Wall clock time and date at job start Wed Apr 1 2020 04:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31920 * 119.04264 * 2 1 4 4 C 1.32171 * 121.03306 * 179.68525 * 3 2 1 5 5 C 1.38798 * 119.14895 * 0.56560 * 4 3 2 6 6 C 1.39503 * 118.26252 * 359.45084 * 5 4 3 7 7 C 1.48455 * 120.54808 * 180.29522 * 6 5 4 8 8 O 1.21470 * 120.00094 * 8.93587 * 7 6 5 9 9 N 1.34776 * 119.99624 * 188.93293 * 7 6 5 10 10 C 1.46934 * 120.63247 * 7.19888 * 9 7 6 11 11 C 1.53623 * 108.54437 * 126.36337 * 10 9 7 12 12 C 1.53045 * 109.23775 * 54.85888 * 11 10 9 13 13 C 1.53039 * 109.53774 * 298.50767 * 12 11 10 14 14 H 1.08997 * 109.49942 * 301.41493 * 13 12 11 15 15 N 1.46902 * 109.49771 * 181.32001 * 13 12 11 16 16 C 1.46898 * 111.00336 * 155.16265 * 15 13 12 17 17 C 1.50690 * 109.47380 * 179.97438 * 16 15 13 18 18 O 1.21302 * 119.99991 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00186 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99921 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00408 * 0.02562 * 20 19 17 22 22 C 1.38957 * 119.99877 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99788 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99959 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46939 * 60.00535 * 24 22 20 26 26 H 1.48504 * 109.47132 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47198 * 300.00087 * 24 22 20 28 28 C 1.46926 * 120.63368 * 187.47342 * 9 7 6 29 29 N 1.31550 * 119.04558 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46550 * 270.02566 * 1 2 3 31 31 H 1.09000 * 109.46898 * 30.02096 * 1 2 3 32 32 H 1.08995 * 109.47082 * 150.02467 * 1 2 3 33 33 H 1.08001 * 120.42672 * 180.29142 * 4 3 2 34 34 H 1.08001 * 120.87191 * 179.72023 * 5 4 3 35 35 H 1.08996 * 109.58323 * 246.19967 * 10 9 7 36 36 H 1.09006 * 109.57957 * 6.62311 * 10 9 7 37 37 H 1.08994 * 109.63417 * 294.86945 * 11 10 9 38 38 H 1.09001 * 109.45901 * 174.74180 * 11 10 9 39 39 H 1.09003 * 109.45348 * 178.48958 * 12 11 10 40 40 H 1.09000 * 109.45062 * 58.52676 * 12 11 10 41 41 H 1.00903 * 110.99766 * 31.20678 * 15 13 12 42 42 H 1.08997 * 109.46773 * 300.00296 * 16 15 13 43 43 H 1.09002 * 109.46889 * 59.99935 * 16 15 13 44 44 H 0.96997 * 119.99911 * 359.97438 * 19 17 16 45 45 H 0.97003 * 120.00191 * 179.97438 * 23 22 20 46 46 H 1.09007 * 109.57953 * 353.37824 * 28 9 7 47 47 H 1.09002 * 109.58452 * 113.65222 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1992 0.0062 5 6 4.1861 0.0113 0.0009 6 6 3.4761 -1.1895 0.0008 7 6 4.1925 -2.4897 0.0018 8 8 5.3957 -2.5201 0.1661 9 7 3.5079 -3.6364 -0.1795 10 6 2.0825 -3.6092 -0.5350 11 6 1.8789 -4.4532 -1.8024 12 6 2.4414 -5.8573 -1.5690 13 6 3.9428 -5.7668 -1.2871 14 1 4.4430 -5.2890 -2.1294 15 7 4.4878 -7.1173 -1.0944 16 6 5.9232 -7.1551 -1.4046 17 6 6.4457 -8.5529 -1.1953 18 8 5.6962 -9.4313 -0.8238 19 7 7.7461 -8.8269 -1.4199 20 6 8.2216 -10.0986 -1.2289 21 1 7.5541 -10.8808 -0.8990 22 6 9.5622 -10.3812 -1.4610 23 7 10.3742 -9.4294 -1.8630 24 14 10.2102 -12.1136 -1.2002 25 1 9.4857 -13.0528 -2.0937 26 1 11.6613 -12.1517 -1.5134 27 1 9.9989 -12.5134 0.2143 28 6 4.1712 -4.9377 -0.0194 29 7 2.1457 -1.1501 0.0005 30 1 -0.3632 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 3.9826 2.1489 0.0109 34 1 5.2661 0.0164 0.0012 35 1 1.4940 -4.0250 0.2828 36 1 1.7730 -2.5814 -0.7251 37 1 2.3986 -3.9877 -2.6398 38 1 0.8144 -4.5203 -2.0268 39 1 2.2746 -6.4673 -2.4568 40 1 1.9384 -6.3125 -0.7158 41 1 3.9809 -7.7938 -1.6454 42 1 6.0785 -6.8603 -2.4423 43 1 6.4550 -6.4666 -0.7478 44 1 8.3455 -8.1244 -1.7166 45 1 11.3102 -9.6266 -2.0247 46 1 5.2403 -4.7867 0.1308 47 1 3.7513 -5.4585 0.8411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211113330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:16 Heat of formation + Delta-G solvation = 0.151295 kcal Electronic energy + Delta-G solvation = -29920.044059 eV Core-core repulsion = 25717.663496 eV Total energy + Delta-G solvation = -4202.380563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.87869 -40.10240 -38.43451 -37.67051 -35.34565 -34.30190 -33.77970 -33.72672 -32.45630 -31.20000 -29.90439 -29.01948 -27.05737 -26.13653 -24.83846 -24.17416 -23.49031 -22.26525 -21.11948 -19.79248 -19.15106 -18.46783 -17.84616 -17.52057 -16.52166 -16.38295 -16.07028 -15.79521 -15.44547 -15.20051 -15.03083 -14.83059 -14.42821 -14.39076 -14.02128 -13.96830 -13.78789 -13.57501 -13.25433 -13.03468 -12.92307 -12.76905 -12.69154 -12.21810 -11.90086 -11.69745 -11.49688 -11.41112 -11.35661 -11.13387 -10.99356 -10.84064 -10.64533 -10.52025 -10.42108 -10.18569 -10.02577 -9.47482 -9.30446 -8.89202 -8.42899 -8.08667 -7.93483 -6.38718 -3.79678 0.02371 0.36108 2.37745 2.52088 3.22041 3.22183 3.27622 3.31543 3.32094 3.49354 3.93096 3.93626 4.10024 4.30293 4.30977 4.47569 4.65873 4.75463 4.83517 4.90904 4.95107 4.97570 5.04345 5.18474 5.22882 5.24413 5.29510 5.37991 5.44559 5.49819 5.66513 5.72415 5.75049 5.81866 5.86127 5.97542 6.01057 6.04384 6.15306 6.28497 6.30737 6.38411 7.08834 7.21235 7.41677 7.57583 7.64432 7.77493 8.08702 8.63998 9.20280 9.57155 10.08510 10.78903 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.001950 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.384094 B =14352.994741 C =15373.770736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.311 3.689 3 N -0.507 5.507 4 C 0.158 3.842 5 C -0.177 4.177 6 C 0.142 3.858 7 C 0.565 3.435 8 O -0.522 6.522 9 N -0.584 5.584 10 C 0.069 3.931 11 C -0.132 4.132 12 C -0.124 4.124 13 C 0.077 3.923 14 H 0.046 0.954 15 N -0.661 5.661 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.932 3.068 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.118 3.882 29 N -0.487 5.487 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.179 0.821 34 H 0.163 0.837 35 H 0.069 0.931 36 H 0.145 0.855 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.354 0.646 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.393 0.607 45 H 0.272 0.728 46 H 0.093 0.907 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.360 23.454 0.584 30.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.222 5.222 4 C -0.009 4.009 5 C -0.199 4.199 6 C -0.005 4.005 7 C 0.350 3.650 8 O -0.396 6.396 9 N -0.315 5.315 10 C -0.054 4.054 11 C -0.171 4.171 12 C -0.162 4.162 13 C -0.034 4.034 14 H 0.064 0.936 15 N -0.295 5.295 16 C -0.083 4.083 17 C 0.227 3.773 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.759 3.241 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.004 4.004 29 N -0.205 5.205 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.196 0.804 34 H 0.180 0.820 35 H 0.087 0.913 36 H 0.162 0.838 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.175 0.825 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.867 22.847 1.551 30.317 hybrid contribution 1.837 -0.441 -1.051 2.162 sum -18.029 22.406 0.499 28.764 Atomic orbital electron populations 1.20643 0.85018 1.04584 1.04346 1.23503 0.98545 0.83249 0.90201 1.68235 1.10483 1.30334 1.13134 1.23415 0.89365 0.98763 0.89385 1.22994 1.04113 0.92812 1.00031 1.21726 0.89779 0.94928 0.94074 1.17810 0.86219 0.82765 0.78209 1.90831 1.13004 1.86127 1.49687 1.47971 1.11709 1.05357 1.66508 1.23152 0.79833 1.05855 0.96513 1.22011 1.01391 0.95593 0.98077 1.21747 0.94850 0.97007 1.02556 1.21773 0.94935 0.90465 0.96242 0.93624 1.59945 1.02612 1.04364 1.62592 1.21753 0.89477 0.97654 0.99448 1.19776 0.83406 0.89332 0.84812 1.90520 1.56899 1.47915 1.51496 1.41861 1.07501 1.11519 1.59077 1.19654 0.93545 0.87097 1.42645 0.87962 1.25276 0.95918 0.99648 0.97160 1.69610 1.05626 1.32879 1.46137 0.85907 0.77401 0.81807 0.79026 1.19942 1.20994 1.19879 1.21758 0.99559 0.80953 0.98175 1.68228 1.08600 1.29161 1.14508 0.89185 0.89299 0.89256 0.80399 0.81962 0.91266 0.83846 0.91956 0.90409 0.91544 0.90533 0.82541 0.93809 0.89523 0.77426 0.91820 0.88831 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.31 36.01 0.37 -0.01 16 2 C 0.31 2.41 7.64 -157.30 -1.20 1.21 16 3 N -0.51 -4.06 10.32 -10.74 -0.11 -4.17 16 4 C 0.16 1.04 11.31 -17.20 -0.19 0.85 16 5 C -0.18 -1.46 9.72 -38.90 -0.38 -1.84 16 6 C 0.14 1.46 6.62 -82.64 -0.55 0.91 16 7 C 0.57 7.25 7.67 -12.05 -0.09 7.16 16 8 O -0.52 -8.24 15.89 5.39 0.09 -8.15 16 9 N -0.58 -6.90 2.97 -173.38 -0.51 -7.41 16 10 C 0.07 0.62 5.96 -3.48 -0.02 0.60 16 11 C -0.13 -1.11 6.10 -26.38 -0.16 -1.27 16 12 C -0.12 -1.27 5.17 -26.69 -0.14 -1.41 16 13 C 0.08 1.00 2.64 -67.60 -0.18 0.82 16 14 H 0.05 0.62 7.80 -51.93 -0.41 0.22 16 15 N -0.66 -10.80 5.93 -107.88 -0.64 -11.44 16 16 C 0.05 0.91 5.97 -4.98 -0.03 0.88 16 17 C 0.44 10.66 7.82 -10.99 -0.09 10.58 16 18 O -0.58 -16.05 15.78 5.54 0.09 -15.96 16 19 N -0.56 -14.65 5.29 -10.96 -0.06 -14.70 16 20 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 24 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.12 1.58 5.91 -3.71 -0.02 1.56 16 29 N -0.49 -4.36 6.19 -7.32 -0.05 -4.41 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.16 1.21 7.76 -52.49 -0.41 0.80 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.15 1.23 3.98 -83.05 -0.33 0.90 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.35 5.85 8.04 -39.29 -0.32 5.53 16 42 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 43 H 0.09 1.54 7.56 -51.93 -0.39 1.15 16 44 H 0.39 9.83 7.90 -40.82 -0.32 9.50 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.09 1.44 6.47 -51.92 -0.34 1.11 16 47 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -34.39 388.62 -9.22 -43.61 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -6.66 Total: 12.81 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -2.92 Total: 11.88 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -0.64 Total: -66.42 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.17 Total: -24.12 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.39 -9.22 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211113330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.766 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds