Wall clock time and date at job start Wed Apr 1 2020 04:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30864 * 125.41791 * 2 1 4 4 C 1.33326 * 109.68221 * 179.74089 * 3 2 1 5 5 C 1.36663 * 107.78594 * 0.37528 * 4 3 2 6 6 C 1.46768 * 126.84470 * 179.89423 * 5 4 3 7 7 O 1.21679 * 119.99489 * 6.90191 * 6 5 4 8 8 N 1.34777 * 120.00032 * 186.90165 * 6 5 4 9 9 C 1.46718 * 125.24187 * 356.91844 * 8 6 5 10 10 C 1.54042 * 106.53400 * 160.85726 * 9 8 6 11 11 C 1.53892 * 103.85890 * 28.03627 * 10 9 8 12 12 H 1.08998 * 111.30710 * 95.07040 * 11 10 9 13 13 C 1.53561 * 110.48074 * 220.71467 * 11 10 9 14 14 N 1.47904 * 106.90277 * 118.55137 * 13 11 10 15 15 C 1.46897 * 111.00005 * 211.75571 * 14 13 11 16 16 C 1.50705 * 109.47471 * 190.00227 * 15 14 13 17 17 O 1.21302 * 119.99516 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00155 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99805 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00106 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00272 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99632 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47048 * 90.00537 * 23 21 19 25 25 H 1.48501 * 109.46801 * 210.00250 * 23 21 19 26 26 H 1.48501 * 109.47285 * 330.00066 * 23 21 19 27 27 C 1.49839 * 105.84905 * 332.14231 * 14 13 11 28 28 C 1.46777 * 125.23819 * 176.96099 * 8 6 5 29 29 H 1.08999 * 112.20419 * 58.39329 * 28 8 6 30 30 N 1.34498 * 125.42069 * 179.97438 * 2 1 3 31 31 H 0.97001 * 126.46887 * 359.97438 * 30 2 1 32 32 H 1.08998 * 109.47627 * 270.03237 * 1 2 3 33 33 H 1.09004 * 109.47192 * 30.02977 * 1 2 3 34 34 H 1.08997 * 109.47419 * 150.02444 * 1 2 3 35 35 H 1.07999 * 126.10306 * 180.27265 * 4 3 2 36 36 H 1.09005 * 110.04888 * 280.12745 * 9 8 6 37 37 H 1.08999 * 110.04724 * 41.58732 * 9 8 6 38 38 H 1.09003 * 110.54902 * 146.62705 * 10 9 8 39 39 H 1.08995 * 110.54949 * 269.44205 * 10 9 8 40 40 H 1.09000 * 109.96931 * 237.91194 * 13 11 10 41 41 H 1.08999 * 109.97926 * 359.15047 * 13 11 10 42 42 H 1.09007 * 109.47295 * 309.99954 * 15 14 13 43 43 H 1.08994 * 109.47404 * 70.00183 * 15 14 13 44 44 H 0.96991 * 120.00248 * 0.02562 * 18 16 15 45 45 H 0.96991 * 119.99965 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.63968 * 280.32603 * 27 14 13 47 47 H 1.09000 * 111.10653 * 157.08987 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5486 0.7049 0.0057 5 6 3.5975 -0.6608 0.0009 6 6 4.8028 -1.4983 0.0022 7 8 5.8989 -0.9868 0.1347 8 7 4.6955 -2.8339 -0.1432 9 6 3.4339 -3.5757 -0.2465 10 6 3.7775 -4.9400 -0.8738 11 6 5.2352 -5.1857 -0.4459 12 1 5.2857 -5.7938 0.4573 13 6 6.0407 -5.7905 -1.6049 14 7 7.1229 -4.8335 -1.9220 15 6 7.4561 -4.8704 -3.3522 16 6 8.7128 -4.0752 -3.5960 17 8 9.2753 -3.5308 -2.6694 18 7 9.2110 -3.9680 -4.8437 19 6 10.3540 -3.2441 -5.0655 20 1 10.8553 -2.7601 -4.2403 21 6 10.8674 -3.1331 -6.3519 22 7 11.9633 -2.4397 -6.5644 23 14 10.0007 -3.9709 -7.7789 24 1 9.0013 -3.0420 -8.3650 25 1 10.9981 -4.3426 -8.8144 26 1 9.3138 -5.1940 -7.2916 27 6 6.6038 -3.4839 -1.5291 28 6 5.8229 -3.7705 -0.2218 29 1 6.4612 -3.7218 0.6604 30 7 2.2864 -1.0960 0.0005 31 1 1.9849 -2.0180 0.0013 32 1 -0.3634 0.0006 1.0276 33 1 -0.3634 0.8897 -0.5143 34 1 -0.3634 -0.8902 -0.5134 35 1 4.3978 1.3722 0.0112 36 1 3.0019 -3.7181 0.7441 37 1 2.7346 -3.0363 -0.8854 38 1 3.1259 -5.7185 -0.4770 39 1 3.7006 -4.8920 -1.9599 40 1 6.4665 -6.7474 -1.3029 41 1 5.3974 -5.9272 -2.4741 42 1 7.6140 -5.9035 -3.6620 43 1 6.6364 -4.4399 -3.9274 44 1 8.7606 -4.4023 -5.5847 45 1 12.3218 -2.3626 -7.4623 46 1 5.9353 -3.0915 -2.2954 47 1 7.4216 -2.7882 -1.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187271893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:21 Heat of formation + Delta-G solvation = -6.842917 kcal Electronic energy + Delta-G solvation = -30790.056292 eV Core-core repulsion = 26587.372438 eV Total energy + Delta-G solvation = -4202.683855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.44030 -41.75253 -40.33448 -39.37963 -37.10920 -35.96525 -34.15000 -33.78170 -33.24332 -32.71846 -31.47015 -29.28650 -28.21525 -28.05077 -25.97006 -24.93735 -23.10894 -22.89101 -22.04192 -21.33783 -21.09308 -20.81285 -20.18756 -19.03156 -17.88927 -17.48110 -17.40730 -16.97784 -16.80618 -16.63168 -16.30620 -15.80863 -15.63901 -15.45367 -15.11455 -15.00248 -14.70902 -14.54723 -14.31572 -14.28538 -14.22934 -13.75363 -13.58840 -13.46415 -13.25050 -13.09501 -13.03811 -12.97371 -12.52273 -12.44262 -12.05135 -11.99706 -11.94800 -11.68044 -11.62151 -11.52359 -11.28894 -11.16591 -10.45314 -10.27580 -10.07150 -9.58853 -9.34793 -8.43565 -6.05180 0.10830 1.26383 1.33322 1.42401 1.49957 1.65351 1.90822 1.93458 2.12824 2.20976 2.61287 3.09057 3.13419 3.17861 3.33500 3.43443 3.54996 3.59033 3.96141 3.99771 4.01454 4.10333 4.16584 4.20928 4.27832 4.28709 4.38923 4.46633 4.51172 4.54438 4.64990 4.75602 4.79798 4.81914 4.94901 4.96235 5.06998 5.10322 5.11918 5.30399 5.37888 5.49800 5.71811 5.88762 6.01510 6.17946 6.23781 6.57304 6.77530 6.85961 6.86670 7.36621 7.95891 8.74694 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.002612 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.004361 B =10719.193327 C =11670.929633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.250 3.750 3 N -0.530 5.530 4 C 0.054 3.946 5 C -0.094 4.094 6 C 0.599 3.401 7 O -0.569 6.569 8 N -0.609 5.609 9 C 0.078 3.922 10 C -0.112 4.112 11 C -0.088 4.088 12 H 0.126 0.874 13 C 0.042 3.958 14 N -0.518 5.518 15 C 0.049 3.951 16 C 0.446 3.554 17 O -0.610 6.610 18 N -0.592 5.592 19 C -0.330 4.330 20 H 0.049 0.951 21 C -0.018 4.018 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.227 1.227 27 C 0.047 3.953 28 C 0.138 3.862 29 H 0.077 0.923 30 N -0.538 5.538 31 H 0.438 0.562 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.172 0.828 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.390 0.610 45 H 0.280 0.720 46 H 0.037 0.963 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.005 -11.027 10.668 38.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.015 4.015 3 N -0.250 5.250 4 C -0.100 4.100 5 C -0.211 4.211 6 C 0.389 3.611 7 O -0.448 6.448 8 N -0.342 5.342 9 C -0.044 4.044 10 C -0.150 4.150 11 C -0.108 4.108 12 H 0.144 0.856 13 C -0.085 4.085 14 N -0.243 5.243 15 C -0.083 4.083 16 C 0.234 3.766 17 O -0.494 6.494 18 N -0.235 5.235 19 C -0.459 4.459 20 H 0.067 0.933 21 C -0.217 4.217 22 N -0.577 5.577 23 Si 0.788 3.212 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.150 1.150 27 C -0.082 4.082 28 C 0.034 3.966 29 H 0.095 0.905 30 N -0.151 5.151 31 H 0.286 0.714 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.189 0.811 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.152 0.848 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.148 0.852 43 H 0.096 0.904 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.055 0.945 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -33.681 -9.624 11.517 36.874 hybrid contribution 0.783 -0.270 -1.365 1.596 sum -32.899 -9.894 10.152 35.823 Atomic orbital electron populations 1.20596 0.80389 1.06309 1.05813 1.24452 0.97644 0.80901 0.98491 1.70222 1.01838 1.30216 1.22768 1.22728 0.95360 0.91879 1.00073 1.20664 0.84357 0.95208 1.20824 1.16874 0.86962 0.80879 0.76374 1.90910 1.28547 1.73414 1.51917 1.48263 1.09425 1.04688 1.71819 1.22687 0.85207 0.93616 1.02850 1.22620 0.94736 0.95719 1.01914 1.22623 0.95440 0.92344 1.00369 0.85617 1.23081 0.91351 0.96375 0.97647 1.64703 1.38605 1.04736 1.16267 1.22014 0.93954 1.01956 0.90353 1.21046 0.88553 0.84730 0.82305 1.90568 1.63552 1.51373 1.43888 1.42006 1.24777 1.48317 1.08352 1.18976 1.02681 1.28951 0.95292 0.93294 1.26197 0.96879 0.97691 1.00897 1.69817 1.22582 1.41583 1.23725 0.85312 0.78840 0.79855 0.77144 1.18283 1.19733 1.15033 1.23501 0.96758 0.91677 0.96285 1.22371 0.87787 0.89883 0.96558 0.90469 1.43763 1.04295 1.11425 1.55602 0.71396 0.87599 0.88470 0.87131 0.81052 0.87935 0.89734 0.84832 0.89994 0.88086 0.90634 0.85196 0.90424 0.77441 0.91101 0.94482 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.51 71.23 0.75 0.47 16 2 C 0.25 3.70 8.12 138.19 1.12 4.83 16 3 N -0.53 -12.65 11.20 -187.39 -2.10 -14.75 16 4 C 0.05 1.46 11.67 84.10 0.98 2.44 16 5 C -0.09 -2.28 6.84 40.01 0.27 -2.00 16 6 C 0.60 17.82 7.57 86.47 0.65 18.48 16 7 O -0.57 -23.46 16.93 -4.28 -0.07 -23.54 16 8 N -0.61 -13.28 2.93 -791.96 -2.32 -15.60 16 9 C 0.08 0.65 5.38 86.69 0.47 1.12 16 10 C -0.11 -0.61 6.50 31.25 0.20 -0.40 16 11 C -0.09 -1.17 3.83 -9.67 -0.04 -1.20 16 12 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 13 C 0.04 0.71 6.25 86.30 0.54 1.25 16 14 N -0.52 -16.05 4.94 -884.76 -4.37 -20.42 16 15 C 0.05 1.56 5.21 85.56 0.45 2.00 16 16 C 0.45 21.64 7.61 87.66 0.67 22.31 16 17 O -0.61 -36.97 14.68 -3.10 -0.05 -37.01 16 18 N -0.59 -29.48 5.09 -306.97 -1.56 -31.05 16 19 C -0.33 -20.36 10.16 84.04 0.85 -19.51 16 20 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 21 C -0.02 -1.07 5.50 84.93 0.47 -0.60 16 22 N -0.94 -58.67 13.96 21.66 0.30 -58.37 16 23 Si 0.97 39.90 27.74 68.60 1.90 41.80 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 27 C 0.05 1.62 5.08 86.39 0.44 2.06 16 28 C 0.14 3.48 3.86 46.24 0.18 3.65 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 N -0.54 -7.33 5.46 -176.11 -0.96 -8.29 16 31 H 0.44 2.33 5.33 -92.71 -0.49 1.84 16 32 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.10 0.45 8.14 -2.39 -0.02 0.44 16 34 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 36 H 0.10 0.31 8.03 -2.38 -0.02 0.29 16 37 H 0.08 0.46 5.74 -2.39 -0.01 0.45 16 38 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.08 0.49 7.37 -2.39 -0.02 0.47 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 0.91 6.92 -2.39 -0.02 0.89 16 42 H 0.13 3.18 8.08 -2.38 -0.02 3.17 16 43 H 0.08 2.08 7.83 -2.39 -0.02 2.06 16 44 H 0.39 15.82 5.76 -92.71 -0.53 15.29 16 45 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 46 H 0.04 1.27 7.73 -2.39 -0.02 1.25 16 47 H 0.04 1.87 7.18 -2.39 -0.02 1.86 16 Total: -1.00 -101.98 378.46 -1.28 -103.26 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.06 Total: 29.07 kcal Atomic # 6 Polarization: 26.89 SS G_CDS: 8.00 Total: 34.89 kcal Atomic # 7 Polarization: -137.46 SS G_CDS: -11.01 Total: -148.47 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -0.12 Total: -60.55 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.90 Total: 41.80 kcal Total: -101.98 -1.28 -103.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187271893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.417 kcal (2) G-P(sol) polarization free energy of solvation -101.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds