Wall clock time and date at job start Wed Apr 1 2020 04:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46768 * 2 1 4 4 C 1.50696 * 109.47724 * 119.99972 * 2 1 3 5 5 O 1.21278 * 120.00098 * 119.99890 * 4 2 1 6 6 N 1.34776 * 119.99810 * 300.00785 * 4 2 1 7 7 C 1.46506 * 119.99826 * 179.97438 * 6 4 2 8 8 C 1.53119 * 109.51978 * 204.99618 * 7 6 4 9 9 C 1.53039 * 109.27478 * 182.37658 * 8 7 6 10 10 N 1.46852 * 109.52336 * 59.18093 * 9 8 7 11 11 C 1.46900 * 111.00118 * 174.15791 * 10 9 8 12 12 C 1.50697 * 109.47237 * 293.61170 * 11 10 9 13 13 O 1.21294 * 119.99957 * 353.73088 * 12 11 10 14 14 N 1.34777 * 120.00218 * 173.72893 * 12 11 10 15 15 C 1.37099 * 120.00043 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99929 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99738 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47241 * 90.00085 * 19 17 15 21 21 H 1.48497 * 109.47231 * 210.00154 * 19 17 15 22 22 H 1.48508 * 109.47072 * 330.00134 * 19 17 15 23 23 C 1.46845 * 111.19897 * 298.25829 * 10 9 8 24 24 C 1.53038 * 109.52423 * 61.74130 * 23 10 9 25 25 C 1.53006 * 109.47371 * 240.00490 * 2 1 3 26 26 F 1.39895 * 109.47123 * 59.99523 * 25 2 1 27 27 F 1.39898 * 109.46986 * 179.97438 * 25 2 1 28 28 H 1.08997 * 109.46964 * 299.99440 * 1 2 3 29 29 H 1.09002 * 109.47455 * 60.00106 * 1 2 3 30 30 H 1.09000 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46853 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47312 * 299.99998 * 3 2 1 33 33 H 1.08997 * 109.46920 * 60.00533 * 3 2 1 34 34 H 0.97000 * 120.00090 * 359.97438 * 6 4 2 35 35 H 1.08994 * 109.52080 * 325.12579 * 7 6 4 36 36 H 1.08998 * 109.50519 * 62.44346 * 8 7 6 37 37 H 1.08998 * 109.50523 * 302.31571 * 8 7 6 38 38 H 1.08994 * 109.46299 * 299.16822 * 9 8 7 39 39 H 1.09003 * 109.45395 * 179.18930 * 9 8 7 40 40 H 1.08996 * 109.46919 * 173.61386 * 11 10 9 41 41 H 1.08994 * 109.47139 * 53.61230 * 11 10 9 42 42 H 0.97002 * 119.99804 * 0.02562 * 14 12 11 43 43 H 0.96995 * 120.00108 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.46555 * 181.75400 * 23 10 9 45 45 H 1.09004 * 109.46392 * 301.72721 * 23 10 9 46 46 H 1.08998 * 109.50374 * 180.88473 * 24 23 10 47 47 H 1.09001 * 109.50604 * 60.76106 * 24 23 10 48 48 H 1.09000 * 109.46834 * 299.99858 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1948 -0.9409 3.6507 8 6 1.2508 -0.6621 4.8235 9 6 1.7973 -1.3373 6.0835 10 7 3.1386 -0.8163 6.3769 11 6 3.6382 -1.3390 7.6557 12 6 2.7969 -0.7978 8.7827 13 8 1.9459 0.0367 8.5576 14 7 2.9900 -1.2410 10.0408 15 6 2.2249 -0.7483 11.0662 16 1 1.4672 -0.0052 10.8658 17 6 2.4244 -1.2049 12.3633 18 7 3.3467 -2.1087 12.6072 19 14 1.3815 -0.5341 13.7603 20 1 0.1659 -1.3724 13.9173 21 1 2.1666 -0.5597 15.0205 22 1 0.9830 0.8633 13.4537 23 6 4.0744 -1.1138 5.2851 24 6 3.5958 -0.4320 4.0013 25 6 2.0401 -0.7212 -1.2493 26 9 1.5737 -0.0617 -2.3915 27 9 3.4390 -0.7206 -1.2495 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.1493 0.5388 2.5435 35 1 2.2337 -2.0136 3.4613 36 1 0.2617 -1.0604 4.5972 37 1 1.1819 0.4133 4.9876 38 1 1.8529 -2.4140 5.9235 39 1 1.1348 -1.1286 6.9236 40 1 4.6741 -1.0297 7.7947 41 1 3.5816 -2.4274 7.6503 42 1 3.6708 -1.9082 10.2208 43 1 3.4862 -2.4271 13.5127 44 1 5.0658 -0.7431 5.5453 45 1 4.1193 -2.1917 5.1288 46 1 4.2821 -0.6659 3.1874 47 1 3.5638 0.6470 4.1524 48 1 1.6768 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229125197.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:03 Heat of formation + Delta-G solvation = -205.527402 kcal Electronic energy + Delta-G solvation = -31224.294517 eV Core-core repulsion = 26562.305871 eV Total energy + Delta-G solvation = -4661.988647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.00688 -47.96821 -41.45882 -40.48637 -39.12579 -36.38298 -36.26776 -35.71259 -33.28972 -32.52022 -31.83797 -28.70243 -28.46466 -27.31669 -26.46474 -24.76375 -24.17217 -23.03601 -21.25131 -21.00622 -20.49290 -19.85175 -18.94372 -18.27341 -18.02245 -17.72676 -17.23814 -16.97747 -16.57267 -16.33598 -16.24596 -16.07954 -15.59982 -15.32961 -15.30569 -14.93001 -14.80936 -14.50596 -14.34059 -14.31119 -14.15023 -13.89487 -13.68803 -13.48284 -13.37444 -13.20600 -13.15063 -13.11895 -12.94081 -12.71323 -12.43396 -12.36873 -12.32639 -12.18691 -12.11179 -11.84111 -11.70527 -11.60375 -11.38495 -10.86009 -10.25876 -10.13156 -9.97577 -9.20361 -8.44541 -5.92882 1.38972 1.42676 1.46340 1.55321 1.88883 2.08174 2.29428 2.66949 2.75395 3.16749 3.22523 3.35232 3.40204 3.43256 3.70000 3.83841 3.85873 4.05945 4.08400 4.16289 4.18793 4.30381 4.36270 4.46037 4.51620 4.56330 4.62076 4.62419 4.69184 4.72000 4.73442 4.77124 4.91177 4.97530 5.04262 5.11889 5.13579 5.18516 5.28143 5.42895 5.43559 5.89676 6.09742 6.22258 6.42539 6.62972 7.09860 7.15278 7.59438 8.14814 8.72911 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.001805 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.767591 B =15509.498960 C =15949.205096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.146 4.146 4 C 0.528 3.472 5 O -0.571 6.571 6 N -0.703 5.703 7 C 0.153 3.847 8 C -0.106 4.106 9 C 0.058 3.942 10 N -0.529 5.529 11 C 0.056 3.944 12 C 0.443 3.557 13 O -0.610 6.610 14 N -0.577 5.577 15 C -0.329 4.329 16 H 0.080 0.920 17 C -0.016 4.016 18 N -0.922 5.922 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.273 1.273 22 H -0.272 1.272 23 C 0.059 3.941 24 C -0.116 4.116 25 C 0.278 3.722 26 F -0.202 7.202 27 F -0.212 7.212 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.395 0.605 43 H 0.276 0.724 44 H 0.087 0.913 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 2.904 -26.228 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.203 4.203 4 C 0.314 3.686 5 O -0.450 6.450 6 N -0.354 5.354 7 C 0.048 3.952 8 C -0.144 4.144 9 C -0.070 4.070 10 N -0.255 5.255 11 C -0.075 4.075 12 C 0.231 3.769 13 O -0.496 6.496 14 N -0.214 5.214 15 C -0.458 4.458 16 H 0.098 0.902 17 C -0.215 4.215 18 N -0.563 5.563 19 Si 0.817 3.183 20 H -0.197 1.197 21 H -0.198 1.198 22 H -0.197 1.197 23 C -0.069 4.069 24 C -0.154 4.154 25 C 0.224 3.776 26 F -0.183 7.183 27 F -0.193 7.193 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.253 0.747 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.228 0.772 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.077 3.198 -26.265 26.771 hybrid contribution 0.151 -0.743 0.991 1.248 sum -3.927 2.456 -25.274 25.695 Atomic orbital electron populations 1.21931 0.87814 1.04371 1.05802 1.21866 1.01269 0.98755 0.91232 1.21915 1.01609 0.91258 1.05518 1.20344 0.79386 0.83738 0.85112 1.90754 1.39107 1.27975 1.87148 1.45846 1.53007 1.32161 1.04345 1.20919 0.93610 0.96928 0.83761 1.21702 0.98538 1.02361 0.91815 1.22039 0.90575 0.96013 0.98361 1.61511 1.02786 1.60206 1.00957 1.21726 0.99222 0.98120 0.88408 1.20715 0.86925 0.85145 0.84156 1.90468 1.38373 1.36753 1.84018 1.41966 1.34592 1.38819 1.06054 1.19650 1.16421 1.22548 0.87216 0.90155 1.26045 0.98383 0.96648 1.00459 1.69677 1.33419 1.30350 1.22895 0.84928 0.77901 0.78514 0.77002 1.19684 1.19773 1.19683 1.22109 0.96194 0.98467 0.90101 1.21858 0.96250 1.01371 0.95964 1.21737 0.75181 0.98087 0.82571 1.92965 1.88230 1.83916 1.53170 1.92966 1.32016 1.97654 1.96707 0.88830 0.89085 0.91097 0.92739 0.89385 0.88846 0.74702 0.90794 0.89387 0.90455 0.94945 0.91709 0.87249 0.91846 0.77151 0.91418 0.89478 0.94395 0.91354 0.90670 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.25 71.98 0.59 -0.35 16 2 C -0.13 -1.58 0.58 -52.93 -0.03 -1.61 16 3 C -0.15 -1.50 8.13 71.98 0.58 -0.92 16 4 C 0.53 9.60 6.33 87.66 0.56 10.15 16 5 O -0.57 -15.23 15.07 -3.02 -0.05 -15.28 16 6 N -0.70 -10.67 4.87 -442.15 -2.15 -12.82 16 7 C 0.15 3.07 2.52 45.07 0.11 3.18 16 8 C -0.11 -2.31 5.57 30.65 0.17 -2.14 16 9 C 0.06 1.74 5.12 86.33 0.44 2.18 16 10 N -0.53 -16.39 4.35 -900.94 -3.92 -20.30 16 11 C 0.06 1.93 5.45 85.56 0.47 2.39 16 12 C 0.44 20.65 7.31 87.66 0.64 21.29 16 13 O -0.61 -32.55 14.29 -3.07 -0.04 -32.59 16 14 N -0.58 -29.26 5.29 -306.98 -1.62 -30.89 16 15 C -0.33 -18.43 9.68 84.04 0.81 -17.61 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 18 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 19 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 C 0.06 1.43 5.46 86.33 0.47 1.91 16 24 C -0.12 -2.51 5.68 30.65 0.17 -2.33 16 25 C 0.28 4.45 3.79 71.98 0.27 4.72 16 26 F -0.20 -3.15 16.30 44.97 0.73 -2.41 16 27 F -0.21 -4.84 15.90 44.97 0.72 -4.12 16 28 H 0.09 0.33 7.56 -2.39 -0.02 0.32 16 29 H 0.09 0.46 7.80 -2.39 -0.02 0.44 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.76 7.80 -2.39 -0.02 0.75 16 32 H 0.09 0.75 7.80 -2.39 -0.02 0.73 16 33 H 0.09 0.59 7.56 -2.39 -0.02 0.58 16 34 H 0.42 4.00 7.44 -92.71 -0.69 3.31 16 35 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 2.45 6.06 -2.39 -0.01 2.43 16 40 H 0.11 3.32 7.98 -2.39 -0.02 3.30 16 41 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 42 H 0.39 19.18 7.90 -92.71 -0.73 18.44 16 43 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.09 1.95 8.01 -2.39 -0.02 1.93 16 45 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.12 1.70 8.10 -2.39 -0.02 1.68 16 Total: -1.00 -71.77 391.51 1.28 -70.48 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.43 Total: 32.21 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 5.74 Total: 20.48 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -7.41 Total: -113.40 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -0.09 Total: -47.87 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 1.45 Total: -6.53 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.77 1.28 -70.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229125197.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.044 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds