Wall clock time and date at job start Wed Apr 1 2020 04:28:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50702 * 109.47311 * 2 1
4 4 N 1.32165 * 120.53645 * 276.12216 * 3 2 1
5 5 C 1.31854 * 120.96155 * 180.33241 * 4 3 2
6 6 N 1.31889 * 122.10050 * 359.64839 * 5 4 3
7 7 C 1.32132 * 120.96274 * 0.03056 * 6 5 4
8 8 C 1.39926 * 120.53881 * 95.82857 * 3 2 1
9 9 C 1.47841 * 120.93566 * 359.97438 * 8 3 2
10 10 O 1.21555 * 119.99944 * 315.10809 * 9 8 3
11 11 N 1.34775 * 120.00131 * 134.83741 * 9 8 3
12 12 C 1.47029 * 125.64318 * 355.06279 * 11 9 8
13 13 C 1.54329 * 107.26720 * 181.02475 * 12 11 9
14 14 C 1.55161 * 102.94194 * 22.19199 * 13 12 11
15 15 H 1.08998 * 111.00413 * 82.57238 * 14 13 12
16 16 N 1.46902 * 111.00156 * 206.38641 * 14 13 12
17 17 C 1.46900 * 110.99569 * 204.99887 * 16 14 13
18 18 C 1.50701 * 109.47081 * 179.97438 * 17 16 14
19 19 O 1.21300 * 119.99821 * 0.02562 * 18 17 16
20 20 N 1.34775 * 120.00406 * 180.02562 * 18 17 16
21 21 C 1.37099 * 120.00139 * 179.97438 * 20 18 17
22 22 H 1.07999 * 120.00375 * 0.02562 * 21 20 18
23 23 C 1.38948 * 119.99555 * 179.97438 * 21 20 18
24 24 N 1.31404 * 120.00465 * 0.02562 * 23 21 20
25 25 Si 1.86803 * 119.99490 * 180.02562 * 23 21 20
26 26 H 1.48493 * 109.47533 * 359.97438 * 25 23 21
27 27 H 1.48505 * 109.47235 * 120.00186 * 25 23 21
28 28 H 1.48498 * 109.47147 * 239.99648 * 25 23 21
29 29 C 1.47418 * 125.65156 * 174.75374 * 11 9 8
30 30 H 1.09001 * 109.46990 * 299.99874 * 1 2 3
31 31 H 1.09003 * 109.47194 * 60.00069 * 1 2 3
32 32 H 1.09001 * 109.46560 * 179.97438 * 1 2 3
33 33 H 1.09004 * 109.47436 * 240.00367 * 2 1 3
34 34 H 1.08994 * 109.47300 * 120.00550 * 2 1 3
35 35 H 1.08006 * 118.95125 * 179.68047 * 5 4 3
36 36 H 1.07993 * 120.53579 * 179.97438 * 7 6 5
37 37 H 1.08993 * 109.88217 * 300.44200 * 12 11 9
38 38 H 1.09001 * 109.87991 * 61.61308 * 12 11 9
39 39 H 1.08999 * 110.71839 * 140.55771 * 13 12 11
40 40 H 1.09007 * 110.71852 * 263.83190 * 13 12 11
41 41 H 1.00905 * 111.00058 * 81.04867 * 16 14 13
42 42 H 1.08996 * 109.47391 * 299.99898 * 17 16 14
43 43 H 1.09004 * 109.46835 * 60.00324 * 17 16 14
44 44 H 0.97003 * 119.99603 * 0.02562 * 20 18 17
45 45 H 0.97005 * 120.00035 * 180.02562 * 24 23 21
46 46 H 1.08994 * 110.36793 * 274.74786 * 29 11 9
47 47 H 1.09006 * 110.36341 * 37.07024 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.1418 2.0944 -1.1319
5 6 2.5865 3.3356 -1.1423
6 7 2.9347 3.9647 -0.0366
7 6 2.8513 3.3686 1.1397
8 6 2.3848 2.0503 1.1989
9 6 2.2733 1.3409 2.4912
10 8 1.2780 0.6903 2.7435
11 7 3.2775 1.4111 3.3874
12 6 4.5750 2.0678 3.1706
13 6 5.4077 1.8723 4.4551
14 6 4.7473 0.6313 5.1118
15 1 5.1290 -0.2915 4.6750
16 7 4.9407 0.6407 6.5680
17 6 4.8744 -0.7204 7.1166
18 6 5.0773 -0.6710 8.6091
19 8 5.2588 0.3936 9.1615
20 7 5.0571 -1.8095 9.3301
21 6 5.2423 -1.7645 10.6878
22 1 5.4039 -0.8167 11.1796
23 6 5.2209 -2.9382 11.4310
24 7 5.0237 -4.0914 10.8327
25 14 5.4725 -2.8768 13.2810
26 1 5.6735 -1.4685 13.7068
27 1 4.2764 -3.4345 13.9621
28 1 6.6681 -3.6788 13.6449
29 6 3.2545 0.8477 4.7495
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3632 -1.0277 -0.0005
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5139 0.8899
35 1 2.6678 3.8540 -2.0864
36 1 3.1386 3.8901 2.0406
37 1 5.0859 1.6089 2.3242
38 1 4.4256 3.1313 2.9840
39 1 6.4508 1.6705 4.2115
40 1 5.3238 2.7432 5.1054
41 1 4.2696 1.2450 7.0181
42 1 3.8988 -1.1538 6.8964
43 1 5.6545 -1.3328 6.6643
44 1 4.9123 -2.6608 8.8882
45 1 5.0085 -4.9108 11.3517
46 1 2.7914 1.5499 5.4426
47 1 2.7209 -0.1028 4.7579
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001187871838.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:28:33
Heat of formation + Delta-G solvation = -14.409164 kcal
Electronic energy + Delta-G solvation = -29651.843992 eV
Core-core repulsion = 25448.832040 eV
Total energy + Delta-G solvation = -4203.011952 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.84787 -40.14760 -38.52180 -37.79954 -35.57048 -34.86671 -33.87932 -33.38482
-31.72017 -31.26083 -30.73678 -28.87535 -26.60287 -25.62894 -25.47155 -24.08056
-23.26753 -22.38223 -21.08257 -20.22921 -19.35110 -18.49945 -18.01319 -17.75206
-17.36173 -16.50332 -16.30797 -15.82176 -15.48293 -15.36007 -14.85666 -14.54934
-14.48418 -14.31325 -14.14042 -13.91069 -13.74605 -13.68653 -13.31972 -13.07514
-12.93223 -12.75907 -12.38989 -12.13585 -11.96748 -11.94321 -11.77825 -11.52547
-11.45972 -11.32825 -11.09859 -11.08399 -10.98677 -10.36813 -10.35870 -10.25645
-10.04503 -9.79079 -9.55697 -9.06542 -8.55578 -8.19845 -8.00318 -6.45161
-3.86151 0.03211 0.49273 2.21006 2.45525 3.14191 3.20425 3.25240
3.32238 3.46801 3.56877 3.79925 3.83971 3.85674 4.00836 4.20271
4.30244 4.41781 4.47197 4.72195 4.76306 4.79100 4.89053 4.95581
5.02569 5.06921 5.11593 5.20254 5.22511 5.32187 5.46519 5.53645
5.59115 5.67395 5.69538 5.73509 5.78771 5.80972 5.90101 5.91406
5.98171 6.20967 6.36793 7.01709 7.04708 7.46921 7.49029 7.52331
7.65123 8.02376 8.56685 9.14199 9.49951 10.00694 10.72466
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.023170 B = 0.001819 C = 0.001725
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1208.151263 B =15391.599400 C =16231.630032
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.079 4.079
3 C 0.231 3.769
4 N -0.519 5.519
5 C 0.313 3.687
6 N -0.524 5.524
7 C 0.183 3.817
8 C -0.233 4.233
9 C 0.583 3.417
10 O -0.518 6.518
11 N -0.608 5.608
12 C 0.094 3.906
13 C -0.119 4.119
14 C 0.078 3.922
15 H 0.095 0.905
16 N -0.651 5.651
17 C 0.048 3.952
18 C 0.439 3.561
19 O -0.584 6.584
20 N -0.562 5.562
21 C -0.300 4.300
22 H 0.104 0.896
23 C 0.022 3.978
24 N -0.900 5.900
25 Si 0.930 3.070
26 H -0.268 1.268
27 H -0.282 1.282
28 H -0.281 1.281
29 C 0.076 3.924
30 H 0.067 0.933
31 H 0.055 0.945
32 H 0.067 0.933
33 H 0.088 0.912
34 H 0.089 0.911
35 H 0.202 0.798
36 H 0.175 0.825
37 H 0.070 0.930
38 H 0.071 0.929
39 H 0.089 0.911
40 H 0.087 0.913
41 H 0.354 0.646
42 H 0.047 0.953
43 H 0.088 0.912
44 H 0.392 0.608
45 H 0.271 0.729
46 H 0.075 0.925
47 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.086 10.366 -24.842 27.227
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.117 4.117
3 C 0.084 3.916
4 N -0.233 5.233
5 C 0.026 3.974
6 N -0.237 5.237
7 C 0.017 3.983
8 C -0.240 4.240
9 C 0.370 3.630
10 O -0.394 6.394
11 N -0.343 5.343
12 C -0.029 4.029
13 C -0.158 4.158
14 C -0.034 4.034
15 H 0.113 0.887
16 N -0.283 5.283
17 C -0.085 4.085
18 C 0.225 3.775
19 O -0.468 6.468
20 N -0.199 5.199
21 C -0.429 4.429
22 H 0.122 0.878
23 C -0.180 4.180
24 N -0.542 5.542
25 Si 0.757 3.243
26 H -0.192 1.192
27 H -0.208 1.208
28 H -0.207 1.207
29 C -0.048 4.048
30 H 0.086 0.914
31 H 0.074 0.926
32 H 0.086 0.914
33 H 0.106 0.894
34 H 0.108 0.892
35 H 0.219 0.781
36 H 0.192 0.808
37 H 0.088 0.912
38 H 0.089 0.911
39 H 0.108 0.892
40 H 0.106 0.894
41 H 0.174 0.826
42 H 0.065 0.935
43 H 0.106 0.894
44 H 0.226 0.774
45 H 0.081 0.919
46 H 0.094 0.906
47 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -3.800 11.019 -25.190 27.756
hybrid contribution -0.889 -1.056 1.305 1.900
sum -4.689 9.962 -23.885 26.301
Atomic orbital electron populations
1.21636 0.92616 1.02833 1.02564 1.20664 0.97997 0.88833 1.04214
1.21922 0.86426 0.96659 0.86546 1.68375 1.15845 1.09633 1.29442
1.25246 0.87521 0.87360 0.97225 1.68493 1.17910 1.38255 0.99067
1.23579 0.87911 0.90164 0.96695 1.21573 1.08082 0.98374 0.96015
1.17424 0.82473 0.80739 0.82385 1.90833 1.29963 1.40861 1.77716
1.48279 1.15154 1.56097 1.14730 1.22323 0.83418 0.97507 0.99671
1.22665 0.99450 0.99297 0.94387 1.22863 0.91702 0.99089 0.89796
0.88716 1.60150 1.57164 1.10179 1.00762 1.21767 1.00838 0.90379
0.95491 1.19754 0.84890 0.85156 0.87727 1.90532 1.54758 1.29531
1.72001 1.41869 1.62644 1.07395 1.07947 1.19755 1.45959 0.95150
0.82057 0.87813 1.25276 0.97277 0.94669 1.00744 1.69616 1.49698
0.98044 1.36814 0.85793 0.77819 0.78605 0.82089 1.19194 1.20752
1.20725 1.23276 0.99506 0.99782 0.82280 0.91395 0.92561 0.91442
0.89390 0.89215 0.78126 0.80836 0.91184 0.91116 0.89231 0.89428
0.82553 0.93516 0.89359 0.77432 0.91872 0.90638 0.89863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.20 9.77 37.16 0.36 -0.84 16
2 C -0.08 -0.70 5.57 -27.88 -0.16 -0.86 16
3 C 0.23 2.23 6.11 -81.82 -0.50 1.73 16
4 N -0.52 -4.78 10.36 -10.47 -0.11 -4.89 16
5 C 0.31 2.40 12.27 -92.02 -1.13 1.28 16
6 N -0.52 -4.44 10.42 -14.24 -0.15 -4.59 16
7 C 0.18 1.49 9.76 -16.78 -0.16 1.32 16
8 C -0.23 -2.21 5.40 -104.69 -0.57 -2.78 16
9 C 0.58 6.39 6.68 -12.33 -0.08 6.30 16
10 O -0.52 -7.16 14.62 5.32 0.08 -7.08 16
11 N -0.61 -5.77 3.32 -171.49 -0.57 -6.34 16
12 C 0.09 0.66 5.93 -3.06 -0.02 0.64 16
13 C -0.12 -0.96 6.65 -24.89 -0.17 -1.13 16
14 C 0.08 0.80 3.40 -65.44 -0.22 0.58 16
15 H 0.09 0.95 7.83 -51.93 -0.41 0.55 16
16 N -0.65 -9.21 6.04 -105.60 -0.64 -9.85 16
17 C 0.05 0.77 6.03 -4.98 -0.03 0.74 16
18 C 0.44 9.96 7.82 -10.99 -0.09 9.87 16
19 O -0.58 -15.32 15.78 5.54 0.09 -15.23 16
20 N -0.56 -13.90 5.29 -10.96 -0.06 -13.95 16
21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16
22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16
23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16
24 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16
25 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16
26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16
27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
29 C 0.08 0.79 6.53 -2.41 -0.02 0.77 16
30 H 0.07 0.71 7.23 -51.93 -0.38 0.34 16
31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
34 H 0.09 0.87 6.39 -51.93 -0.33 0.54 16
35 H 0.20 0.82 8.06 -52.48 -0.42 0.40 16
36 H 0.17 1.04 6.23 -52.49 -0.33 0.72 16
37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
38 H 0.07 0.39 5.80 -51.93 -0.30 0.09 16
39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16
40 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16
41 H 0.35 5.21 7.89 -39.29 -0.31 4.90 16
42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
43 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16
44 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16
45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16
46 H 0.08 0.80 7.76 -51.93 -0.40 0.39 16
47 H 0.08 0.96 7.99 -51.93 -0.41 0.54 16
LS Contribution 390.46 15.07 5.88 5.88
Total: -1.00 -33.22 390.46 -9.29 -42.51
By element:
Atomic # 1 Polarization: 18.00 SS G_CDS: -6.50 Total: 11.49 kcal
Atomic # 6 Polarization: 12.76 SS G_CDS: -3.01 Total: 9.75 kcal
Atomic # 7 Polarization: -62.31 SS G_CDS: -0.80 Total: -63.11 kcal
Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.32 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -33.22 -9.29 -42.51 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001187871838.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.102 kcal
(2) G-P(sol) polarization free energy of solvation -33.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.122 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds