Wall clock time and date at job start Wed Apr 1 2020 04:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.50701 * 109.46854 * 239.99977 * 2 1 3 5 5 O 1.21277 * 119.99847 * 118.37072 * 4 2 1 6 6 N 1.34778 * 120.00078 * 298.36606 * 4 2 1 7 7 C 1.46921 * 120.62934 * 4.79972 * 6 4 2 8 8 C 1.52759 * 109.01016 * 233.58243 * 7 6 4 9 9 C 1.53043 * 109.38250 * 305.59226 * 8 7 6 10 10 N 1.46896 * 109.44843 * 181.25332 * 9 8 7 11 11 C 1.46898 * 111.00246 * 84.93836 * 10 9 8 12 12 C 1.50699 * 109.47270 * 179.97438 * 11 10 9 13 13 O 1.21295 * 120.00167 * 359.97438 * 12 11 10 14 14 N 1.34781 * 120.00372 * 179.97438 * 12 11 10 15 15 C 1.37092 * 120.00298 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99772 * 0.02562 * 15 14 12 17 17 C 1.38946 * 119.99839 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99981 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00183 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47177 * 90.00087 * 19 17 15 21 21 H 1.48499 * 109.47242 * 209.99829 * 19 17 15 22 22 H 1.48502 * 109.47057 * 329.99895 * 19 17 15 23 23 C 1.53043 * 109.53890 * 61.23750 * 9 8 7 24 24 C 1.46928 * 120.62805 * 185.07810 * 6 4 2 25 25 C 1.53001 * 109.47248 * 119.99906 * 2 1 3 26 26 F 1.39894 * 109.47189 * 306.59048 * 25 2 1 27 27 F 1.39900 * 109.46837 * 186.58511 * 25 2 1 28 28 H 1.08996 * 109.47231 * 297.29526 * 1 2 3 29 29 H 1.09002 * 109.47162 * 57.29710 * 1 2 3 30 30 H 1.09001 * 109.47041 * 177.30068 * 1 2 3 31 31 H 1.08996 * 109.47137 * 183.68072 * 3 2 1 32 32 H 1.09006 * 109.47148 * 303.67959 * 3 2 1 33 33 H 1.09000 * 109.47258 * 63.67398 * 3 2 1 34 34 H 1.08995 * 109.59102 * 353.42053 * 7 6 4 35 35 H 1.09001 * 109.58541 * 113.84098 * 7 6 4 36 36 H 1.08998 * 109.56721 * 185.55288 * 8 7 6 37 37 H 1.08999 * 109.38746 * 65.51655 * 8 7 6 38 38 H 1.08998 * 109.45830 * 301.21616 * 9 8 7 39 39 H 1.00900 * 111.00322 * 320.98466 * 10 9 8 40 40 H 1.09003 * 109.46988 * 299.99648 * 11 10 9 41 41 H 1.08998 * 109.47696 * 59.99767 * 11 10 9 42 42 H 0.97006 * 119.99558 * 0.02562 * 14 12 11 43 43 H 0.97006 * 120.00175 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.49297 * 178.68551 * 23 9 8 45 45 H 1.08999 * 109.52093 * 58.60590 * 23 9 8 46 46 H 1.08998 * 109.58401 * 246.15460 * 24 6 4 47 47 H 1.08996 * 109.58986 * 6.44476 * 24 6 4 48 48 H 1.09007 * 109.46661 * 66.58632 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7049 -0.1128 -2.0436 6 7 1.7340 -2.0100 -1.4273 7 6 0.8349 -2.7193 -0.5070 8 6 1.5315 -3.9831 -0.0060 9 6 1.9922 -4.8177 -1.2033 10 7 2.6357 -6.0479 -0.7234 11 6 1.6392 -7.0936 -0.4561 12 6 2.3352 -8.3376 0.0327 13 8 3.5427 -8.3520 0.1467 14 7 1.6160 -9.4345 0.3431 15 6 2.2493 -10.5663 0.7873 16 1 3.3244 -10.5790 0.8888 17 6 1.5078 -11.6972 1.1068 18 7 2.1148 -12.7823 1.5321 19 14 -0.3517 -11.6754 0.9305 20 1 -0.7247 -12.1212 -0.4361 21 1 -0.9547 -12.5915 1.9317 22 1 -0.8542 -10.2962 1.1557 23 6 2.9914 -4.0108 -2.0355 24 6 2.3068 -2.7458 -2.5627 25 6 2.0400 -0.7212 1.2492 26 9 1.4542 -0.1550 2.3865 27 9 3.4308 -0.5916 1.3273 28 1 -0.3633 0.4712 0.9132 29 1 -0.3633 0.5552 -0.8648 30 1 -0.3633 -1.0265 -0.0484 31 1 3.1279 1.4432 -0.0660 32 1 1.6238 1.9750 -0.8552 33 1 1.7314 1.9370 0.9211 34 1 0.5961 -2.0754 0.3394 35 1 -0.0814 -2.9933 -1.0300 36 1 0.8379 -4.5669 0.5991 37 1 2.3955 -3.7050 0.5975 38 1 1.1307 -5.0751 -1.8194 39 1 3.1978 -5.8665 0.0947 40 1 0.9414 -6.7444 0.3050 41 1 1.0942 -7.3190 -1.3727 42 1 0.6504 -9.4231 0.2516 43 1 1.5972 -13.5720 1.7548 44 1 3.3367 -4.6143 -2.8750 45 1 3.8420 -3.7319 -1.4137 46 1 1.5131 -3.0221 -3.2568 47 1 3.0372 -2.1185 -3.0737 48 1 1.7761 -1.7773 1.1922 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202431789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:20 Heat of formation + Delta-G solvation = -179.132602 kcal Electronic energy + Delta-G solvation = -31949.073061 eV Core-core repulsion = 27288.228979 eV Total energy + Delta-G solvation = -4660.844082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.18659 -48.13360 -41.84875 -40.33618 -39.06823 -36.76867 -36.26443 -35.75757 -33.73985 -32.48191 -32.07966 -28.59030 -28.43409 -27.62951 -26.39775 -24.89640 -24.35088 -22.94172 -21.62402 -21.23721 -20.45088 -20.03288 -18.90623 -18.65929 -18.24200 -17.72430 -17.30920 -16.95001 -16.54733 -16.48024 -16.03774 -15.86519 -15.58759 -15.38645 -15.12928 -14.97555 -14.88245 -14.74254 -14.53640 -14.46539 -14.26081 -14.01810 -13.82954 -13.64078 -13.49861 -13.33429 -13.19569 -13.09347 -13.07577 -12.84781 -12.68213 -12.39145 -12.26775 -12.24144 -11.96503 -11.92015 -11.57398 -11.49602 -11.43329 -10.91636 -10.41641 -10.23231 -9.83571 -9.24386 -8.39587 -6.00916 1.27291 1.31499 1.38408 1.47126 1.75946 1.98862 2.25341 2.56351 2.73846 2.95728 3.00300 3.17021 3.28948 3.38403 3.62127 3.67479 3.83724 3.87630 3.95338 3.99404 4.13075 4.22061 4.30262 4.39620 4.45065 4.48117 4.59178 4.61226 4.64973 4.68740 4.71076 4.74471 4.78755 4.86343 4.99517 5.09589 5.11804 5.16410 5.26062 5.45151 5.54828 5.93690 6.11832 6.18618 6.39564 6.61818 6.90467 6.91873 7.42227 7.99915 8.78226 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.002219 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.148954 B =12613.269142 C =12975.057155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.131 4.131 3 C -0.132 4.132 4 C 0.525 3.475 5 O -0.566 6.566 6 N -0.605 5.605 7 C 0.084 3.916 8 C -0.174 4.174 9 C 0.094 3.906 10 N -0.684 5.684 11 C 0.064 3.936 12 C 0.446 3.554 13 O -0.618 6.618 14 N -0.591 5.591 15 C -0.329 4.329 16 H 0.052 0.948 17 C -0.019 4.019 18 N -0.937 5.937 19 Si 0.968 3.032 20 H -0.258 1.258 21 H -0.278 1.278 22 H -0.225 1.225 23 C -0.117 4.117 24 C 0.117 3.883 25 C 0.254 3.746 26 F -0.196 7.196 27 F -0.215 7.215 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.342 0.658 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.391 0.609 43 H 0.279 0.721 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.095 0.905 47 H 0.076 0.924 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.586 28.297 -4.293 32.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.135 4.135 3 C -0.189 4.189 4 C 0.313 3.687 5 O -0.444 6.444 6 N -0.337 5.337 7 C -0.038 4.038 8 C -0.214 4.214 9 C -0.016 4.016 10 N -0.315 5.315 11 C -0.068 4.068 12 C 0.234 3.766 13 O -0.503 6.503 14 N -0.233 5.233 15 C -0.458 4.458 16 H 0.070 0.930 17 C -0.217 4.217 18 N -0.578 5.578 19 Si 0.788 3.212 20 H -0.182 1.182 21 H -0.203 1.203 22 H -0.148 1.148 23 C -0.156 4.156 24 C -0.005 4.005 25 C 0.201 3.799 26 F -0.177 7.177 27 F -0.196 7.196 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.161 0.839 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.227 0.773 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.113 0.887 47 H 0.094 0.906 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.250 28.153 -5.190 31.545 hybrid contribution -0.179 -0.392 1.098 1.180 sum -13.428 27.761 -4.092 31.108 Atomic orbital electron populations 1.22312 0.87441 1.05950 1.05664 1.21955 1.01785 0.98504 0.91284 1.21665 1.01359 0.91980 1.03908 1.20356 0.79229 0.82053 0.87101 1.90697 1.40208 1.66321 1.47187 1.48218 1.47388 1.09232 1.28855 1.22537 0.93602 0.93350 0.94281 1.22766 1.01908 0.97458 0.99281 1.21636 0.96809 0.87510 0.95627 1.60120 1.23138 1.07889 1.40371 1.21683 0.93738 0.88790 1.02616 1.21154 0.87772 0.85985 0.81706 1.90560 1.16881 1.84632 1.58228 1.42026 1.08822 1.11562 1.60844 1.18988 0.93522 0.90553 1.42759 0.93012 1.26183 1.05776 0.93837 0.95886 1.69819 1.39112 1.03842 1.44989 0.85327 0.75917 0.80692 0.79313 1.18246 1.20296 1.14826 1.21832 0.98022 0.95215 1.00543 1.21655 0.98924 0.92026 0.87889 1.22660 0.74034 1.00200 0.82986 1.92991 1.83601 1.87747 1.53333 1.92992 1.32618 1.97384 1.96626 0.88849 0.89871 0.88258 0.93247 0.90456 0.89844 0.87173 0.86750 0.87992 0.92214 0.87794 0.83875 0.89801 0.86503 0.77334 0.91204 0.90023 0.93406 0.88657 0.90577 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 7.99 71.98 0.57 -0.42 16 2 C -0.13 -1.78 0.47 -52.93 -0.02 -1.80 16 3 C -0.13 -2.04 7.50 71.98 0.54 -1.50 16 4 C 0.53 9.71 6.36 87.66 0.56 10.26 16 5 O -0.57 -15.26 15.40 -3.02 -0.05 -15.31 16 6 N -0.60 -8.26 2.97 -819.76 -2.44 -10.70 16 7 C 0.08 0.59 4.07 86.22 0.35 0.94 16 8 C -0.17 -1.87 4.99 30.53 0.15 -1.72 16 9 C 0.09 1.45 2.43 44.94 0.11 1.56 16 10 N -0.68 -17.23 5.87 -495.44 -2.91 -20.14 16 11 C 0.06 1.65 5.96 85.56 0.51 2.16 16 12 C 0.45 18.98 7.82 87.66 0.69 19.66 16 13 O -0.62 -33.52 15.78 -3.08 -0.05 -33.57 16 14 N -0.59 -26.52 5.09 -306.98 -1.56 -28.08 16 15 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 16 H 0.05 3.59 7.39 -2.91 -0.02 3.57 16 17 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 18 N -0.94 -55.99 13.96 21.66 0.30 -55.69 16 19 Si 0.97 37.21 27.74 68.60 1.90 39.11 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 21 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.23 -6.97 6.52 99.48 0.65 -6.33 16 23 C -0.12 -2.04 5.69 30.67 0.17 -1.86 16 24 C 0.12 1.75 6.42 86.36 0.55 2.31 16 25 C 0.25 3.70 3.93 71.98 0.28 3.98 16 26 F -0.20 -2.90 16.19 44.97 0.73 -2.18 16 27 F -0.21 -4.69 16.49 44.97 0.74 -3.95 16 28 H 0.09 0.44 7.56 -2.39 -0.02 0.43 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.24 4.68 -2.39 -0.01 0.23 16 31 H 0.05 1.00 7.65 -2.39 -0.02 0.98 16 32 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.08 1.03 7.90 -2.39 -0.02 1.02 16 34 H 0.11 0.48 2.62 -2.39 -0.01 0.47 16 35 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.10 0.80 7.42 -2.39 -0.02 0.78 16 37 H 0.06 0.83 7.52 -2.39 -0.02 0.81 16 38 H 0.10 1.20 7.80 -2.39 -0.02 1.18 16 39 H 0.34 9.78 8.18 -89.69 -0.73 9.04 16 40 H 0.08 1.57 7.41 -2.39 -0.02 1.56 16 41 H 0.12 2.43 8.05 -2.39 -0.02 2.41 16 42 H 0.39 14.10 5.76 -92.70 -0.53 13.56 16 43 H 0.28 15.19 8.31 -92.70 -0.77 14.42 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.48 7.04 -2.39 -0.02 1.46 16 48 H 0.14 1.45 3.92 -2.38 -0.01 1.44 16 Total: -1.00 -84.05 377.57 2.16 -81.89 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.30 Total: 33.65 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 5.79 Total: 14.97 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -6.61 Total: -114.62 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.10 Total: -48.88 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 1.47 Total: -6.13 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 1.90 Total: 39.11 kcal Total: -84.05 2.16 -81.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202431789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.240 kcal (2) G-P(sol) polarization free energy of solvation -84.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds