Wall clock time and date at job start Wed Apr 1 2020 04:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31920 * 119.04264 * 2 1 4 4 C 1.32171 * 121.03306 * 179.68525 * 3 2 1 5 5 C 1.38798 * 119.14895 * 0.56560 * 4 3 2 6 6 C 1.39503 * 118.26252 * 359.45084 * 5 4 3 7 7 C 1.48455 * 120.54808 * 180.29522 * 6 5 4 8 8 O 1.21470 * 120.00094 * 8.93587 * 7 6 5 9 9 N 1.34776 * 119.99624 * 188.93293 * 7 6 5 10 10 C 1.46934 * 120.63247 * 7.19888 * 9 7 6 11 11 C 1.53623 * 108.54437 * 126.36337 * 10 9 7 12 12 C 1.53045 * 109.23775 * 54.85888 * 11 10 9 13 13 C 1.53039 * 109.53774 * 298.50767 * 12 11 10 14 14 H 1.08997 * 109.49942 * 301.41493 * 13 12 11 15 15 N 1.46902 * 109.49771 * 181.32001 * 13 12 11 16 16 C 1.46898 * 111.00336 * 155.16265 * 15 13 12 17 17 C 1.50690 * 109.47380 * 179.97438 * 16 15 13 18 18 O 1.21302 * 119.99991 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00186 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99921 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00408 * 0.02562 * 20 19 17 22 22 C 1.38957 * 119.99877 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99788 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99959 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46939 * 60.00535 * 24 22 20 26 26 H 1.48504 * 109.47132 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47198 * 300.00087 * 24 22 20 28 28 C 1.46926 * 120.63368 * 187.47342 * 9 7 6 29 29 N 1.31550 * 119.04558 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46550 * 270.02566 * 1 2 3 31 31 H 1.09000 * 109.46898 * 30.02096 * 1 2 3 32 32 H 1.08995 * 109.47082 * 150.02467 * 1 2 3 33 33 H 1.08001 * 120.42672 * 180.29142 * 4 3 2 34 34 H 1.08001 * 120.87191 * 179.72023 * 5 4 3 35 35 H 1.08996 * 109.58323 * 246.19967 * 10 9 7 36 36 H 1.09006 * 109.57957 * 6.62311 * 10 9 7 37 37 H 1.08994 * 109.63417 * 294.86945 * 11 10 9 38 38 H 1.09001 * 109.45901 * 174.74180 * 11 10 9 39 39 H 1.09003 * 109.45348 * 178.48958 * 12 11 10 40 40 H 1.09000 * 109.45062 * 58.52676 * 12 11 10 41 41 H 1.00903 * 110.99766 * 31.20678 * 15 13 12 42 42 H 1.08997 * 109.46773 * 300.00296 * 16 15 13 43 43 H 1.09002 * 109.46889 * 59.99935 * 16 15 13 44 44 H 0.96997 * 119.99911 * 359.97438 * 19 17 16 45 45 H 0.97003 * 120.00191 * 179.97438 * 23 22 20 46 46 H 1.09007 * 109.57953 * 353.37824 * 28 9 7 47 47 H 1.09002 * 109.58452 * 113.65222 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1992 0.0062 5 6 4.1861 0.0113 0.0009 6 6 3.4761 -1.1895 0.0008 7 6 4.1925 -2.4897 0.0018 8 8 5.3957 -2.5201 0.1661 9 7 3.5079 -3.6364 -0.1795 10 6 2.0825 -3.6092 -0.5350 11 6 1.8789 -4.4532 -1.8024 12 6 2.4414 -5.8573 -1.5690 13 6 3.9428 -5.7668 -1.2871 14 1 4.4430 -5.2890 -2.1294 15 7 4.4878 -7.1173 -1.0944 16 6 5.9232 -7.1551 -1.4046 17 6 6.4457 -8.5529 -1.1953 18 8 5.6962 -9.4313 -0.8238 19 7 7.7461 -8.8269 -1.4199 20 6 8.2216 -10.0986 -1.2289 21 1 7.5541 -10.8808 -0.8990 22 6 9.5622 -10.3812 -1.4610 23 7 10.3742 -9.4294 -1.8630 24 14 10.2102 -12.1136 -1.2002 25 1 9.4857 -13.0528 -2.0937 26 1 11.6613 -12.1517 -1.5134 27 1 9.9989 -12.5134 0.2143 28 6 4.1712 -4.9377 -0.0194 29 7 2.1457 -1.1501 0.0005 30 1 -0.3632 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 3.9826 2.1489 0.0109 34 1 5.2661 0.0164 0.0012 35 1 1.4940 -4.0250 0.2828 36 1 1.7730 -2.5814 -0.7251 37 1 2.3986 -3.9877 -2.6398 38 1 0.8144 -4.5203 -2.0268 39 1 2.2746 -6.4673 -2.4568 40 1 1.9384 -6.3125 -0.7158 41 1 3.9809 -7.7938 -1.6454 42 1 6.0785 -6.8603 -2.4423 43 1 6.4550 -6.4666 -0.7478 44 1 8.3455 -8.1244 -1.7166 45 1 11.3102 -9.6266 -2.0247 46 1 5.2403 -4.7867 0.1308 47 1 3.7513 -5.4585 0.8411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211113330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:15 Heat of formation + Delta-G solvation = -25.018966 kcal Electronic energy + Delta-G solvation = -29921.135524 eV Core-core repulsion = 25717.663496 eV Total energy + Delta-G solvation = -4203.472027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.54986 -41.02094 -40.18245 -38.88687 -36.54234 -35.87002 -34.96962 -34.28592 -33.44428 -33.22670 -31.06983 -29.46806 -28.28851 -27.43694 -25.88612 -25.58554 -24.16016 -23.24426 -22.04489 -21.12630 -20.60247 -19.91757 -19.20662 -18.25680 -17.87790 -17.34877 -17.08361 -16.82867 -16.68493 -16.37782 -16.11461 -15.88478 -15.85374 -15.60753 -15.32924 -15.12329 -14.87031 -14.64088 -14.17402 -14.09605 -13.88490 -13.58289 -13.48646 -13.44784 -13.19821 -13.17750 -12.91677 -12.54146 -12.45260 -12.41365 -12.13431 -12.03419 -11.97004 -11.66107 -11.52458 -11.51246 -11.49861 -10.62226 -10.39451 -10.04860 -9.98567 -9.85783 -9.43314 -8.48234 -5.97803 -0.68517 -0.19135 1.38767 1.40462 1.51185 1.52044 1.62096 2.00793 2.27562 2.56511 2.66073 2.85245 2.99422 3.18203 3.28843 3.43561 3.64305 3.72071 3.87396 3.95217 4.08335 4.15759 4.22782 4.28147 4.35126 4.38629 4.42429 4.48610 4.58506 4.63260 4.76529 4.77901 4.83108 4.90677 4.98605 5.02552 5.05942 5.14488 5.29843 5.37026 5.38756 5.57261 5.67837 5.84577 6.03636 6.19226 6.33645 6.56433 6.74711 6.89903 7.09275 7.52179 8.06639 8.68992 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.001950 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.384094 B =14352.994741 C =15373.770736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.305 3.695 3 N -0.517 5.517 4 C 0.169 3.831 5 C -0.181 4.181 6 C 0.122 3.878 7 C 0.559 3.441 8 O -0.563 6.563 9 N -0.582 5.582 10 C 0.067 3.933 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.083 3.917 14 H 0.042 0.958 15 N -0.670 5.670 16 C 0.065 3.935 17 C 0.439 3.561 18 O -0.619 6.619 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.997 3.003 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.121 3.879 29 N -0.492 5.492 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.216 0.784 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.155 0.845 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.353 0.647 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.067 0.933 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.952 24.856 0.090 32.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.039 3.961 3 N -0.232 5.232 4 C 0.002 3.998 5 C -0.204 4.204 6 C -0.024 4.024 7 C 0.346 3.654 8 O -0.441 6.441 9 N -0.313 5.313 10 C -0.054 4.054 11 C -0.162 4.162 12 C -0.157 4.157 13 C -0.028 4.028 14 H 0.060 0.940 15 N -0.304 5.304 16 C -0.068 4.068 17 C 0.227 3.773 18 O -0.506 6.506 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.002 4.002 29 N -0.210 5.210 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.232 0.768 34 H 0.183 0.817 35 H 0.095 0.905 36 H 0.171 0.829 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.174 0.826 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.499 24.272 1.044 32.441 hybrid contribution 2.270 -0.781 -0.871 2.554 sum -19.228 23.491 0.172 30.358 Atomic orbital electron populations 1.20791 0.82658 1.05707 1.05296 1.24168 0.99937 0.82801 0.89192 1.68356 1.11044 1.30404 1.13376 1.24005 0.89007 0.99489 0.87344 1.23139 1.04421 0.92822 0.99996 1.21446 0.90636 0.94105 0.96200 1.18256 0.85969 0.83842 0.77372 1.90795 1.14795 1.86887 1.51660 1.48082 1.12732 1.04493 1.65983 1.23375 0.78076 1.06802 0.97154 1.21995 1.03001 0.93830 0.97384 1.21737 0.92433 0.98553 1.02946 1.21794 0.96874 0.88367 0.95745 0.93983 1.59913 1.01381 1.06221 1.62882 1.21561 0.90820 0.93618 1.00757 1.20716 0.82526 0.91174 0.82897 1.90485 1.57610 1.49791 1.52692 1.41946 1.08328 1.11030 1.59670 1.19665 0.94198 0.87845 1.44763 0.90058 1.26119 0.95538 1.03686 0.96170 1.69681 1.06033 1.34549 1.45917 0.84939 0.77294 0.76912 0.78883 1.19457 1.19486 1.19695 1.21569 0.98268 0.82012 0.98329 1.68146 1.07819 1.29918 1.15110 0.88157 0.88284 0.88024 0.76756 0.81722 0.90463 0.82924 0.92353 0.87450 0.90733 0.90426 0.82618 0.91821 0.88897 0.77112 0.91257 0.91416 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.31 71.24 0.73 0.21 16 2 C 0.30 4.12 7.64 138.79 1.06 5.18 16 3 N -0.52 -7.14 10.32 -187.88 -1.94 -9.08 16 4 C 0.17 1.88 11.31 84.78 0.96 2.84 16 5 C -0.18 -2.85 9.72 22.71 0.22 -2.63 16 6 C 0.12 2.46 6.62 41.98 0.28 2.74 16 7 C 0.56 14.68 7.67 86.97 0.67 15.35 16 8 O -0.56 -18.69 15.89 -3.62 -0.06 -18.75 16 9 N -0.58 -13.74 2.97 -820.77 -2.43 -16.18 16 10 C 0.07 1.11 5.96 86.51 0.52 1.63 16 11 C -0.12 -1.80 6.10 30.82 0.19 -1.61 16 12 C -0.12 -2.25 5.17 30.62 0.16 -2.09 16 13 C 0.08 2.13 2.64 44.99 0.12 2.24 16 14 H 0.04 1.13 7.80 -2.39 -0.02 1.11 16 15 N -0.67 -21.93 5.93 -495.21 -2.94 -24.87 16 16 C 0.06 2.42 5.97 85.55 0.51 2.93 16 17 C 0.44 21.76 7.82 87.65 0.69 22.44 16 18 O -0.62 -34.96 15.78 -3.10 -0.05 -35.01 16 19 N -0.57 -30.60 5.29 -306.98 -1.62 -32.22 16 20 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 21 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.92 -51.14 13.05 21.67 0.28 -50.86 16 24 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 28 C 0.12 3.32 5.91 86.36 0.51 3.83 16 29 N -0.49 -8.14 6.19 -177.08 -1.10 -9.23 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.22 0.61 8.06 -2.91 -0.02 0.59 16 34 H 0.17 2.44 7.76 -2.91 -0.02 2.42 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.15 2.35 3.98 -63.84 -0.25 2.09 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.35 11.64 8.04 -89.69 -0.72 10.92 16 42 H 0.06 2.13 8.06 -2.39 -0.02 2.11 16 43 H 0.09 3.37 7.56 -2.39 -0.02 3.35 16 44 H 0.40 20.29 7.90 -92.71 -0.73 19.56 16 45 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.07 2.20 6.47 -2.38 -0.02 2.19 16 47 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -76.14 388.62 -0.61 -76.75 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: -0.67 Total: 39.67 kcal Atomic # 6 Polarization: 26.08 SS G_CDS: 7.89 Total: 33.97 kcal Atomic # 7 Polarization: -132.70 SS G_CDS: -9.75 Total: -142.45 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.11 Total: -53.76 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -76.14 -0.61 -76.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211113330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.730 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds