Wall clock time and date at job start Wed Apr 1 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46768 * 2 1 4 4 C 1.50696 * 109.47724 * 119.99972 * 2 1 3 5 5 O 1.21278 * 120.00098 * 119.99890 * 4 2 1 6 6 N 1.34776 * 119.99810 * 300.00785 * 4 2 1 7 7 C 1.46506 * 119.99826 * 179.97438 * 6 4 2 8 8 C 1.53119 * 109.51978 * 204.99618 * 7 6 4 9 9 C 1.53039 * 109.27478 * 182.37658 * 8 7 6 10 10 N 1.46852 * 109.52336 * 59.18093 * 9 8 7 11 11 C 1.46900 * 111.00118 * 174.15791 * 10 9 8 12 12 C 1.50697 * 109.47237 * 293.61170 * 11 10 9 13 13 O 1.21294 * 119.99957 * 353.73088 * 12 11 10 14 14 N 1.34777 * 120.00218 * 173.72893 * 12 11 10 15 15 C 1.37099 * 120.00043 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99929 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99738 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47241 * 90.00085 * 19 17 15 21 21 H 1.48497 * 109.47231 * 210.00154 * 19 17 15 22 22 H 1.48508 * 109.47072 * 330.00134 * 19 17 15 23 23 C 1.46845 * 111.19897 * 298.25829 * 10 9 8 24 24 C 1.53038 * 109.52423 * 61.74130 * 23 10 9 25 25 C 1.53006 * 109.47371 * 240.00490 * 2 1 3 26 26 F 1.39895 * 109.47123 * 59.99523 * 25 2 1 27 27 F 1.39898 * 109.46986 * 179.97438 * 25 2 1 28 28 H 1.08997 * 109.46964 * 299.99440 * 1 2 3 29 29 H 1.09002 * 109.47455 * 60.00106 * 1 2 3 30 30 H 1.09000 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46853 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47312 * 299.99998 * 3 2 1 33 33 H 1.08997 * 109.46920 * 60.00533 * 3 2 1 34 34 H 0.97000 * 120.00090 * 359.97438 * 6 4 2 35 35 H 1.08994 * 109.52080 * 325.12579 * 7 6 4 36 36 H 1.08998 * 109.50519 * 62.44346 * 8 7 6 37 37 H 1.08998 * 109.50523 * 302.31571 * 8 7 6 38 38 H 1.08994 * 109.46299 * 299.16822 * 9 8 7 39 39 H 1.09003 * 109.45395 * 179.18930 * 9 8 7 40 40 H 1.08996 * 109.46919 * 173.61386 * 11 10 9 41 41 H 1.08994 * 109.47139 * 53.61230 * 11 10 9 42 42 H 0.97002 * 119.99804 * 0.02562 * 14 12 11 43 43 H 0.96995 * 120.00108 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.46555 * 181.75400 * 23 10 9 45 45 H 1.09004 * 109.46392 * 301.72721 * 23 10 9 46 46 H 1.08998 * 109.50374 * 180.88473 * 24 23 10 47 47 H 1.09001 * 109.50604 * 60.76106 * 24 23 10 48 48 H 1.09000 * 109.46834 * 299.99858 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1948 -0.9409 3.6507 8 6 1.2508 -0.6621 4.8235 9 6 1.7973 -1.3373 6.0835 10 7 3.1386 -0.8163 6.3769 11 6 3.6382 -1.3390 7.6557 12 6 2.7969 -0.7978 8.7827 13 8 1.9459 0.0367 8.5576 14 7 2.9900 -1.2410 10.0408 15 6 2.2249 -0.7483 11.0662 16 1 1.4672 -0.0052 10.8658 17 6 2.4244 -1.2049 12.3633 18 7 3.3467 -2.1087 12.6072 19 14 1.3815 -0.5341 13.7603 20 1 0.1659 -1.3724 13.9173 21 1 2.1666 -0.5597 15.0205 22 1 0.9830 0.8633 13.4537 23 6 4.0744 -1.1138 5.2851 24 6 3.5958 -0.4320 4.0013 25 6 2.0401 -0.7212 -1.2493 26 9 1.5737 -0.0617 -2.3915 27 9 3.4390 -0.7206 -1.2495 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.1493 0.5388 2.5435 35 1 2.2337 -2.0136 3.4613 36 1 0.2617 -1.0604 4.5972 37 1 1.1819 0.4133 4.9876 38 1 1.8529 -2.4140 5.9235 39 1 1.1348 -1.1286 6.9236 40 1 4.6741 -1.0297 7.7947 41 1 3.5816 -2.4274 7.6503 42 1 3.6708 -1.9082 10.2208 43 1 3.4862 -2.4271 13.5127 44 1 5.0658 -0.7431 5.5453 45 1 4.1193 -2.1917 5.1288 46 1 4.2821 -0.6659 3.1874 47 1 3.5638 0.6470 4.1524 48 1 1.6768 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229125197.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:04 Heat of formation + Delta-G solvation = -182.095776 kcal Electronic energy + Delta-G solvation = -31223.278446 eV Core-core repulsion = 26562.305871 eV Total energy + Delta-G solvation = -4660.972575 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.30259 -47.24053 -40.61829 -39.08439 -37.64651 -35.73064 -35.11025 -33.85682 -31.63428 -31.12331 -30.78005 -28.03850 -27.23981 -26.74395 -24.80981 -23.62939 -23.13543 -22.08161 -20.35676 -19.67752 -19.17766 -18.24431 -17.86509 -17.58015 -17.27667 -16.46225 -16.14439 -15.90080 -15.37716 -15.21780 -14.98445 -14.66639 -14.49190 -14.10144 -13.91431 -13.88785 -13.76200 -13.60119 -13.50874 -13.40590 -13.08446 -13.04326 -12.78141 -12.72977 -12.57176 -12.31563 -11.93469 -11.82206 -11.63682 -11.47456 -11.29661 -11.14634 -11.10865 -11.05484 -10.83886 -10.47961 -10.40100 -10.22890 -10.03410 -9.48713 -9.28116 -8.45278 -7.98319 -7.87235 -6.42476 -3.83303 2.21927 2.63302 3.16569 3.25417 3.27701 3.31037 3.80268 3.90266 3.95059 3.97751 3.98277 4.22915 4.37605 4.63083 4.70869 4.74465 4.79074 4.98059 5.04038 5.08060 5.10572 5.14267 5.20031 5.24100 5.27857 5.42551 5.43965 5.51411 5.59470 5.61731 5.66758 5.78327 5.84103 5.96132 5.98421 6.08054 6.15990 6.28219 6.33714 6.37572 7.12569 7.26627 7.38936 7.54197 7.82529 8.05664 8.61188 9.17357 9.54114 10.05798 10.75261 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.001805 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.767591 B =15509.498960 C =15949.205096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C -0.146 4.146 4 C 0.528 3.472 5 O -0.530 6.530 6 N -0.715 5.715 7 C 0.143 3.857 8 C -0.118 4.118 9 C 0.059 3.941 10 N -0.515 5.515 11 C 0.046 3.954 12 C 0.443 3.557 13 O -0.578 6.578 14 N -0.565 5.565 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.058 3.942 24 C -0.122 4.122 25 C 0.287 3.713 26 F -0.202 7.202 27 F -0.192 7.192 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.401 0.599 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.077 0.923 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 2.406 -25.434 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.203 4.203 4 C 0.312 3.688 5 O -0.406 6.406 6 N -0.365 5.365 7 C 0.039 3.961 8 C -0.156 4.156 9 C -0.069 4.069 10 N -0.240 5.240 11 C -0.085 4.085 12 C 0.229 3.771 13 O -0.462 6.462 14 N -0.202 5.202 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.071 4.071 24 C -0.161 4.161 25 C 0.232 3.768 26 F -0.183 7.183 27 F -0.173 7.173 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.236 0.764 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.402 2.686 -25.453 25.819 hybrid contribution -0.064 -0.588 0.815 1.007 sum -3.466 2.098 -24.638 24.969 Atomic orbital electron populations 1.21870 0.90059 1.03780 1.04401 1.21907 0.99693 0.98930 0.93508 1.21874 1.02654 0.91752 1.04047 1.19908 0.80213 0.84304 0.84329 1.90769 1.37233 1.26047 1.86572 1.46026 1.53254 1.32007 1.05254 1.21179 0.94137 0.97399 0.83342 1.21829 0.97706 1.02903 0.93203 1.22108 0.91402 0.95172 0.98218 1.61520 1.01907 1.59754 1.00820 1.21845 0.99621 0.97430 0.89617 1.19751 0.87421 0.86330 0.83629 1.90495 1.36894 1.35386 1.83379 1.41890 1.34380 1.38301 1.05612 1.19684 1.15595 1.21787 0.85713 0.87930 1.25266 0.97406 0.96636 0.98713 1.69611 1.32687 1.29896 1.22110 0.85862 0.79229 0.79381 0.79831 1.20457 1.20948 1.19428 1.22051 0.96459 0.97860 0.90717 1.21931 0.95887 1.01544 0.96771 1.21453 0.76228 0.97155 0.81936 1.92969 1.88390 1.83869 1.53109 1.93009 1.30189 1.97536 1.96571 0.90480 0.90196 0.91230 0.91029 0.90398 0.90718 0.76410 0.89617 0.91196 0.90163 0.95634 0.87903 0.89227 0.93522 0.77501 0.91884 0.90423 0.94985 0.91243 0.90706 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.25 37.16 0.31 -0.37 16 2 C -0.14 -0.97 0.58 -155.66 -0.09 -1.06 16 3 C -0.15 -0.90 8.13 37.16 0.30 -0.60 16 4 C 0.53 5.19 6.33 -10.99 -0.07 5.12 16 5 O -0.53 -7.25 15.07 5.56 0.08 -7.16 16 6 N -0.72 -6.16 4.87 -53.68 -0.26 -6.42 16 7 C 0.14 1.56 2.52 -67.80 -0.17 1.39 16 8 C -0.12 -1.37 5.57 -26.65 -0.15 -1.52 16 9 C 0.06 0.90 5.12 -3.83 -0.02 0.88 16 10 N -0.52 -8.22 4.35 -236.12 -1.03 -9.24 16 11 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 12 C 0.44 10.19 7.31 -10.99 -0.08 10.11 16 13 O -0.58 -15.03 14.29 5.55 0.08 -14.95 16 14 N -0.57 -14.08 5.29 -10.96 -0.06 -14.13 16 15 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 16 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 19 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 23 C 0.06 0.75 5.46 -3.83 -0.02 0.73 16 24 C -0.12 -1.42 5.68 -26.65 -0.15 -1.57 16 25 C 0.29 2.43 3.79 37.16 0.14 2.57 16 26 F -0.20 -1.71 16.30 2.25 0.04 -1.68 16 27 F -0.19 -2.20 15.90 2.25 0.04 -2.17 16 28 H 0.08 0.27 7.56 -51.93 -0.39 -0.12 16 29 H 0.08 0.32 7.80 -51.93 -0.41 -0.08 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.54 7.80 -51.93 -0.41 0.14 16 32 H 0.08 0.42 7.80 -51.93 -0.41 0.02 16 33 H 0.07 0.35 7.56 -51.93 -0.39 -0.05 16 34 H 0.40 2.50 7.44 -40.82 -0.30 2.20 16 35 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 1.90 6.06 -51.93 -0.31 1.59 16 40 H 0.09 1.43 7.98 -51.93 -0.41 1.01 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.12 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -32.65 391.51 -7.26 -39.90 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.48 Total: 9.18 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.27 Total: 8.59 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.62 Total: -53.41 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.16 Total: -22.11 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.07 Total: -3.84 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.65 -7.26 -39.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229125197.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.192 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds