Wall clock time and date at job start Wed Apr 1 2020 04:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47244 * 2 1 4 4 C 1.50703 * 109.46929 * 120.00075 * 2 1 3 5 5 O 1.21281 * 119.99866 * 111.81330 * 4 2 1 6 6 N 1.34773 * 120.00034 * 291.80447 * 4 2 1 7 7 C 1.47619 * 118.74510 * 4.30088 * 6 4 2 8 8 C 1.53825 * 111.28417 * 138.30641 * 7 6 4 9 9 C 1.51275 * 109.64511 * 319.97647 * 8 7 6 10 10 N 1.46200 * 109.09169 * 92.40154 * 9 8 7 11 11 C 1.46906 * 110.99513 * 144.76411 * 10 9 8 12 12 C 1.50697 * 109.47144 * 63.86605 * 11 10 9 13 13 O 1.21295 * 119.99735 * 2.54939 * 12 11 10 14 14 N 1.34770 * 119.99862 * 182.55370 * 12 11 10 15 15 C 1.37100 * 119.99702 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00416 * 359.97438 * 15 14 12 17 17 C 1.38955 * 119.99579 * 179.97438 * 15 14 12 18 18 N 1.31402 * 120.00420 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99538 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47288 * 60.00194 * 19 17 15 21 21 H 1.48500 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47106 * 299.99894 * 19 17 15 23 23 C 1.41440 * 116.35190 * 272.96737 * 10 9 8 24 24 C 1.44880 * 118.74784 * 184.31807 * 6 4 2 25 25 C 1.52998 * 109.46675 * 239.99676 * 2 1 3 26 26 F 1.39900 * 109.47386 * 299.99642 * 25 2 1 27 27 F 1.39901 * 109.47032 * 60.00321 * 25 2 1 28 28 H 1.09005 * 109.46775 * 278.03153 * 1 2 3 29 29 H 1.08993 * 109.47290 * 38.03283 * 1 2 3 30 30 H 1.09004 * 109.47066 * 158.03894 * 1 2 3 31 31 H 1.09001 * 109.47279 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47074 * 300.00202 * 3 2 1 33 33 H 1.09000 * 109.47184 * 59.99985 * 3 2 1 34 34 H 1.08997 * 109.11009 * 258.78115 * 7 6 4 35 35 H 1.08995 * 109.11448 * 17.90567 * 7 6 4 36 36 H 1.09008 * 109.44366 * 199.92201 * 8 7 6 37 37 H 1.09001 * 109.43482 * 80.03082 * 8 7 6 38 38 H 1.08998 * 109.53181 * 332.52701 * 9 8 7 39 39 H 1.08994 * 109.53659 * 212.29190 * 9 8 7 40 40 H 1.08999 * 109.46691 * 183.86549 * 11 10 9 41 41 H 1.09005 * 109.47006 * 303.86068 * 11 10 9 42 42 H 0.96997 * 120.00656 * 359.97438 * 14 12 11 43 43 H 0.97002 * 120.00245 * 179.97438 * 18 17 15 44 44 H 1.08991 * 109.39021 * 183.64112 * 23 10 9 45 45 H 1.08994 * 109.38970 * 303.33405 * 23 10 9 46 46 H 1.08998 * 109.43708 * 149.66193 * 24 6 4 47 47 H 1.08997 * 109.43918 * 29.78895 * 24 6 4 48 48 H 1.09001 * 109.46868 * 179.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6024 -1.7758 1.1254 6 7 1.8482 -0.1619 2.4477 7 6 1.0677 1.0866 2.5530 8 6 0.1170 1.0506 3.7618 9 6 -0.4961 -0.3268 3.8857 10 7 0.3264 -1.1374 4.7824 11 6 -0.5056 -2.0469 5.5815 12 6 -1.1966 -3.0276 4.6695 13 8 -0.9782 -3.0039 3.4766 14 7 -2.0572 -3.9308 5.1794 15 6 -2.6854 -4.8233 4.3497 16 1 -2.4909 -4.8024 3.2875 17 6 -3.5722 -5.7549 4.8754 18 7 -3.8084 -5.7808 6.1678 19 14 -4.4287 -6.9706 3.7448 20 1 -3.4123 -7.7975 3.0460 21 1 -5.3174 -7.8502 4.5460 22 1 -5.2379 -6.2301 2.7438 23 6 1.4076 -1.8295 4.1886 24 6 2.4241 -0.8199 3.6029 25 6 2.0399 -0.7213 -1.2492 26 9 1.5736 -2.0403 -1.2491 27 9 1.5736 -0.0618 -2.3915 28 1 -0.3633 0.1436 1.0176 29 1 -0.3633 0.8094 -0.6331 30 1 -0.3633 -0.9531 -0.3843 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7526 1.9275 2.6622 35 1 0.4821 1.2193 1.6433 36 1 -0.6734 1.7885 3.6239 37 1 0.6749 1.2825 4.6690 38 1 -0.5366 -0.7974 2.9034 39 1 -1.5037 -0.2420 4.2924 40 1 0.1235 -2.5886 6.2878 41 1 -1.2522 -1.4705 6.1280 42 1 -2.2315 -3.9499 6.1333 43 1 -4.4278 -6.4309 6.5347 44 1 1.9010 -2.4441 4.9415 45 1 1.0326 -2.4697 3.3902 46 1 2.6716 -0.0747 4.3588 47 1 3.3297 -1.3484 3.3053 48 1 3.1299 -0.7210 -1.2495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197082922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:54 Heat of formation + Delta-G solvation = -140.406065 kcal Electronic energy + Delta-G solvation = -33484.894015 eV Core-core repulsion = 28825.729241 eV Total energy + Delta-G solvation = -4659.164774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.99971 -46.92442 -40.93844 -39.04133 -37.17916 -36.01416 -34.70523 -33.74169 -32.49875 -31.29950 -29.20014 -27.80939 -27.05230 -26.45292 -25.54021 -24.22165 -23.23661 -21.08556 -20.65439 -19.43415 -19.04464 -17.88721 -17.61524 -17.25130 -16.88912 -16.35164 -16.12105 -15.80880 -15.37939 -15.20573 -14.87951 -14.62154 -14.33513 -14.20369 -13.93840 -13.76043 -13.66048 -13.53419 -13.32140 -13.11203 -12.79366 -12.67155 -12.45767 -12.36422 -12.28530 -11.92310 -11.79193 -11.55321 -11.49829 -11.42572 -11.20325 -11.07768 -11.00916 -10.82078 -10.71447 -10.45519 -10.36222 -10.23501 -9.63549 -9.49174 -9.05317 -8.63632 -7.99088 -7.44560 -6.43972 -3.85067 2.52720 2.83550 3.18332 3.24423 3.29534 3.60181 3.85767 3.95405 4.10628 4.15877 4.25109 4.28203 4.60059 4.70121 4.88721 4.89805 4.99544 5.07238 5.09748 5.21717 5.22300 5.31459 5.37791 5.39491 5.47163 5.51996 5.59197 5.62190 5.69684 5.74396 5.82160 5.94695 5.99595 6.02077 6.07276 6.09306 6.25442 6.48330 6.51937 6.80653 7.25166 7.36889 7.52629 7.74117 8.02706 8.10438 8.57703 9.15050 9.51066 10.02044 10.72675 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.003425 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.253840 B = 8172.815046 C = 9573.322305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.134 4.134 3 C -0.164 4.164 4 C 0.525 3.475 5 O -0.523 6.523 6 N -0.595 5.595 7 C 0.086 3.914 8 C -0.134 4.134 9 C 0.071 3.929 10 N -0.535 5.535 11 C 0.049 3.951 12 C 0.404 3.596 13 O -0.591 6.591 14 N -0.558 5.558 15 C -0.301 4.301 16 H 0.101 0.899 17 C 0.025 3.975 18 N -0.900 5.900 19 Si 0.929 3.071 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.044 3.956 24 C 0.123 3.877 25 C 0.287 3.713 26 F -0.187 7.187 27 F -0.204 7.204 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.097 18.508 -5.727 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.138 4.138 3 C -0.221 4.221 4 C 0.311 3.689 5 O -0.399 6.399 6 N -0.327 5.327 7 C -0.036 4.036 8 C -0.173 4.173 9 C -0.057 4.057 10 N -0.257 5.257 11 C -0.082 4.082 12 C 0.189 3.811 13 O -0.477 6.477 14 N -0.194 5.194 15 C -0.431 4.431 16 H 0.119 0.881 17 C -0.177 4.177 18 N -0.541 5.541 19 Si 0.756 3.244 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.199 1.199 23 C -0.086 4.086 24 C 0.000 4.000 25 C 0.233 3.767 26 F -0.168 7.168 27 F -0.185 7.185 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.621 18.116 -6.189 22.395 hybrid contribution -1.143 -1.364 -0.388 1.821 sum 10.478 16.753 -6.577 20.825 Atomic orbital electron populations 1.22134 0.90346 1.04499 1.04420 1.21831 1.00182 0.98197 0.93609 1.22394 1.02099 0.92387 1.05202 1.19952 0.79554 0.85061 0.84344 1.90769 1.42332 1.20597 1.86178 1.47605 1.53058 1.25722 1.06345 1.22723 0.94416 0.85426 1.01038 1.21971 0.98769 0.98326 0.98199 1.21459 0.95137 0.91806 0.97307 1.58892 1.11232 1.26303 1.29313 1.22060 0.96701 0.93781 0.95693 1.21104 0.84581 0.85536 0.89836 1.90505 1.66836 1.74313 1.16068 1.42007 1.37788 1.29249 1.10348 1.19656 1.20690 1.09857 0.92879 0.88131 1.25256 0.97644 0.98553 0.96278 1.69596 1.36352 1.37010 1.11159 0.85947 0.79098 0.79891 0.79488 1.19861 1.20895 1.19914 1.21796 0.91592 0.95460 0.99779 1.21594 0.96111 0.95845 0.86496 1.21411 0.97814 0.75505 0.81955 1.93045 1.90697 1.36534 1.96503 1.92960 1.91264 1.81106 1.53173 0.89710 0.90514 0.90590 0.91561 0.90463 0.88890 0.91509 0.88253 0.90494 0.90226 0.92115 0.91645 0.89528 0.89504 0.77459 0.91767 0.90919 0.91222 0.90235 0.89846 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 7.78 37.16 0.29 -1.53 16 2 C -0.13 -1.52 0.46 -155.66 -0.07 -1.59 16 3 C -0.16 -1.20 7.83 37.15 0.29 -0.91 16 4 C 0.52 7.54 6.31 -10.99 -0.07 7.47 16 5 O -0.52 -9.64 14.76 5.56 0.08 -9.56 16 6 N -0.59 -7.38 2.18 -172.43 -0.38 -7.76 16 7 C 0.09 0.78 3.70 -3.00 -0.01 0.77 16 8 C -0.13 -1.34 5.78 -27.17 -0.16 -1.50 16 9 C 0.07 1.04 4.19 -5.07 -0.02 1.02 16 10 N -0.53 -8.26 3.99 -240.94 -0.96 -9.22 16 11 C 0.05 0.84 5.57 -4.97 -0.03 0.81 16 12 C 0.40 9.28 7.24 -10.99 -0.08 9.20 16 13 O -0.59 -15.48 12.16 5.54 0.07 -15.41 16 14 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 15 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 16 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 19 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.04 0.71 4.94 -5.74 -0.03 0.69 16 24 C 0.12 1.60 5.48 -3.97 -0.02 1.58 16 25 C 0.29 3.55 3.84 37.16 0.14 3.70 16 26 F -0.19 -3.10 15.44 2.25 0.03 -3.06 16 27 F -0.20 -2.41 16.54 2.25 0.04 -2.37 16 28 H 0.08 1.00 4.43 -51.93 -0.23 0.77 16 29 H 0.08 0.69 7.94 -51.93 -0.41 0.28 16 30 H 0.08 1.09 7.31 -51.93 -0.38 0.71 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.49 7.78 -51.93 -0.40 0.09 16 33 H 0.09 0.56 3.93 -51.93 -0.20 0.36 16 34 H 0.07 0.45 7.39 -51.93 -0.38 0.06 16 35 H 0.10 0.83 2.90 -51.93 -0.15 0.68 16 36 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.08 0.78 7.98 -51.93 -0.41 0.37 16 38 H 0.06 1.10 5.30 -51.93 -0.27 0.82 16 39 H 0.06 1.01 7.59 -51.93 -0.39 0.62 16 40 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 41 H 0.09 1.34 7.96 -51.93 -0.41 0.92 16 42 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 45 H 0.07 1.51 6.00 -51.93 -0.31 1.20 16 46 H 0.08 0.87 8.11 -51.93 -0.42 0.44 16 47 H 0.08 1.13 7.35 -51.93 -0.38 0.75 16 48 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -33.62 368.10 -6.63 -40.25 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.69 Total: 11.43 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -0.01 Total: 11.69 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.67 Total: -54.88 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: 0.15 Total: -24.97 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.07 Total: -5.43 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.62 -6.63 -40.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197082922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.157 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds