Wall clock time and date at job start Wed Apr 1 2020 04:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47244 * 2 1 4 4 C 1.50703 * 109.46929 * 120.00075 * 2 1 3 5 5 O 1.21281 * 119.99866 * 111.81330 * 4 2 1 6 6 N 1.34773 * 120.00034 * 291.80447 * 4 2 1 7 7 C 1.47619 * 118.74510 * 4.30088 * 6 4 2 8 8 C 1.53825 * 111.28417 * 138.30641 * 7 6 4 9 9 C 1.51275 * 109.64511 * 319.97647 * 8 7 6 10 10 N 1.46200 * 109.09169 * 92.40154 * 9 8 7 11 11 C 1.46906 * 110.99513 * 144.76411 * 10 9 8 12 12 C 1.50697 * 109.47144 * 63.86605 * 11 10 9 13 13 O 1.21295 * 119.99735 * 2.54939 * 12 11 10 14 14 N 1.34770 * 119.99862 * 182.55370 * 12 11 10 15 15 C 1.37100 * 119.99702 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00416 * 359.97438 * 15 14 12 17 17 C 1.38955 * 119.99579 * 179.97438 * 15 14 12 18 18 N 1.31402 * 120.00420 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99538 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47288 * 60.00194 * 19 17 15 21 21 H 1.48500 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47106 * 299.99894 * 19 17 15 23 23 C 1.41440 * 116.35190 * 272.96737 * 10 9 8 24 24 C 1.44880 * 118.74784 * 184.31807 * 6 4 2 25 25 C 1.52998 * 109.46675 * 239.99676 * 2 1 3 26 26 F 1.39900 * 109.47386 * 299.99642 * 25 2 1 27 27 F 1.39901 * 109.47032 * 60.00321 * 25 2 1 28 28 H 1.09005 * 109.46775 * 278.03153 * 1 2 3 29 29 H 1.08993 * 109.47290 * 38.03283 * 1 2 3 30 30 H 1.09004 * 109.47066 * 158.03894 * 1 2 3 31 31 H 1.09001 * 109.47279 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47074 * 300.00202 * 3 2 1 33 33 H 1.09000 * 109.47184 * 59.99985 * 3 2 1 34 34 H 1.08997 * 109.11009 * 258.78115 * 7 6 4 35 35 H 1.08995 * 109.11448 * 17.90567 * 7 6 4 36 36 H 1.09008 * 109.44366 * 199.92201 * 8 7 6 37 37 H 1.09001 * 109.43482 * 80.03082 * 8 7 6 38 38 H 1.08998 * 109.53181 * 332.52701 * 9 8 7 39 39 H 1.08994 * 109.53659 * 212.29190 * 9 8 7 40 40 H 1.08999 * 109.46691 * 183.86549 * 11 10 9 41 41 H 1.09005 * 109.47006 * 303.86068 * 11 10 9 42 42 H 0.96997 * 120.00656 * 359.97438 * 14 12 11 43 43 H 0.97002 * 120.00245 * 179.97438 * 18 17 15 44 44 H 1.08991 * 109.39021 * 183.64112 * 23 10 9 45 45 H 1.08994 * 109.38970 * 303.33405 * 23 10 9 46 46 H 1.08998 * 109.43708 * 149.66193 * 24 6 4 47 47 H 1.08997 * 109.43918 * 29.78895 * 24 6 4 48 48 H 1.09001 * 109.46868 * 179.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6024 -1.7758 1.1254 6 7 1.8482 -0.1619 2.4477 7 6 1.0677 1.0866 2.5530 8 6 0.1170 1.0506 3.7618 9 6 -0.4961 -0.3268 3.8857 10 7 0.3264 -1.1374 4.7824 11 6 -0.5056 -2.0469 5.5815 12 6 -1.1966 -3.0276 4.6695 13 8 -0.9782 -3.0039 3.4766 14 7 -2.0572 -3.9308 5.1794 15 6 -2.6854 -4.8233 4.3497 16 1 -2.4909 -4.8024 3.2875 17 6 -3.5722 -5.7549 4.8754 18 7 -3.8084 -5.7808 6.1678 19 14 -4.4287 -6.9706 3.7448 20 1 -3.4123 -7.7975 3.0460 21 1 -5.3174 -7.8502 4.5460 22 1 -5.2379 -6.2301 2.7438 23 6 1.4076 -1.8295 4.1886 24 6 2.4241 -0.8199 3.6029 25 6 2.0399 -0.7213 -1.2492 26 9 1.5736 -2.0403 -1.2491 27 9 1.5736 -0.0618 -2.3915 28 1 -0.3633 0.1436 1.0176 29 1 -0.3633 0.8094 -0.6331 30 1 -0.3633 -0.9531 -0.3843 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7526 1.9275 2.6622 35 1 0.4821 1.2193 1.6433 36 1 -0.6734 1.7885 3.6239 37 1 0.6749 1.2825 4.6690 38 1 -0.5366 -0.7974 2.9034 39 1 -1.5037 -0.2420 4.2924 40 1 0.1235 -2.5886 6.2878 41 1 -1.2522 -1.4705 6.1280 42 1 -2.2315 -3.9499 6.1333 43 1 -4.4278 -6.4309 6.5347 44 1 1.9010 -2.4441 4.9415 45 1 1.0326 -2.4697 3.3902 46 1 2.6716 -0.0747 4.3588 47 1 3.3297 -1.3484 3.3053 48 1 3.1299 -0.7210 -1.2495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197082922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:53 Heat of formation + Delta-G solvation = -165.043681 kcal Electronic energy + Delta-G solvation = -33485.962382 eV Core-core repulsion = 28825.729241 eV Total energy + Delta-G solvation = -4660.233141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.04728 -48.00851 -42.01004 -40.63552 -38.63717 -37.09533 -36.11818 -35.45874 -33.52160 -33.34117 -30.53035 -28.59710 -28.14987 -27.73192 -26.74424 -25.83887 -24.36651 -22.20905 -21.79065 -20.98784 -20.29303 -19.85457 -18.61290 -18.29816 -18.11731 -17.64675 -17.44568 -16.96681 -16.61182 -16.58440 -16.30904 -16.09885 -15.57393 -15.56560 -15.44921 -15.00716 -14.81138 -14.75134 -14.43918 -14.34088 -13.98913 -13.66635 -13.57385 -13.51025 -13.34790 -13.17461 -13.06878 -13.01824 -12.85047 -12.67985 -12.50464 -12.33727 -12.27873 -12.22279 -12.15886 -11.87386 -11.72675 -11.51553 -11.31656 -10.84797 -10.67867 -10.04827 -9.66154 -9.01580 -8.50358 -6.00363 1.32383 1.34855 1.44862 1.45496 1.87702 2.00289 2.24508 2.67178 2.95955 3.04372 3.15300 3.21595 3.24787 3.39856 3.73674 3.83553 4.02329 4.03862 4.09039 4.21372 4.22321 4.33743 4.37603 4.42001 4.47027 4.56838 4.64744 4.65085 4.68687 4.71328 4.75886 4.83038 4.89497 4.93724 5.07499 5.13227 5.18886 5.24017 5.34872 5.41443 5.67192 5.89362 6.06612 6.22831 6.44034 6.55443 7.04931 7.08169 7.51907 8.08398 8.64699 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.003425 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.253840 B = 8172.815046 C = 9573.322305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.157 4.157 4 C 0.514 3.486 5 O -0.577 6.577 6 N -0.592 5.592 7 C 0.078 3.922 8 C -0.123 4.123 9 C 0.068 3.932 10 N -0.513 5.513 11 C 0.056 3.944 12 C 0.404 3.596 13 O -0.626 6.626 14 N -0.571 5.571 15 C -0.335 4.335 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.916 5.916 19 Si 0.987 3.013 20 H -0.277 1.277 21 H -0.265 1.265 22 H -0.273 1.273 23 C 0.047 3.953 24 C 0.131 3.869 25 C 0.277 3.723 26 F -0.218 7.218 27 F -0.199 7.199 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.020 0.980 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.396 0.604 43 H 0.279 0.721 44 H 0.076 0.924 45 H 0.009 0.991 46 H 0.116 0.884 47 H 0.073 0.927 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.563 21.892 -4.861 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.131 4.131 3 C -0.214 4.214 4 C 0.302 3.698 5 O -0.457 6.457 6 N -0.323 5.323 7 C -0.042 4.042 8 C -0.161 4.161 9 C -0.060 4.060 10 N -0.235 5.235 11 C -0.075 4.075 12 C 0.191 3.809 13 O -0.514 6.514 14 N -0.208 5.208 15 C -0.465 4.465 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.557 5.557 19 Si 0.810 3.190 20 H -0.203 1.203 21 H -0.189 1.189 22 H -0.198 1.198 23 C -0.084 4.084 24 C 0.007 3.993 25 C 0.224 3.776 26 F -0.200 7.200 27 F -0.180 7.180 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.027 0.973 46 H 0.134 0.866 47 H 0.092 0.908 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.074 21.557 -5.293 25.269 hybrid contribution -1.280 -2.404 -0.670 2.805 sum 10.793 19.153 -5.963 22.779 Atomic orbital electron populations 1.22135 0.90836 1.03490 1.04669 1.21837 0.99584 1.00315 0.91367 1.22450 1.02839 0.89098 1.06978 1.20582 0.78833 0.84571 0.85830 1.90739 1.44935 1.22940 1.87077 1.47749 1.52601 1.26430 1.05476 1.23071 0.95032 0.84943 1.01123 1.21929 0.99695 0.95287 0.99212 1.21556 0.95389 0.94215 0.94815 1.59145 1.10543 1.24840 1.28976 1.22187 0.97325 0.92994 0.95015 1.22329 0.83210 0.85217 0.90190 1.90515 1.67452 1.75100 1.18305 1.42077 1.38695 1.29790 1.10221 1.19523 1.22748 1.12069 0.92112 0.91223 1.25948 0.97630 0.99499 0.97756 1.69643 1.36558 1.37520 1.11982 0.85094 0.78084 0.77861 0.77925 1.20285 1.18904 1.19799 1.21728 0.92628 0.95992 0.98027 1.21499 0.94455 0.95927 0.87404 1.21808 0.98954 0.74206 0.82679 1.92980 1.91138 1.39166 1.96703 1.92959 1.91348 1.80745 1.52989 0.89951 0.87374 0.94548 0.90456 0.88810 0.86939 0.87092 0.87513 0.87554 0.88815 0.96117 0.92545 0.87575 0.86833 0.76960 0.91176 0.90553 0.97311 0.86571 0.90815 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 7.78 71.98 0.56 -3.00 16 2 C -0.13 -2.76 0.46 -52.93 -0.02 -2.79 16 3 C -0.16 -1.74 7.83 71.98 0.56 -1.17 16 4 C 0.51 14.89 6.31 87.66 0.55 15.44 16 5 O -0.58 -22.52 14.76 -3.03 -0.04 -22.57 16 6 N -0.59 -13.83 2.18 -817.84 -1.78 -15.61 16 7 C 0.08 1.12 3.70 86.44 0.32 1.44 16 8 C -0.12 -1.99 5.78 30.31 0.18 -1.81 16 9 C 0.07 1.94 4.19 85.87 0.36 2.30 16 10 N -0.51 -15.35 3.99 -916.20 -3.66 -19.01 16 11 C 0.06 1.89 5.57 85.55 0.48 2.36 16 12 C 0.40 19.22 7.24 87.66 0.63 19.86 16 13 O -0.63 -34.91 12.16 -3.08 -0.04 -34.95 16 14 N -0.57 -29.74 5.29 -306.99 -1.62 -31.37 16 15 C -0.33 -19.59 9.68 84.04 0.81 -18.77 16 16 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 17 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 18 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 19 Si 0.99 44.50 29.55 68.60 2.03 46.53 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C 0.05 1.55 4.94 87.91 0.43 1.98 16 24 C 0.13 3.26 5.48 87.29 0.48 3.73 16 25 C 0.28 6.92 3.84 71.98 0.28 7.19 16 26 F -0.22 -7.78 15.44 44.97 0.69 -7.09 16 27 F -0.20 -4.55 16.54 44.97 0.74 -3.80 16 28 H 0.08 1.93 4.43 -2.38 -0.01 1.92 16 29 H 0.11 1.74 7.94 -2.39 -0.02 1.72 16 30 H 0.04 1.11 7.31 -2.38 -0.02 1.09 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.79 7.78 -2.39 -0.02 0.77 16 33 H 0.11 0.79 3.93 -2.39 -0.01 0.78 16 34 H 0.11 0.77 7.39 -2.39 -0.02 0.75 16 35 H 0.11 1.41 2.90 -2.39 -0.01 1.40 16 36 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.09 1.34 7.98 -2.39 -0.02 1.32 16 38 H 0.02 0.77 5.30 -2.39 -0.01 0.75 16 39 H 0.06 1.69 7.59 -2.39 -0.02 1.67 16 40 H 0.11 3.20 7.90 -2.39 -0.02 3.18 16 41 H 0.11 3.27 7.96 -2.38 -0.02 3.25 16 42 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 43 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.08 2.41 7.83 -2.39 -0.02 2.39 16 45 H 0.01 0.40 6.00 -2.39 -0.01 0.39 16 46 H 0.12 2.08 8.11 -2.39 -0.02 2.06 16 47 H 0.07 2.00 7.35 -2.39 -0.02 1.99 16 48 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -80.94 368.10 2.98 -77.96 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.28 Total: 32.95 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 6.09 Total: 26.80 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -6.78 Total: -115.84 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -0.08 Total: -57.52 kcal Atomic # 9 Polarization: -12.33 SS G_CDS: 1.44 Total: -10.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -80.94 2.98 -77.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197082922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.080 kcal (2) G-P(sol) polarization free energy of solvation -80.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds