Wall clock time and date at job start Wed Apr 1 2020 04:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31910 * 119.04534 * 2 1 4 4 C 1.32176 * 121.03706 * 179.97438 * 3 2 1 5 5 C 1.38802 * 119.14533 * 0.02562 * 4 3 2 6 6 C 1.39503 * 118.26499 * 359.97438 * 5 4 3 7 7 C 1.48450 * 120.55228 * 180.02562 * 6 5 4 8 8 O 1.21484 * 119.99745 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00162 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99991 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.46750 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47356 * 294.99759 * 11 10 9 13 13 N 1.46896 * 109.47735 * 55.00286 * 11 10 9 14 14 C 1.46894 * 111.00366 * 222.69924 * 13 11 10 15 15 C 1.50708 * 109.47223 * 186.10999 * 14 13 11 16 16 O 1.21289 * 119.99570 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00050 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00265 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99553 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00275 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00148 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46926 * 89.99855 * 22 20 18 24 24 H 1.48498 * 109.47295 * 209.99909 * 22 20 18 25 25 H 1.48503 * 109.47081 * 330.00464 * 22 20 18 26 26 C 1.53002 * 109.46955 * 175.00580 * 11 10 9 27 27 C 1.53009 * 117.49757 * 251.54192 * 26 11 10 28 28 C 1.53001 * 117.49917 * 182.88205 * 26 11 10 29 29 N 1.31554 * 119.03952 * 180.28405 * 2 1 3 30 30 H 1.09004 * 109.47050 * 89.99136 * 1 2 3 31 31 H 1.08991 * 109.47219 * 209.99430 * 1 2 3 32 32 H 1.09008 * 109.46720 * 329.99510 * 1 2 3 33 33 H 1.08001 * 120.42942 * 180.02562 * 4 3 2 34 34 H 1.07999 * 120.87069 * 179.97438 * 5 4 3 35 35 H 0.97002 * 119.99584 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.46441 * 60.00510 * 10 9 7 37 37 H 1.08997 * 109.47223 * 300.00843 * 10 9 7 38 38 H 1.00902 * 110.99821 * 346.65476 * 13 11 10 39 39 H 1.09003 * 109.47269 * 306.11030 * 14 13 11 40 40 H 1.09001 * 109.47342 * 66.11151 * 14 13 11 41 41 H 0.97004 * 120.00267 * 359.97438 * 17 15 14 42 42 H 0.96992 * 120.00001 * 180.02562 * 21 20 18 43 43 H 1.08998 * 115.55136 * 37.20837 * 26 11 10 44 44 H 1.08997 * 117.49676 * 359.97438 * 27 26 11 45 45 H 1.08996 * 117.49751 * 145.01919 * 27 26 11 46 46 H 1.09003 * 117.49570 * 214.97432 * 28 26 11 47 47 H 1.08993 * 117.50215 * 359.97223 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1532 0.0000 4 6 3.4684 1.1991 0.0005 5 6 4.1861 0.0111 0.0005 6 6 3.4760 -1.1897 0.0005 7 6 4.1923 -2.4900 0.0011 8 8 5.4069 -2.5143 0.0011 9 7 3.4952 -3.6434 0.0016 10 6 4.2021 -4.9266 0.0016 11 6 3.1847 -6.0692 0.0016 12 1 2.6187 -6.0518 0.9330 13 7 2.2658 -5.9068 -1.1329 14 6 0.8796 -6.1798 -0.7308 15 6 -0.0110 -6.1509 -1.9463 16 8 0.4626 -5.9246 -3.0397 17 7 -1.3335 -6.3765 -1.8182 18 6 -2.1436 -6.3507 -2.9239 19 1 -1.7219 -6.1492 -3.8976 20 6 -3.5072 -6.5827 -2.7918 21 7 -4.0203 -6.8274 -1.6070 22 14 -4.6110 -6.5469 -4.2983 23 1 -4.6887 -7.9078 -4.8875 24 1 -5.9712 -6.0995 -3.9049 25 1 -4.0505 -5.6050 -5.3003 26 6 3.9189 -7.4057 -0.1240 27 6 3.7982 -8.1560 -1.4520 28 6 3.0675 -8.6740 -0.2106 29 7 2.1456 -1.1501 -0.0057 30 1 -0.3633 0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5140 33 1 3.9827 2.1488 0.0009 34 1 5.2661 0.0161 0.0005 35 1 2.5254 -3.6239 0.0012 36 1 4.8278 -4.9966 0.8915 37 1 4.8272 -4.9970 -0.8885 38 1 2.3503 -4.9865 -1.5378 39 1 0.8238 -7.1627 -0.2629 40 1 0.5507 -5.4205 -0.0214 41 1 -1.7122 -6.5578 -0.9437 42 1 -4.9721 -6.9897 -1.5149 43 1 4.8684 -7.4722 0.4071 44 1 3.1954 -7.6976 -2.2360 45 1 4.6681 -8.7163 -1.7943 46 1 3.4572 -9.5750 0.2632 47 1 1.9845 -8.5564 -0.1777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265380780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:15 Heat of formation + Delta-G solvation = 12.895688 kcal Electronic energy + Delta-G solvation = -30153.934551 eV Core-core repulsion = 25952.106627 eV Total energy + Delta-G solvation = -4201.827924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57310 -39.88613 -38.74694 -37.68844 -35.37694 -34.30962 -34.02183 -33.53429 -33.25962 -31.23546 -29.81944 -28.77881 -26.54952 -25.73721 -24.04427 -23.68179 -22.82116 -22.03778 -21.03835 -19.84462 -19.30506 -18.65104 -17.95017 -17.83910 -16.33102 -16.20962 -16.06044 -15.77082 -15.71050 -15.45755 -15.09338 -14.76382 -14.51004 -14.35790 -14.20728 -13.81497 -13.68729 -13.54815 -13.33853 -12.87459 -12.59891 -12.50057 -12.39241 -11.93239 -11.71535 -11.52410 -11.30364 -11.23900 -11.17249 -11.10052 -10.98619 -10.73336 -10.40529 -10.23050 -10.08061 -9.86097 -9.84125 -9.64506 -9.51734 -9.37705 -8.49577 -8.11055 -7.97098 -6.42860 -3.83486 0.15754 0.56614 2.43676 2.63919 3.16914 3.25830 3.31405 3.45643 3.46862 3.68012 3.86329 3.90117 4.10129 4.19539 4.30719 4.48447 4.59949 4.64463 4.89803 5.04202 5.06453 5.10686 5.13781 5.23942 5.31115 5.32455 5.37865 5.40500 5.49807 5.60670 5.65950 5.67636 5.75443 5.84518 5.94932 6.01662 6.04243 6.15310 6.24954 6.40490 6.47093 6.75279 7.09391 7.11290 7.52380 7.54215 7.62402 7.79519 8.05013 8.60131 9.17144 9.53140 10.04701 10.74821 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007518 B = 0.003325 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3723.633637 B = 8420.224065 C =11578.336361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.323 3.677 3 N -0.505 5.505 4 C 0.154 3.846 5 C -0.180 4.180 6 C 0.135 3.865 7 C 0.573 3.427 8 O -0.524 6.524 9 N -0.707 5.707 10 C 0.111 3.889 11 C 0.105 3.895 12 H 0.064 0.936 13 N -0.660 5.660 14 C 0.046 3.954 15 C 0.442 3.558 16 O -0.580 6.580 17 N -0.563 5.563 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.928 3.072 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.153 4.153 27 C -0.156 4.156 28 C -0.178 4.178 29 N -0.493 5.493 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.412 0.588 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.350 0.650 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.855 9.711 9.298 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 N -0.220 5.220 4 C -0.014 4.014 5 C -0.203 4.203 6 C -0.013 4.013 7 C 0.357 3.643 8 O -0.399 6.399 9 N -0.360 5.360 10 C -0.012 4.012 11 C -0.005 4.005 12 H 0.082 0.918 13 N -0.294 5.294 14 C -0.086 4.086 15 C 0.227 3.773 16 O -0.464 6.464 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.173 4.173 27 C -0.193 4.193 28 C -0.214 4.214 29 N -0.211 5.211 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.195 0.805 34 H 0.178 0.822 35 H 0.249 0.751 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.171 0.829 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.140 0.860 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.962 9.115 8.356 18.651 hybrid contribution -0.571 0.627 0.411 0.942 sum 13.391 9.743 8.767 18.738 Atomic orbital electron populations 1.20671 0.84787 1.04617 1.04710 1.23344 0.98490 0.82729 0.89839 1.68249 1.10422 1.30436 1.12925 1.23381 0.89466 0.98655 0.89894 1.22942 1.03827 0.92971 1.00528 1.21606 0.90019 0.94650 0.95054 1.17740 0.86478 0.82916 0.77179 1.90802 1.12579 1.86952 1.49579 1.45908 1.11487 1.05446 1.73133 1.21791 0.95205 0.80599 1.03633 1.21244 0.92880 0.92785 0.93607 0.91840 1.60009 1.04211 1.36596 1.28597 1.21894 0.88486 1.01619 0.96624 1.19742 0.82988 0.84690 0.89866 1.90535 1.74383 1.53985 1.27449 1.41850 1.05517 1.62044 1.10608 1.19684 0.88548 1.45339 0.89204 0.87979 1.25239 0.97405 0.97237 0.97977 1.69604 1.13887 1.48420 1.22393 0.85881 0.78853 0.78679 0.81023 1.20415 1.20941 1.19441 1.22164 1.00090 0.91405 1.03606 1.22987 1.02147 1.01829 0.92336 1.22919 0.99126 0.96107 1.03289 1.68215 1.08532 1.31419 1.12907 0.88906 0.89047 0.89331 0.80533 0.82180 0.75124 0.90281 0.89762 0.82850 0.89325 0.93807 0.77540 0.91894 0.87976 0.86002 0.90166 0.89639 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.31 36.01 0.37 -0.46 16 2 C 0.32 3.71 7.64 -157.30 -1.20 2.51 16 3 N -0.51 -5.44 10.32 -10.73 -0.11 -5.55 16 4 C 0.15 1.31 11.31 -17.19 -0.19 1.11 16 5 C -0.18 -1.72 9.72 -38.90 -0.38 -2.10 16 6 C 0.13 1.61 6.79 -82.64 -0.56 1.05 16 7 C 0.57 7.35 7.83 -12.05 -0.09 7.25 16 8 O -0.52 -7.69 16.43 5.38 0.09 -7.60 16 9 N -0.71 -8.27 4.90 -61.06 -0.30 -8.57 16 10 C 0.11 1.22 5.17 -4.04 -0.02 1.20 16 11 C 0.11 1.21 2.66 -67.72 -0.18 1.03 16 12 H 0.06 0.69 7.63 -51.93 -0.40 0.29 16 13 N -0.66 -9.70 3.99 -107.99 -0.43 -10.13 16 14 C 0.05 0.75 5.76 -4.98 -0.03 0.73 16 15 C 0.44 9.97 7.84 -10.98 -0.09 9.89 16 16 O -0.58 -15.24 15.91 5.55 0.09 -15.15 16 17 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 18 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 22 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C -0.15 -1.72 5.69 -90.61 -0.52 -2.23 16 27 C -0.16 -2.03 9.86 -26.69 -0.26 -2.29 16 28 C -0.18 -2.16 10.07 -26.69 -0.27 -2.43 16 29 N -0.49 -6.11 9.60 -7.32 -0.07 -6.18 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.16 1.28 7.74 -52.49 -0.41 0.87 16 35 H 0.41 4.85 7.11 -40.82 -0.29 4.56 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.35 5.49 6.88 -39.29 -0.27 5.22 16 39 H 0.09 1.36 5.96 -51.93 -0.31 1.05 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.10 0.98 8.13 -51.93 -0.42 0.55 16 44 H 0.12 1.98 6.99 -51.93 -0.36 1.61 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.29 5.92 -51.93 -0.31 0.98 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -32.49 399.09 -9.14 -41.63 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -6.40 Total: 19.49 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -3.66 Total: 7.47 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -0.24 Total: -67.62 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.18 Total: -22.75 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.49 -9.14 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265380780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.524 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds