6.469 11.990 31.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.032 4.032 3 N -0.214 5.214 4 C -0.079 4.079 5 C -0.200 4.200 6 C 0.395 3.605 7 O -0.377 6.377 8 N -0.349 5.349 9 C -0.034 4.034 10 C -0.162 4.162 11 C -0.122 4.122 12 H 0.118 0.882 13 C -0.086 4.086 14 N -0.213 5.213 15 C -0.097 4.097 16 C 0.238 3.762 17 O -0.434 6.434 18 N -0.234 5.234 19 C -0.431 4.431 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.089 4.089 28 C 0.037 3.963 29 H 0.121 0.879 30 N -0.169 5.169 31 H 0.265 0.735 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.204 0.796 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.201 0.799 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -27.378 -4.977 12.826 30.640 hybrid contribution -1.193 -1.785 -1.911 2.874 sum -28.571 -6.761 10.914 31.323 Atomic orbital electron populations 1.20305 0.84232 1.04596 1.04064 1.23519 0.95951 0.81805 1.01912 1.70224 1.02113 1.28248 1.20833 1.22731 0.94816 0.91168 0.99162 1.21111 0.83488 0.95914 1.19502 1.16510 0.87167 0.79791 0.77044 1.90947 1.26110 1.71921 1.48769 1.48219 1.07633 1.05550 1.73539 1.22233 0.87313 0.93467 1.00388 1.22550 0.96628 0.95451 1.01608 1.22579 0.93981 0.95812 0.99798 0.88179 1.22890 0.92295 0.97448 0.95918 1.64850 1.35274 1.04317 1.16873 1.22089 0.97379 1.01333 0.88883 1.19584 0.87195 0.85842 0.83550 1.90579 1.61421 1.49339 1.42079 1.42194 1.25829 1.48296 1.07033 1.19434 1.00425 1.26918 0.96304 0.86245 1.25030 0.96303 0.97460 0.97441 1.69620 1.20371 1.39984 1.22276 0.86681 0.79959 0.79729 0.83051 1.19743 1.20189 1.19561 1.23836 0.98910 0.92071 0.94058 1.22479 0.87345 0.86655 0.99796 0.87888 1.43931 1.06155 1.10464 1.56334 0.73536 0.89553 0.88530 0.90512 0.79635 0.91100 0.91385 0.89199 0.90206 0.89682 0.93454 0.89077 0.93269 0.79861 0.91669 0.94002 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.51 36.00 0.38 0.09 16 2 C 0.23 1.98 8.12 -155.61 -1.26 0.72 16 3 N -0.49 -5.89 11.20 -10.58 -0.12 -6.01 16 4 C 0.07 0.95 11.67 -17.47 -0.20 0.74 16 5 C -0.08 -1.00 6.84 -82.14 -0.56 -1.56 16 6 C 0.61 8.44 7.57 -12.81 -0.10 8.34 16 7 O -0.50 -9.16 16.93 5.21 0.09 -9.08 16 8 N -0.61 -6.84 2.93 -164.30 -0.48 -7.32 16 9 C 0.09 0.57 5.38 -3.38 -0.02 0.55 16 10 C -0.12 -0.71 6.50 -25.72 -0.17 -0.88 16 11 C -0.10 -0.87 3.83 -88.88 -0.34 -1.21 16 12 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 13 C 0.04 0.45 6.25 -2.98 -0.02 0.43 16 14 N -0.49 -7.75 4.94 -231.00 -1.14 -8.89 16 15 C 0.04 0.59 5.21 -4.98 -0.03 0.57 16 16 C 0.45 10.61 7.61 -10.99 -0.08 10.53 16 17 O -0.55 -15.39 14.68 5.54 0.08 -15.31 16 18 N -0.59 -14.51 5.09 -10.96 -0.06 -14.57 16 19 C -0.30 -8.76 10.16 -14.93 -0.15 -8.92 16 20 H 0.12 3.97 7.39 -52.49 -0.39 3.58 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -26.34 13.96 55.50 0.77 -25.57 16 23 Si 0.88 19.71 27.74 -169.99 -4.71 15.00 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 27 C 0.04 0.65 5.08 -1.15 -0.01 0.64 16 28 C 0.14 1.75 3.86 -65.77 -0.25 1.50 16 29 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 30 N -0.56 -4.46 5.46 -7.02 -0.04 -4.50 16 31 H 0.42 2.02 5.33 -40.82 -0.22 1.80 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.19 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.07 0.31 8.03 -51.93 -0.42 -0.11 16 37 H 0.07 0.35 5.74 -51.93 -0.30 0.05 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.50 7.37 -51.93 -0.38 0.11 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.43 6.92 -51.93 -0.36 0.07 16 42 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 43 H 0.05 0.74 7.83 -51.93 -0.41 0.34 16 44 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.04 0.69 7.73 -51.93 -0.40 0.29 16 47 H 0.11 2.31 7.18 -51.93 -0.37 1.94 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -38.62 378.46 -9.26 -47.88 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.45 Total: 10.10 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: -2.91 Total: 12.56 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -1.06 Total: -66.85 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.17 Total: -24.38 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.62 -9.26 -47.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187271893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.989 kcal (2) G-P(sol) polarization free energy of solvation -38.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds