Wall clock time and date at job start Wed Apr 1 2020 04:28:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50702 * 109.47311 * 2 1
4 4 N 1.32165 * 120.53645 * 276.12216 * 3 2 1
5 5 C 1.31854 * 120.96155 * 180.33241 * 4 3 2
6 6 N 1.31889 * 122.10050 * 359.64839 * 5 4 3
7 7 C 1.32132 * 120.96274 * 0.03056 * 6 5 4
8 8 C 1.39926 * 120.53881 * 95.82857 * 3 2 1
9 9 C 1.47841 * 120.93566 * 359.97438 * 8 3 2
10 10 O 1.21555 * 119.99944 * 315.10809 * 9 8 3
11 11 N 1.34775 * 120.00131 * 134.83741 * 9 8 3
12 12 C 1.47029 * 125.64318 * 355.06279 * 11 9 8
13 13 C 1.54329 * 107.26720 * 181.02475 * 12 11 9
14 14 C 1.55161 * 102.94194 * 22.19199 * 13 12 11
15 15 H 1.08998 * 111.00413 * 82.57238 * 14 13 12
16 16 N 1.46902 * 111.00156 * 206.38641 * 14 13 12
17 17 C 1.46900 * 110.99569 * 204.99887 * 16 14 13
18 18 C 1.50701 * 109.47081 * 179.97438 * 17 16 14
19 19 O 1.21300 * 119.99821 * 0.02562 * 18 17 16
20 20 N 1.34775 * 120.00406 * 180.02562 * 18 17 16
21 21 C 1.37099 * 120.00139 * 179.97438 * 20 18 17
22 22 H 1.07999 * 120.00375 * 0.02562 * 21 20 18
23 23 C 1.38948 * 119.99555 * 179.97438 * 21 20 18
24 24 N 1.31404 * 120.00465 * 0.02562 * 23 21 20
25 25 Si 1.86803 * 119.99490 * 180.02562 * 23 21 20
26 26 H 1.48493 * 109.47533 * 359.97438 * 25 23 21
27 27 H 1.48505 * 109.47235 * 120.00186 * 25 23 21
28 28 H 1.48498 * 109.47147 * 239.99648 * 25 23 21
29 29 C 1.47418 * 125.65156 * 174.75374 * 11 9 8
30 30 H 1.09001 * 109.46990 * 299.99874 * 1 2 3
31 31 H 1.09003 * 109.47194 * 60.00069 * 1 2 3
32 32 H 1.09001 * 109.46560 * 179.97438 * 1 2 3
33 33 H 1.09004 * 109.47436 * 240.00367 * 2 1 3
34 34 H 1.08994 * 109.47300 * 120.00550 * 2 1 3
35 35 H 1.08006 * 118.95125 * 179.68047 * 5 4 3
36 36 H 1.07993 * 120.53579 * 179.97438 * 7 6 5
37 37 H 1.08993 * 109.88217 * 300.44200 * 12 11 9
38 38 H 1.09001 * 109.87991 * 61.61308 * 12 11 9
39 39 H 1.08999 * 110.71839 * 140.55771 * 13 12 11
40 40 H 1.09007 * 110.71852 * 263.83190 * 13 12 11
41 41 H 1.00905 * 111.00058 * 81.04867 * 16 14 13
42 42 H 1.08996 * 109.47391 * 299.99898 * 17 16 14
43 43 H 1.09004 * 109.46835 * 60.00324 * 17 16 14
44 44 H 0.97003 * 119.99603 * 0.02562 * 20 18 17
45 45 H 0.97005 * 120.00035 * 180.02562 * 24 23 21
46 46 H 1.08994 * 110.36793 * 274.74786 * 29 11 9
47 47 H 1.09006 * 110.36341 * 37.07024 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.1418 2.0944 -1.1319
5 6 2.5865 3.3356 -1.1423
6 7 2.9347 3.9647 -0.0366
7 6 2.8513 3.3686 1.1397
8 6 2.3848 2.0503 1.1989
9 6 2.2733 1.3409 2.4912
10 8 1.2780 0.6903 2.7435
11 7 3.2775 1.4111 3.3874
12 6 4.5750 2.0678 3.1706
13 6 5.4077 1.8723 4.4551
14 6 4.7473 0.6313 5.1118
15 1 5.1290 -0.2915 4.6750
16 7 4.9407 0.6407 6.5680
17 6 4.8744 -0.7204 7.1166
18 6 5.0773 -0.6710 8.6091
19 8 5.2588 0.3936 9.1615
20 7 5.0571 -1.8095 9.3301
21 6 5.2423 -1.7645 10.6878
22 1 5.4039 -0.8167 11.1796
23 6 5.2209 -2.9382 11.4310
24 7 5.0237 -4.0914 10.8327
25 14 5.4725 -2.8768 13.2810
26 1 5.6735 -1.4685 13.7068
27 1 4.2764 -3.4345 13.9621
28 1 6.6681 -3.6788 13.6449
29 6 3.2545 0.8477 4.7495
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3632 -1.0277 -0.0005
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5139 0.8899
35 1 2.6678 3.8540 -2.0864
36 1 3.1386 3.8901 2.0406
37 1 5.0859 1.6089 2.3242
38 1 4.4256 3.1313 2.9840
39 1 6.4508 1.6705 4.2115
40 1 5.3238 2.7432 5.1054
41 1 4.2696 1.2450 7.0181
42 1 3.8988 -1.1538 6.8964
43 1 5.6545 -1.3328 6.6643
44 1 4.9123 -2.6608 8.8882
45 1 5.0085 -4.9108 11.3517
46 1 2.7914 1.5499 5.4426
47 1 2.7209 -0.1028 4.7579
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001187871838.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:28:32
Heat of formation + Delta-G solvation = -38.541265 kcal
Electronic energy + Delta-G solvation = -29652.890439 eV
Core-core repulsion = 25448.832040 eV
Total energy + Delta-G solvation = -4204.058398 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.51894 -40.94903 -40.12189 -38.87499 -36.37900 -36.07453 -35.57368 -34.10508
-33.27175 -32.46134 -31.52139 -29.80778 -27.92801 -26.58978 -26.22210 -25.51673
-24.09906 -23.04927 -21.93295 -21.10749 -20.96532 -19.92751 -19.17628 -18.60009
-17.98786 -17.74282 -17.31927 -16.85511 -16.78754 -16.34787 -16.15281 -15.85302
-15.53484 -15.44281 -15.03534 -14.92083 -14.77089 -14.52605 -14.24512 -14.17024
-13.99448 -13.61570 -13.51013 -13.49180 -13.21611 -12.91736 -12.84093 -12.62069
-12.58773 -12.42982 -12.37148 -12.11053 -12.03657 -11.77254 -11.68360 -11.51238
-11.16652 -10.75218 -10.44170 -10.34869 -10.01544 -9.84236 -9.38309 -8.46871
-5.95436 -0.61653 -0.15942 1.36755 1.41555 1.42439 1.56317 1.68215
2.05271 2.29077 2.56337 2.84116 2.86062 3.03370 3.17262 3.20047
3.21121 3.45329 3.61339 3.71484 3.75179 4.00567 4.09114 4.16597
4.23044 4.27085 4.27879 4.33297 4.42140 4.44991 4.55876 4.60543
4.67124 4.74648 4.75577 4.91555 4.99984 5.01166 5.14316 5.15944
5.20768 5.27327 5.41593 5.72566 5.87213 6.07511 6.25179 6.32200
6.59616 6.83656 6.87510 7.12714 7.56417 8.11190 8.70634
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.023170 B = 0.001819 C = 0.001725
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1208.151263 B =15391.599400 C =16231.630032
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.078 4.078
3 C 0.223 3.777
4 N -0.532 5.532
5 C 0.315 3.685
6 N -0.532 5.532
7 C 0.190 3.810
8 C -0.244 4.244
9 C 0.583 3.417
10 O -0.555 6.555
11 N -0.605 5.605
12 C 0.096 3.904
13 C -0.112 4.112
14 C 0.081 3.919
15 H 0.102 0.898
16 N -0.660 5.660
17 C 0.063 3.937
18 C 0.438 3.562
19 O -0.622 6.622
20 N -0.574 5.574
21 C -0.332 4.332
22 H 0.080 0.920
23 C -0.014 4.014
24 N -0.920 5.920
25 Si 0.993 3.007
26 H -0.273 1.273
27 H -0.272 1.272
28 H -0.271 1.271
29 C 0.079 3.921
30 H 0.045 0.955
31 H 0.060 0.940
32 H 0.076 0.924
33 H 0.100 0.900
34 H 0.077 0.923
35 H 0.235 0.765
36 H 0.195 0.805
37 H 0.082 0.918
38 H 0.092 0.908
39 H 0.101 0.899
40 H 0.086 0.914
41 H 0.349 0.651
42 H 0.066 0.934
43 H 0.108 0.892
44 H 0.396 0.604
45 H 0.277 0.723
46 H 0.072 0.928
47 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.370 11.030 -26.333 28.748
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.116 4.116
3 C 0.076 3.924
4 N -0.246 5.246
5 C 0.029 3.971
6 N -0.246 5.246
7 C 0.024 3.976
8 C -0.252 4.252
9 C 0.371 3.629
10 O -0.434 6.434
11 N -0.338 5.338
12 C -0.026 4.026
13 C -0.150 4.150
14 C -0.030 4.030
15 H 0.120 0.880
16 N -0.291 5.291
17 C -0.070 4.070
18 C 0.225 3.775
19 O -0.509 6.509
20 N -0.211 5.211
21 C -0.462 4.462
22 H 0.098 0.902
23 C -0.214 4.214
24 N -0.561 5.561
25 Si 0.817 3.183
26 H -0.197 1.197
27 H -0.197 1.197
28 H -0.196 1.196
29 C -0.046 4.046
30 H 0.064 0.936
31 H 0.079 0.921
32 H 0.095 0.905
33 H 0.119 0.881
34 H 0.096 0.904
35 H 0.251 0.749
36 H 0.211 0.789
37 H 0.101 0.899
38 H 0.110 0.890
39 H 0.120 0.880
40 H 0.104 0.896
41 H 0.169 0.831
42 H 0.084 0.916
43 H 0.126 0.874
44 H 0.230 0.770
45 H 0.087 0.913
46 H 0.091 0.909
47 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -3.063 11.682 -26.717 29.320
hybrid contribution -1.111 -1.194 1.689 2.347
sum -4.174 10.488 -25.029 27.457
Atomic orbital electron populations
1.21572 0.92681 1.03209 1.01606 1.20643 0.97895 0.88863 1.04169
1.22047 0.86415 0.96991 0.86936 1.68436 1.16570 1.10396 1.29151
1.25945 0.85967 0.86907 0.98286 1.68597 1.18370 1.38283 0.99318
1.23881 0.86825 0.89495 0.97437 1.21461 1.09557 0.99027 0.95133
1.17637 0.82088 0.80320 0.82853 1.90814 1.31463 1.42602 1.78508
1.48296 1.15753 1.55709 1.14039 1.22474 0.81961 0.98733 0.99469
1.22642 1.00074 0.97891 0.94420 1.22902 0.91933 1.00751 0.87461
0.87964 1.60183 1.57391 1.08736 1.02823 1.21623 1.02489 0.92247
0.90616 1.20864 0.82473 0.83854 0.90273 1.90500 1.55886 1.30821
1.73668 1.41949 1.63491 1.08247 1.07413 1.19703 1.48064 0.94715
0.83696 0.90216 1.26043 0.96480 0.94068 1.04809 1.69674 1.49685
0.98457 1.38324 0.84872 0.78239 0.78295 0.76944 1.19715 1.19740
1.19643 1.23139 0.99361 0.99150 0.82924 0.93562 0.92111 0.90459
0.88118 0.90440 0.74922 0.78872 0.89937 0.88957 0.88009 0.89582
0.83136 0.91635 0.87366 0.76982 0.91334 0.90944 0.91310
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.30 9.77 71.98 0.70 -1.60 16
2 C -0.08 -1.35 5.57 29.85 0.17 -1.18 16
3 C 0.22 4.09 6.11 42.92 0.26 4.35 16
4 N -0.53 -8.93 10.36 -187.05 -1.94 -10.87 16
5 C 0.31 4.10 12.27 180.84 2.22 6.32 16
6 N -0.53 -7.75 10.42 -198.97 -2.07 -9.83 16
7 C 0.19 2.69 9.76 85.07 0.83 3.52 16
8 C -0.24 -4.36 5.40 -19.91 -0.11 -4.47 16
9 C 0.58 12.47 6.68 86.79 0.58 13.05 16
10 O -0.56 -15.69 14.62 -3.89 -0.06 -15.74 16
11 N -0.60 -10.70 3.32 -814.75 -2.71 -13.40 16
12 C 0.10 1.10 5.93 86.73 0.51 1.61 16
13 C -0.11 -1.54 6.65 31.79 0.21 -1.33 16
14 C 0.08 1.53 3.40 46.39 0.16 1.69 16
15 H 0.10 1.83 7.83 -2.39 -0.02 1.81 16
16 N -0.66 -18.02 6.04 -488.00 -2.95 -20.97 16
17 C 0.06 1.97 6.03 85.56 0.52 2.49 16
18 C 0.44 20.05 7.82 87.66 0.69 20.74 16
19 O -0.62 -33.34 15.78 -3.09 -0.05 -33.39 16
20 N -0.57 -28.86 5.29 -306.98 -1.62 -30.48 16
21 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16
22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16
23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16
24 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16
25 Si 0.99 42.66 29.55 68.60 2.03 44.68 16
26 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16
27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16
28 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16
29 C 0.08 1.58 6.53 86.93 0.57 2.15 16
30 H 0.05 1.00 7.23 -2.39 -0.02 0.99 16
31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
33 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16
34 H 0.08 1.53 6.39 -2.39 -0.02 1.52 16
35 H 0.23 1.20 8.06 -2.91 -0.02 1.18 16
36 H 0.19 1.78 6.23 -2.91 -0.02 1.76 16
37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
38 H 0.09 0.70 5.80 -2.39 -0.01 0.69 16
39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
40 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16
41 H 0.35 10.16 7.89 -89.69 -0.71 9.45 16
42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
43 H 0.11 3.02 8.09 -2.39 -0.02 3.01 16
44 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16
45 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16
46 H 0.07 1.50 7.76 -2.39 -0.02 1.48 16
47 H 0.07 1.58 7.99 -2.38 -0.02 1.57 16
Total: -1.00 -72.95 390.46 -0.91 -73.86
By element:
Atomic # 1 Polarization: 36.41 SS G_CDS: -0.41 Total: 36.00 kcal
Atomic # 6 Polarization: 20.62 SS G_CDS: 8.59 Total: 29.21 kcal
Atomic # 7 Polarization: -123.61 SS G_CDS: -11.01 Total: -134.61 kcal
Atomic # 8 Polarization: -49.03 SS G_CDS: -0.11 Total: -49.13 kcal
Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal
Total: -72.95 -0.91 -73.86 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001187871838.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.320 kcal
(2) G-P(sol) polarization free energy of solvation -72.952 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.632 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.861 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds