Wall clock time and date at job start Wed Apr 1 2020 04:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39903 * 109.47311 * 2 1 4 4 F 1.39891 * 109.47326 * 239.99403 * 2 1 3 5 5 C 1.53002 * 109.46827 * 119.99325 * 2 1 3 6 6 C 1.53003 * 109.47178 * 180.02562 * 5 2 1 7 7 C 1.50701 * 109.47105 * 180.02562 * 6 5 2 8 8 O 1.21284 * 120.00087 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99728 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.63425 * 0.02562 * 9 7 6 11 11 C 1.53192 * 108.77318 * 126.36858 * 10 9 7 12 12 C 1.53041 * 109.31320 * 54.63839 * 11 10 9 13 13 C 1.53033 * 109.53898 * 298.63305 * 12 11 10 14 14 H 1.09000 * 109.49457 * 301.41562 * 13 12 11 15 15 N 1.46894 * 109.49793 * 181.31580 * 13 12 11 16 16 C 1.46899 * 111.00242 * 85.16403 * 15 13 12 17 17 C 1.50694 * 109.47614 * 180.02562 * 16 15 13 18 18 O 1.21298 * 119.99764 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00355 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00274 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99836 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00058 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99882 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99970 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47306 * 59.99992 * 24 22 20 26 26 H 1.48500 * 109.47270 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46816 * 299.99772 * 24 22 20 28 28 C 1.46926 * 120.62994 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47820 * 300.00576 * 1 2 3 30 30 H 1.09003 * 109.46786 * 60.00308 * 1 2 3 31 31 H 1.08995 * 109.47265 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46800 * 60.00344 * 5 2 1 33 33 H 1.08996 * 109.47655 * 300.00371 * 5 2 1 34 34 H 1.08999 * 109.46842 * 60.00331 * 6 5 2 35 35 H 1.08999 * 109.46746 * 300.00361 * 6 5 2 36 36 H 1.08997 * 109.58859 * 246.15938 * 10 9 7 37 37 H 1.09001 * 109.58530 * 6.44176 * 10 9 7 38 38 H 1.09005 * 109.49451 * 174.58740 * 11 10 9 39 39 H 1.08994 * 109.50120 * 294.65354 * 11 10 9 40 40 H 1.08999 * 109.45610 * 58.65103 * 12 11 10 41 41 H 1.09004 * 109.46035 * 178.62071 * 12 11 10 42 42 H 1.00907 * 110.99892 * 209.11322 * 15 13 12 43 43 H 1.08999 * 109.46777 * 299.99800 * 16 15 13 44 44 H 1.09000 * 109.47541 * 59.99631 * 16 15 13 45 45 H 0.97003 * 119.99949 * 359.97438 * 19 17 16 46 46 H 0.97002 * 119.99548 * 179.97438 * 23 22 20 47 47 H 1.09006 * 109.58406 * 353.41879 * 28 9 7 48 48 H 1.09002 * 109.59019 * 113.83868 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1421 5 6 2.0399 -0.7211 1.2494 6 6 3.5699 -0.7206 1.2498 7 6 4.0722 -1.4314 2.4800 8 8 3.2840 -1.8934 3.2777 9 7 5.3972 -1.5538 2.6938 10 6 6.3643 -0.9989 1.7369 11 6 7.3352 -0.0850 2.4911 12 6 7.9696 -0.8635 3.6459 13 6 6.8783 -1.3163 4.6185 14 1 6.3409 -0.4452 4.9934 15 7 7.4913 -2.0362 5.7427 16 6 7.9389 -1.1024 6.7846 17 6 8.5614 -1.8755 7.9185 18 8 8.6255 -3.0856 7.8642 19 7 9.0470 -1.2226 8.9928 20 6 9.6129 -1.9260 10.0246 21 1 9.6700 -3.0034 9.9763 22 6 10.1140 -1.2527 11.1320 23 7 10.0449 0.0583 11.1906 24 14 10.8856 -2.2111 12.5375 25 1 12.0485 -2.9831 12.0305 26 1 11.3386 -1.2671 13.5905 27 1 9.8826 -3.1452 13.1091 28 6 5.9021 -2.2445 3.8882 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6766 -1.7489 1.2494 33 1 1.6766 -0.2073 2.1393 34 1 3.9329 0.3072 1.2500 35 1 3.9336 -1.2342 0.3598 36 1 6.9182 -1.8104 1.2650 37 1 5.8365 -0.4254 0.9750 38 1 8.1154 0.2572 1.8111 39 1 6.7937 0.7747 2.8856 40 1 8.4903 -1.7365 3.2525 41 1 8.6793 -0.2227 4.1693 42 1 6.8566 -2.7232 6.1213 43 1 8.6752 -0.4165 6.3657 44 1 7.0849 -0.5361 7.1563 45 1 8.9961 -0.2548 9.0361 46 1 10.3944 0.5282 11.9638 47 1 5.0695 -2.4908 4.5472 48 1 6.4184 -3.1575 3.5915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208436094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:51 Heat of formation + Delta-G solvation = -208.363063 kcal Electronic energy + Delta-G solvation = -30419.548242 eV Core-core repulsion = 25757.436632 eV Total energy + Delta-G solvation = -4662.111610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.94924 -47.92886 -41.39390 -40.20794 -38.88323 -36.42001 -35.79160 -35.18719 -33.35865 -33.21815 -32.00739 -30.89352 -27.99970 -27.09067 -26.05443 -24.96916 -23.56518 -22.52370 -21.41671 -21.15645 -20.02933 -19.82507 -18.62008 -18.57978 -17.93669 -17.38288 -17.02117 -16.93998 -16.75832 -16.62808 -16.43426 -16.01891 -15.54205 -15.47150 -15.17488 -15.02760 -14.88438 -14.48355 -14.38482 -14.27487 -14.17927 -13.89118 -13.73136 -13.57314 -13.42334 -13.35177 -13.31969 -13.08838 -12.89982 -12.84282 -12.44759 -12.40897 -12.26139 -12.13257 -11.90030 -11.84632 -11.75428 -11.66040 -11.51635 -10.93986 -10.37855 -10.03818 -9.76612 -9.42484 -8.48008 -5.97165 1.39134 1.41110 1.50696 1.52337 1.80854 2.02322 2.28507 2.79616 2.90168 3.17571 3.18791 3.30870 3.43580 3.48602 3.60522 3.76761 3.91188 4.00543 4.06748 4.09563 4.12334 4.24149 4.27891 4.40325 4.44298 4.51987 4.54652 4.61371 4.63967 4.66139 4.76831 4.80031 4.94237 4.94497 4.97523 5.04241 5.07295 5.19479 5.33457 5.39552 5.44263 5.85378 6.05461 6.28821 6.32732 6.57725 7.05034 7.10398 7.53348 8.08497 8.69103 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.001663 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.439591 B =16837.133692 C =17066.097344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.285 3.715 3 F -0.210 7.210 4 F -0.209 7.209 5 C -0.143 4.143 6 C -0.138 4.138 7 C 0.513 3.487 8 O -0.585 6.585 9 N -0.606 5.606 10 C 0.100 3.900 11 C -0.128 4.128 12 C -0.109 4.109 13 C 0.080 3.920 14 H 0.042 0.958 15 N -0.671 5.671 16 C 0.068 3.932 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.116 3.884 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.343 0.657 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.071 0.929 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.336 5.567 -26.980 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.249 3.751 3 F -0.192 7.192 4 F -0.191 7.191 5 C -0.182 4.182 6 C -0.178 4.178 7 C 0.303 3.697 8 O -0.465 6.465 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.166 4.166 12 C -0.147 4.147 13 C -0.030 4.030 14 H 0.060 0.940 15 N -0.304 5.304 16 C -0.064 4.064 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.008 4.008 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.162 0.838 43 H 0.123 0.877 44 H 0.079 0.921 45 H 0.230 0.770 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.994 4.646 -26.786 31.046 hybrid contribution -0.182 0.321 1.485 1.530 sum -15.175 4.967 -25.300 29.918 Atomic orbital electron populations 1.22802 0.89570 1.06621 1.06176 1.21347 0.95264 0.75014 0.83479 1.92999 1.90809 1.38468 1.96883 1.92994 1.90803 1.81078 1.54198 1.22380 0.95511 1.03629 0.96660 1.21693 0.96307 1.03346 0.96444 1.21075 0.81630 0.79116 0.87840 1.90701 1.55815 1.50989 1.49010 1.48166 1.05933 1.56308 1.23485 1.22123 0.90815 0.98198 0.91010 1.21918 0.99366 0.97900 0.97431 1.21559 0.96896 1.00533 0.95725 1.21888 0.94554 0.95149 0.91391 0.93986 1.60150 1.45233 1.15726 1.09297 1.21545 1.00070 0.94285 0.90517 1.20802 0.83548 0.88377 0.84777 1.90493 1.62942 1.16045 1.81384 1.41919 1.52870 1.09607 1.16495 1.19650 1.36658 0.92873 0.97409 0.90262 1.26061 0.97629 0.96728 1.00832 1.69669 1.46658 1.07588 1.32116 0.84971 0.78475 0.77745 0.77032 1.19638 1.19406 1.19759 1.21538 0.96767 0.95105 0.87395 0.88186 0.89489 0.88057 0.88031 0.88269 0.86505 0.86299 0.89582 0.86938 0.87761 0.91544 0.91219 0.92014 0.83756 0.87653 0.92141 0.76983 0.91246 0.91089 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 9.38 71.98 0.68 -0.67 16 2 C 0.28 3.26 2.11 30.59 0.06 3.33 16 3 F -0.21 -3.05 16.54 44.97 0.74 -2.31 16 4 F -0.21 -2.95 16.54 44.97 0.74 -2.21 16 5 C -0.14 -1.78 4.09 30.60 0.13 -1.65 16 6 C -0.14 -1.72 3.80 29.85 0.11 -1.60 16 7 C 0.51 10.36 7.70 87.66 0.67 11.04 16 8 O -0.58 -16.77 15.39 -3.04 -0.05 -16.82 16 9 N -0.61 -11.09 2.97 -818.83 -2.43 -13.52 16 10 C 0.10 1.10 6.34 86.36 0.55 1.64 16 11 C -0.13 -1.56 6.08 30.67 0.19 -1.38 16 12 C -0.11 -2.13 5.40 30.62 0.17 -1.96 16 13 C 0.08 1.95 2.64 45.00 0.12 2.06 16 14 H 0.04 1.06 7.80 -2.39 -0.02 1.04 16 15 N -0.67 -21.57 5.93 -495.15 -2.94 -24.50 16 16 C 0.07 2.40 5.97 85.56 0.51 2.91 16 17 C 0.44 21.19 7.82 87.66 0.69 21.87 16 18 O -0.62 -35.00 15.78 -3.09 -0.05 -35.05 16 19 N -0.57 -29.77 5.29 -306.99 -1.62 -31.39 16 20 C -0.34 -19.34 9.68 84.04 0.81 -18.52 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 24 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 C 0.12 2.68 5.70 86.37 0.49 3.17 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 1.30 8.10 -2.38 -0.02 1.28 16 33 H 0.10 1.32 8.10 -2.39 -0.02 1.30 16 34 H 0.12 1.13 7.35 -2.39 -0.02 1.12 16 35 H 0.12 1.09 7.60 -2.39 -0.02 1.07 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.11 0.67 5.93 -2.39 -0.01 0.65 16 38 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.31 7.44 -2.38 -0.02 1.29 16 42 H 0.34 11.86 8.06 -89.69 -0.72 11.14 16 43 H 0.11 3.32 7.43 -2.39 -0.02 3.30 16 44 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 45 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 46 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 47 H 0.07 1.96 7.00 -2.38 -0.02 1.94 16 48 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.04 395.97 1.89 -72.15 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.46 Total: 38.01 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 5.64 Total: 20.03 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -6.71 Total: -119.05 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.10 Total: -51.87 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 1.49 Total: -4.52 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -74.04 1.89 -72.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208436094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.212 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds