Wall clock time and date at job start Wed Apr 1 2020 04:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.50701 * 109.46854 * 239.99977 * 2 1 3 5 5 O 1.21277 * 119.99847 * 118.37072 * 4 2 1 6 6 N 1.34778 * 120.00078 * 298.36606 * 4 2 1 7 7 C 1.46921 * 120.62934 * 4.79972 * 6 4 2 8 8 C 1.52759 * 109.01016 * 233.58243 * 7 6 4 9 9 C 1.53043 * 109.38250 * 305.59226 * 8 7 6 10 10 N 1.46896 * 109.44843 * 181.25332 * 9 8 7 11 11 C 1.46898 * 111.00246 * 84.93836 * 10 9 8 12 12 C 1.50699 * 109.47270 * 179.97438 * 11 10 9 13 13 O 1.21295 * 120.00167 * 359.97438 * 12 11 10 14 14 N 1.34781 * 120.00372 * 179.97438 * 12 11 10 15 15 C 1.37092 * 120.00298 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99772 * 0.02562 * 15 14 12 17 17 C 1.38946 * 119.99839 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99981 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00183 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47177 * 90.00087 * 19 17 15 21 21 H 1.48499 * 109.47242 * 209.99829 * 19 17 15 22 22 H 1.48502 * 109.47057 * 329.99895 * 19 17 15 23 23 C 1.53043 * 109.53890 * 61.23750 * 9 8 7 24 24 C 1.46928 * 120.62805 * 185.07810 * 6 4 2 25 25 C 1.53001 * 109.47248 * 119.99906 * 2 1 3 26 26 F 1.39894 * 109.47189 * 306.59048 * 25 2 1 27 27 F 1.39900 * 109.46837 * 186.58511 * 25 2 1 28 28 H 1.08996 * 109.47231 * 297.29526 * 1 2 3 29 29 H 1.09002 * 109.47162 * 57.29710 * 1 2 3 30 30 H 1.09001 * 109.47041 * 177.30068 * 1 2 3 31 31 H 1.08996 * 109.47137 * 183.68072 * 3 2 1 32 32 H 1.09006 * 109.47148 * 303.67959 * 3 2 1 33 33 H 1.09000 * 109.47258 * 63.67398 * 3 2 1 34 34 H 1.08995 * 109.59102 * 353.42053 * 7 6 4 35 35 H 1.09001 * 109.58541 * 113.84098 * 7 6 4 36 36 H 1.08998 * 109.56721 * 185.55288 * 8 7 6 37 37 H 1.08999 * 109.38746 * 65.51655 * 8 7 6 38 38 H 1.08998 * 109.45830 * 301.21616 * 9 8 7 39 39 H 1.00900 * 111.00322 * 320.98466 * 10 9 8 40 40 H 1.09003 * 109.46988 * 299.99648 * 11 10 9 41 41 H 1.08998 * 109.47696 * 59.99767 * 11 10 9 42 42 H 0.97006 * 119.99558 * 0.02562 * 14 12 11 43 43 H 0.97006 * 120.00175 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.49297 * 178.68551 * 23 9 8 45 45 H 1.08999 * 109.52093 * 58.60590 * 23 9 8 46 46 H 1.08998 * 109.58401 * 246.15460 * 24 6 4 47 47 H 1.08996 * 109.58986 * 6.44476 * 24 6 4 48 48 H 1.09007 * 109.46661 * 66.58632 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7049 -0.1128 -2.0436 6 7 1.7340 -2.0100 -1.4273 7 6 0.8349 -2.7193 -0.5070 8 6 1.5315 -3.9831 -0.0060 9 6 1.9922 -4.8177 -1.2033 10 7 2.6357 -6.0479 -0.7234 11 6 1.6392 -7.0936 -0.4561 12 6 2.3352 -8.3376 0.0327 13 8 3.5427 -8.3520 0.1467 14 7 1.6160 -9.4345 0.3431 15 6 2.2493 -10.5663 0.7873 16 1 3.3244 -10.5790 0.8888 17 6 1.5078 -11.6972 1.1068 18 7 2.1148 -12.7823 1.5321 19 14 -0.3517 -11.6754 0.9305 20 1 -0.7247 -12.1212 -0.4361 21 1 -0.9547 -12.5915 1.9317 22 1 -0.8542 -10.2962 1.1557 23 6 2.9914 -4.0108 -2.0355 24 6 2.3068 -2.7458 -2.5627 25 6 2.0400 -0.7212 1.2492 26 9 1.4542 -0.1550 2.3865 27 9 3.4308 -0.5916 1.3273 28 1 -0.3633 0.4712 0.9132 29 1 -0.3633 0.5552 -0.8648 30 1 -0.3633 -1.0265 -0.0484 31 1 3.1279 1.4432 -0.0660 32 1 1.6238 1.9750 -0.8552 33 1 1.7314 1.9370 0.9211 34 1 0.5961 -2.0754 0.3394 35 1 -0.0814 -2.9933 -1.0300 36 1 0.8379 -4.5669 0.5991 37 1 2.3955 -3.7050 0.5975 38 1 1.1307 -5.0751 -1.8194 39 1 3.1978 -5.8665 0.0947 40 1 0.9414 -6.7444 0.3050 41 1 1.0942 -7.3190 -1.3727 42 1 0.6504 -9.4231 0.2516 43 1 1.5972 -13.5720 1.7548 44 1 3.3367 -4.6143 -2.8750 45 1 3.8420 -3.7319 -1.4137 46 1 1.5131 -3.0221 -3.2568 47 1 3.0372 -2.1185 -3.0737 48 1 1.7761 -1.7773 1.1922 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202431789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:21 Heat of formation + Delta-G solvation = -152.334250 kcal Electronic energy + Delta-G solvation = -31947.910998 eV Core-core repulsion = 27288.228979 eV Total energy + Delta-G solvation = -4659.682019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.49458 -47.42235 -41.16724 -38.86670 -38.00523 -36.04979 -35.25286 -33.96340 -31.81211 -31.65780 -31.26822 -27.93816 -27.31821 -26.99349 -25.10928 -23.75242 -23.62198 -22.19911 -20.90167 -19.73003 -19.33674 -18.41200 -18.16978 -18.01140 -17.55314 -16.66036 -16.09735 -15.90105 -15.66846 -15.14254 -15.05637 -14.96804 -14.73202 -14.27177 -14.20928 -14.15519 -13.97674 -13.82132 -13.73651 -13.27290 -13.12012 -12.91579 -12.86051 -12.80912 -12.64530 -12.54067 -12.43064 -12.20950 -11.99914 -11.79307 -11.67465 -11.60041 -11.24766 -11.17945 -10.89054 -10.80752 -10.63842 -10.18729 -10.01501 -9.61773 -9.16933 -8.65757 -8.24923 -8.20096 -6.34802 -3.86544 1.98562 2.38996 2.97530 3.02856 3.11370 3.17624 3.54496 3.59848 3.68253 3.87262 3.92364 4.06218 4.13057 4.25581 4.39452 4.48484 4.51436 4.62663 4.74272 4.82320 4.83639 4.98036 5.02127 5.08120 5.12449 5.18133 5.27717 5.29719 5.30970 5.35843 5.47757 5.49510 5.51974 5.63912 5.72474 5.75662 5.78570 5.86125 6.03585 6.13480 6.83661 7.01128 7.46644 7.53956 7.62041 8.10378 8.55343 8.91027 9.38076 9.77894 10.78272 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.002219 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.148954 B =12613.269142 C =12975.057155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.135 4.135 3 C -0.131 4.131 4 C 0.530 3.470 5 O -0.521 6.521 6 N -0.608 5.608 7 C 0.086 3.914 8 C -0.178 4.178 9 C 0.091 3.909 10 N -0.661 5.661 11 C 0.048 3.952 12 C 0.448 3.552 13 O -0.564 6.564 14 N -0.590 5.590 15 C -0.306 4.306 16 H 0.120 0.880 17 C 0.041 3.959 18 N -0.880 5.880 19 Si 0.881 3.119 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.270 1.270 23 C -0.123 4.123 24 C 0.113 3.887 25 C 0.259 3.741 26 F -0.195 7.195 27 F -0.194 7.194 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.352 0.648 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.370 0.630 43 H 0.274 0.726 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 26.894 -3.930 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.139 4.139 3 C -0.189 4.189 4 C 0.316 3.684 5 O -0.396 6.396 6 N -0.342 5.342 7 C -0.037 4.037 8 C -0.218 4.218 9 C -0.020 4.020 10 N -0.293 5.293 11 C -0.085 4.085 12 C 0.234 3.766 13 O -0.446 6.446 14 N -0.230 5.230 15 C -0.434 4.434 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.520 5.520 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.162 4.162 24 C -0.009 4.009 25 C 0.205 3.795 26 F -0.176 7.176 27 F -0.175 7.175 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.173 0.827 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.174 26.729 -4.826 28.364 hybrid contribution -1.946 0.030 0.995 2.186 sum -10.120 26.759 -3.831 28.864 Atomic orbital electron populations 1.22257 0.90109 1.04471 1.04869 1.21948 0.99794 0.99434 0.92700 1.21675 1.02898 0.91125 1.03188 1.19962 0.79882 0.81580 0.86951 1.90716 1.38188 1.65159 1.45525 1.48133 1.47637 1.09688 1.28769 1.22287 0.93400 0.94168 0.93856 1.22811 1.01803 0.96903 1.00258 1.21571 0.96674 0.89044 0.94725 1.60155 1.22442 1.06076 1.40587 1.21750 0.93943 0.92302 1.00511 1.19708 0.88132 0.84542 0.84248 1.90578 1.13876 1.83415 1.56717 1.42209 1.07880 1.12520 1.60343 1.19430 0.95851 0.87675 1.40484 0.86283 1.25050 0.98519 0.95273 0.97354 1.69623 1.36000 1.02671 1.43729 0.86661 0.85330 0.78291 0.79002 1.19591 1.20183 1.19572 1.21918 0.98380 0.94760 1.01094 1.21732 0.98625 0.93090 0.87493 1.22360 0.75154 0.99078 0.82889 1.92994 1.83772 1.87598 1.53283 1.93030 1.30705 1.97251 1.96516 0.89921 0.90285 0.90146 0.90793 0.90644 0.91113 0.88671 0.89897 0.89843 0.90918 0.90062 0.82741 0.93781 0.89445 0.79720 0.91577 0.89236 0.91187 0.91029 0.88590 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 7.99 37.16 0.30 -0.49 16 2 C -0.13 -1.03 0.47 -155.66 -0.07 -1.10 16 3 C -0.13 -1.05 7.50 37.16 0.28 -0.77 16 4 C 0.53 5.20 6.36 -10.98 -0.07 5.13 16 5 O -0.52 -6.93 15.40 5.56 0.09 -6.84 16 6 N -0.61 -4.90 2.97 -173.04 -0.51 -5.41 16 7 C 0.09 0.49 4.07 -3.94 -0.02 0.48 16 8 C -0.18 -1.31 4.99 -26.83 -0.13 -1.44 16 9 C 0.09 0.85 2.43 -67.67 -0.16 0.69 16 10 N -0.66 -9.05 5.87 -107.95 -0.63 -9.68 16 11 C 0.05 0.71 5.96 -4.98 -0.03 0.68 16 12 C 0.45 9.72 7.82 -10.98 -0.09 9.64 16 13 O -0.56 -14.77 15.78 5.54 0.09 -14.68 16 14 N -0.59 -13.57 5.09 -10.96 -0.06 -13.63 16 15 C -0.31 -8.49 10.16 -14.94 -0.15 -8.64 16 16 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 17 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 18 N -0.88 -25.40 13.96 55.50 0.77 -24.62 16 19 Si 0.88 18.85 27.74 -169.99 -4.71 14.13 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 23 C -0.12 -1.14 5.69 -26.61 -0.15 -1.29 16 24 C 0.11 0.94 6.42 -3.71 -0.02 0.91 16 25 C 0.26 2.11 3.93 37.16 0.15 2.25 16 26 F -0.20 -1.67 16.19 2.25 0.04 -1.63 16 27 F -0.19 -2.12 16.49 2.25 0.04 -2.09 16 28 H 0.08 0.35 7.56 -51.93 -0.39 -0.04 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.30 4.68 -51.93 -0.24 0.05 16 31 H 0.07 0.71 7.65 -51.93 -0.40 0.32 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.48 7.90 -51.93 -0.41 0.07 16 34 H 0.10 0.43 2.62 -51.93 -0.14 0.29 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.57 7.42 -51.93 -0.39 0.18 16 37 H 0.07 0.59 7.52 -51.93 -0.39 0.20 16 38 H 0.08 0.70 7.80 -51.93 -0.40 0.29 16 39 H 0.35 5.17 8.18 -39.29 -0.32 4.85 16 40 H 0.04 0.55 7.41 -51.93 -0.38 0.16 16 41 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 42 H 0.37 7.39 5.76 -40.82 -0.24 7.15 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.93 7.04 -51.93 -0.37 0.56 16 48 H 0.12 0.79 3.92 -51.92 -0.20 0.59 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -34.46 377.57 -6.26 -40.73 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.78 Total: 10.99 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.27 Total: 7.05 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.43 Total: -53.35 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.17 Total: -21.53 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.07 Total: -3.72 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.46 -6.26 -40.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202431789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.607 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds