Wall clock time and date at job start Wed Apr 1 2020 04:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39903 * 109.47311 * 2 1 4 4 F 1.39891 * 109.47326 * 239.99403 * 2 1 3 5 5 C 1.53002 * 109.46827 * 119.99325 * 2 1 3 6 6 C 1.53003 * 109.47178 * 180.02562 * 5 2 1 7 7 C 1.50701 * 109.47105 * 180.02562 * 6 5 2 8 8 O 1.21284 * 120.00087 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99728 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.63425 * 0.02562 * 9 7 6 11 11 C 1.53192 * 108.77318 * 126.36858 * 10 9 7 12 12 C 1.53041 * 109.31320 * 54.63839 * 11 10 9 13 13 C 1.53033 * 109.53898 * 298.63305 * 12 11 10 14 14 H 1.09000 * 109.49457 * 301.41562 * 13 12 11 15 15 N 1.46894 * 109.49793 * 181.31580 * 13 12 11 16 16 C 1.46899 * 111.00242 * 85.16403 * 15 13 12 17 17 C 1.50694 * 109.47614 * 180.02562 * 16 15 13 18 18 O 1.21298 * 119.99764 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00355 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00274 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99836 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00058 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99882 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99970 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47306 * 59.99992 * 24 22 20 26 26 H 1.48500 * 109.47270 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46816 * 299.99772 * 24 22 20 28 28 C 1.46926 * 120.62994 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47820 * 300.00576 * 1 2 3 30 30 H 1.09003 * 109.46786 * 60.00308 * 1 2 3 31 31 H 1.08995 * 109.47265 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46800 * 60.00344 * 5 2 1 33 33 H 1.08996 * 109.47655 * 300.00371 * 5 2 1 34 34 H 1.08999 * 109.46842 * 60.00331 * 6 5 2 35 35 H 1.08999 * 109.46746 * 300.00361 * 6 5 2 36 36 H 1.08997 * 109.58859 * 246.15938 * 10 9 7 37 37 H 1.09001 * 109.58530 * 6.44176 * 10 9 7 38 38 H 1.09005 * 109.49451 * 174.58740 * 11 10 9 39 39 H 1.08994 * 109.50120 * 294.65354 * 11 10 9 40 40 H 1.08999 * 109.45610 * 58.65103 * 12 11 10 41 41 H 1.09004 * 109.46035 * 178.62071 * 12 11 10 42 42 H 1.00907 * 110.99892 * 209.11322 * 15 13 12 43 43 H 1.08999 * 109.46777 * 299.99800 * 16 15 13 44 44 H 1.09000 * 109.47541 * 59.99631 * 16 15 13 45 45 H 0.97003 * 119.99949 * 359.97438 * 19 17 16 46 46 H 0.97002 * 119.99548 * 179.97438 * 23 22 20 47 47 H 1.09006 * 109.58406 * 353.41879 * 28 9 7 48 48 H 1.09002 * 109.59019 * 113.83868 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1421 5 6 2.0399 -0.7211 1.2494 6 6 3.5699 -0.7206 1.2498 7 6 4.0722 -1.4314 2.4800 8 8 3.2840 -1.8934 3.2777 9 7 5.3972 -1.5538 2.6938 10 6 6.3643 -0.9989 1.7369 11 6 7.3352 -0.0850 2.4911 12 6 7.9696 -0.8635 3.6459 13 6 6.8783 -1.3163 4.6185 14 1 6.3409 -0.4452 4.9934 15 7 7.4913 -2.0362 5.7427 16 6 7.9389 -1.1024 6.7846 17 6 8.5614 -1.8755 7.9185 18 8 8.6255 -3.0856 7.8642 19 7 9.0470 -1.2226 8.9928 20 6 9.6129 -1.9260 10.0246 21 1 9.6700 -3.0034 9.9763 22 6 10.1140 -1.2527 11.1320 23 7 10.0449 0.0583 11.1906 24 14 10.8856 -2.2111 12.5375 25 1 12.0485 -2.9831 12.0305 26 1 11.3386 -1.2671 13.5905 27 1 9.8826 -3.1452 13.1091 28 6 5.9021 -2.2445 3.8882 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6766 -1.7489 1.2494 33 1 1.6766 -0.2073 2.1393 34 1 3.9329 0.3072 1.2500 35 1 3.9336 -1.2342 0.3598 36 1 6.9182 -1.8104 1.2650 37 1 5.8365 -0.4254 0.9750 38 1 8.1154 0.2572 1.8111 39 1 6.7937 0.7747 2.8856 40 1 8.4903 -1.7365 3.2525 41 1 8.6793 -0.2227 4.1693 42 1 6.8566 -2.7232 6.1213 43 1 8.6752 -0.4165 6.3657 44 1 7.0849 -0.5361 7.1563 45 1 8.9961 -0.2548 9.0361 46 1 10.3944 0.5282 11.9638 47 1 5.0695 -2.4908 4.5472 48 1 6.4184 -3.1575 3.5915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208436094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:52 Heat of formation + Delta-G solvation = -184.922044 kcal Electronic energy + Delta-G solvation = -30418.531763 eV Core-core repulsion = 25757.436632 eV Total energy + Delta-G solvation = -4661.095131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.40036 -47.36991 -40.55663 -38.52366 -37.73215 -35.18037 -34.62182 -33.85207 -32.44085 -31.42177 -31.19696 -29.94524 -26.51603 -26.31351 -24.75189 -23.80194 -22.73239 -21.97646 -20.51725 -19.41725 -19.04296 -18.08140 -17.88832 -17.86943 -16.76837 -16.51265 -16.23884 -16.00480 -15.84594 -15.33271 -14.90164 -14.67489 -14.48169 -14.27288 -14.10340 -13.92316 -13.79417 -13.74161 -13.66200 -13.53848 -13.25068 -13.08618 -12.88536 -12.75284 -12.51014 -12.34268 -12.18814 -11.90463 -11.71934 -11.53137 -11.46471 -11.29645 -11.11785 -11.06805 -10.88207 -10.77022 -10.43938 -10.21328 -10.09435 -9.49777 -8.92686 -8.46593 -8.11119 -7.96022 -6.41397 -3.82292 2.31123 2.58416 3.20606 3.26178 3.30616 3.31532 3.65285 3.81162 3.90793 3.96287 4.07490 4.25408 4.27258 4.50878 4.55809 4.65229 4.68121 4.74896 4.86161 4.94704 5.01072 5.02092 5.07077 5.18554 5.24140 5.26255 5.32109 5.39757 5.43029 5.47296 5.51338 5.64943 5.70357 5.77907 5.85101 5.95320 6.03492 6.13226 6.21946 6.31567 7.07080 7.19061 7.55351 7.60726 7.85299 8.06235 8.61352 9.17956 9.54293 10.05748 10.76251 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.001663 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.439591 B =16837.133692 C =17066.097344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.285 3.715 3 F -0.201 7.201 4 F -0.202 7.202 5 C -0.145 4.145 6 C -0.145 4.145 7 C 0.518 3.482 8 O -0.541 6.541 9 N -0.608 5.608 10 C 0.104 3.896 11 C -0.135 4.135 12 C -0.110 4.110 13 C 0.075 3.925 14 H 0.045 0.955 15 N -0.661 5.661 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.110 3.890 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.351 0.649 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.092 0.908 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.319 4.413 -25.422 30.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.249 3.751 3 F -0.182 7.182 4 F -0.183 7.183 5 C -0.183 4.183 6 C -0.185 4.185 7 C 0.306 3.694 8 O -0.418 6.418 9 N -0.341 5.341 10 C -0.019 4.019 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.036 4.036 14 H 0.063 0.937 15 N -0.294 5.294 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.013 4.013 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.171 0.829 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.111 0.889 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.990 3.448 -25.186 29.511 hybrid contribution -0.181 0.689 1.042 1.262 sum -15.171 4.136 -24.144 28.813 Atomic orbital electron populations 1.22762 0.91322 1.05665 1.05477 1.21185 0.94048 0.75701 0.84137 1.93017 1.90562 1.37779 1.96879 1.93010 1.90570 1.80938 1.53758 1.22405 0.95641 1.03677 0.96586 1.21664 0.96112 1.02926 0.97791 1.20458 0.81854 0.79673 0.87378 1.90719 1.54711 1.49085 1.47322 1.48057 1.05448 1.56794 1.23827 1.21852 0.91155 0.97607 0.91257 1.21944 0.98784 0.98429 0.98246 1.21557 0.97643 1.00460 0.95188 1.21840 0.93837 0.95645 0.92273 0.93660 1.60099 1.44582 1.15629 1.09094 1.21710 0.99440 0.94730 0.92154 1.19782 0.84921 0.88468 0.84214 1.90526 1.61721 1.13980 1.80472 1.41853 1.52403 1.09494 1.16235 1.19662 1.34326 0.93457 0.95522 0.87950 1.25266 0.97877 0.95727 0.99068 1.69608 1.46731 1.06672 1.31322 0.85907 0.79471 0.78830 0.79944 1.19876 1.20985 1.19920 1.21767 0.97779 0.94981 0.86753 0.89053 0.89977 0.89082 0.87865 0.87861 0.87978 0.88019 0.90763 0.89688 0.90203 0.91512 0.90779 0.91263 0.82863 0.89607 0.93839 0.77471 0.91826 0.88950 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.83 9.38 37.16 0.35 -0.48 16 2 C 0.29 1.87 2.11 -26.73 -0.06 1.81 16 3 F -0.20 -1.64 16.54 2.25 0.04 -1.60 16 4 F -0.20 -1.60 16.54 2.25 0.04 -1.57 16 5 C -0.14 -0.99 4.09 -26.73 -0.11 -1.10 16 6 C -0.15 -1.05 3.80 -27.88 -0.11 -1.15 16 7 C 0.52 5.48 7.70 -10.99 -0.08 5.40 16 8 O -0.54 -7.68 15.39 5.55 0.09 -7.59 16 9 N -0.61 -5.98 2.97 -172.74 -0.51 -6.49 16 10 C 0.10 0.73 6.34 -3.71 -0.02 0.70 16 11 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 12 C -0.11 -1.17 5.40 -26.69 -0.14 -1.31 16 13 C 0.08 0.93 2.64 -67.58 -0.18 0.75 16 14 H 0.05 0.59 7.80 -51.93 -0.41 0.19 16 15 N -0.66 -10.58 5.93 -107.86 -0.64 -11.22 16 16 C 0.05 0.93 5.97 -4.98 -0.03 0.90 16 17 C 0.44 10.47 7.82 -10.99 -0.09 10.38 16 18 O -0.58 -15.90 15.78 5.54 0.09 -15.81 16 19 N -0.56 -14.38 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 24 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 C 0.11 1.28 5.70 -3.69 -0.02 1.26 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.70 8.10 -51.92 -0.42 0.28 16 33 H 0.10 0.73 8.10 -51.93 -0.42 0.30 16 34 H 0.10 0.64 7.35 -51.93 -0.38 0.26 16 35 H 0.10 0.61 7.60 -51.93 -0.39 0.22 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.42 5.93 -51.93 -0.31 0.12 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.79 7.44 -51.93 -0.39 0.41 16 42 H 0.35 5.89 8.06 -39.29 -0.32 5.57 16 43 H 0.09 1.40 7.43 -51.93 -0.39 1.01 16 44 H 0.04 0.71 8.06 -51.93 -0.42 0.30 16 45 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -33.62 395.97 -7.61 -41.22 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.42 Total: 11.39 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -0.89 Total: 7.90 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.49 Total: -56.05 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.17 Total: -23.41 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.07 Total: -3.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.62 -7.61 -41.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208436094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.698 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds