Wall clock time and date at job start Wed Apr 1 2020 04:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31910 * 119.04534 * 2 1 4 4 C 1.32176 * 121.03706 * 179.97438 * 3 2 1 5 5 C 1.38802 * 119.14533 * 0.02562 * 4 3 2 6 6 C 1.39503 * 118.26499 * 359.97438 * 5 4 3 7 7 C 1.48450 * 120.55228 * 180.02562 * 6 5 4 8 8 O 1.21484 * 119.99745 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00162 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99991 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.46750 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47356 * 294.99759 * 11 10 9 13 13 N 1.46896 * 109.47735 * 55.00286 * 11 10 9 14 14 C 1.46894 * 111.00366 * 222.69924 * 13 11 10 15 15 C 1.50708 * 109.47223 * 186.10999 * 14 13 11 16 16 O 1.21289 * 119.99570 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00050 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00265 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99553 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00275 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00148 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46926 * 89.99855 * 22 20 18 24 24 H 1.48498 * 109.47295 * 209.99909 * 22 20 18 25 25 H 1.48503 * 109.47081 * 330.00464 * 22 20 18 26 26 C 1.53002 * 109.46955 * 175.00580 * 11 10 9 27 27 C 1.53009 * 117.49757 * 251.54192 * 26 11 10 28 28 C 1.53001 * 117.49917 * 182.88205 * 26 11 10 29 29 N 1.31554 * 119.03952 * 180.28405 * 2 1 3 30 30 H 1.09004 * 109.47050 * 89.99136 * 1 2 3 31 31 H 1.08991 * 109.47219 * 209.99430 * 1 2 3 32 32 H 1.09008 * 109.46720 * 329.99510 * 1 2 3 33 33 H 1.08001 * 120.42942 * 180.02562 * 4 3 2 34 34 H 1.07999 * 120.87069 * 179.97438 * 5 4 3 35 35 H 0.97002 * 119.99584 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.46441 * 60.00510 * 10 9 7 37 37 H 1.08997 * 109.47223 * 300.00843 * 10 9 7 38 38 H 1.00902 * 110.99821 * 346.65476 * 13 11 10 39 39 H 1.09003 * 109.47269 * 306.11030 * 14 13 11 40 40 H 1.09001 * 109.47342 * 66.11151 * 14 13 11 41 41 H 0.97004 * 120.00267 * 359.97438 * 17 15 14 42 42 H 0.96992 * 120.00001 * 180.02562 * 21 20 18 43 43 H 1.08998 * 115.55136 * 37.20837 * 26 11 10 44 44 H 1.08997 * 117.49676 * 359.97438 * 27 26 11 45 45 H 1.08996 * 117.49751 * 145.01919 * 27 26 11 46 46 H 1.09003 * 117.49570 * 214.97432 * 28 26 11 47 47 H 1.08993 * 117.50215 * 359.97223 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1532 0.0000 4 6 3.4684 1.1991 0.0005 5 6 4.1861 0.0111 0.0005 6 6 3.4760 -1.1897 0.0005 7 6 4.1923 -2.4900 0.0011 8 8 5.4069 -2.5143 0.0011 9 7 3.4952 -3.6434 0.0016 10 6 4.2021 -4.9266 0.0016 11 6 3.1847 -6.0692 0.0016 12 1 2.6187 -6.0518 0.9330 13 7 2.2658 -5.9068 -1.1329 14 6 0.8796 -6.1798 -0.7308 15 6 -0.0110 -6.1509 -1.9463 16 8 0.4626 -5.9246 -3.0397 17 7 -1.3335 -6.3765 -1.8182 18 6 -2.1436 -6.3507 -2.9239 19 1 -1.7219 -6.1492 -3.8976 20 6 -3.5072 -6.5827 -2.7918 21 7 -4.0203 -6.8274 -1.6070 22 14 -4.6110 -6.5469 -4.2983 23 1 -4.6887 -7.9078 -4.8875 24 1 -5.9712 -6.0995 -3.9049 25 1 -4.0505 -5.6050 -5.3003 26 6 3.9189 -7.4057 -0.1240 27 6 3.7982 -8.1560 -1.4520 28 6 3.0675 -8.6740 -0.2106 29 7 2.1456 -1.1501 -0.0057 30 1 -0.3633 0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5140 33 1 3.9827 2.1488 0.0009 34 1 5.2661 0.0161 0.0005 35 1 2.5254 -3.6239 0.0012 36 1 4.8278 -4.9966 0.8915 37 1 4.8272 -4.9970 -0.8885 38 1 2.3503 -4.9865 -1.5378 39 1 0.8238 -7.1627 -0.2629 40 1 0.5507 -5.4205 -0.0214 41 1 -1.7122 -6.5578 -0.9437 42 1 -4.9721 -6.9897 -1.5149 43 1 4.8684 -7.4722 0.4071 44 1 3.1954 -7.6976 -2.2360 45 1 4.6681 -8.7163 -1.7943 46 1 3.4572 -9.5750 0.2632 47 1 1.9845 -8.5564 -0.1777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265380780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:14 Heat of formation + Delta-G solvation = -10.644958 kcal Electronic energy + Delta-G solvation = -30154.955350 eV Core-core repulsion = 25952.106627 eV Total energy + Delta-G solvation = -4202.848723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.38840 -40.89259 -40.17267 -39.10933 -36.37479 -35.96591 -35.13062 -34.48236 -34.30293 -33.22223 -30.93259 -29.53191 -27.97583 -26.85688 -25.58740 -24.62734 -23.68237 -23.03389 -21.97969 -21.10686 -20.77156 -19.91609 -19.57225 -18.71236 -17.65333 -17.29868 -17.08977 -16.98292 -16.63399 -16.48782 -16.31983 -16.00881 -15.83593 -15.74364 -15.31843 -15.25321 -14.80033 -14.59243 -14.40059 -14.08893 -13.72334 -13.53099 -13.44196 -13.29337 -13.12749 -12.88640 -12.80262 -12.39991 -12.33908 -12.12086 -12.09536 -12.07965 -12.01360 -11.72404 -11.48719 -11.04359 -10.80219 -10.64669 -10.47918 -10.31940 -10.29851 -9.98598 -9.34753 -8.44785 -5.92793 -0.68402 -0.17923 1.38291 1.42378 1.51037 1.54430 1.74039 2.08191 2.29475 2.63139 2.64747 2.78293 2.96460 3.10140 3.22613 3.42486 3.47652 3.67445 3.69649 3.94938 4.00456 4.11612 4.23520 4.35012 4.35700 4.38546 4.41598 4.44296 4.52089 4.55620 4.66017 4.71545 4.77113 4.86763 4.97123 4.99876 5.07862 5.21206 5.28152 5.40626 5.42842 5.64481 5.68689 5.87091 6.08828 6.15244 6.30621 6.62638 6.76050 6.89698 7.15473 7.59206 8.15105 8.72500 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007518 B = 0.003325 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3723.633637 B = 8420.224065 C =11578.336361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.307 3.693 3 N -0.516 5.516 4 C 0.162 3.838 5 C -0.175 4.175 6 C 0.111 3.889 7 C 0.573 3.427 8 O -0.547 6.547 9 N -0.704 5.704 10 C 0.117 3.883 11 C 0.110 3.890 12 H 0.080 0.920 13 N -0.670 5.670 14 C 0.062 3.938 15 C 0.441 3.559 16 O -0.621 6.621 17 N -0.572 5.572 18 C -0.331 4.331 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.919 5.919 22 Si 0.988 3.012 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.137 4.137 27 C -0.172 4.172 28 C -0.177 4.177 29 N -0.512 5.512 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.220 0.780 34 H 0.177 0.823 35 H 0.411 0.589 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.343 0.657 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.129 0.871 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.521 10.336 10.678 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 N -0.231 5.231 4 C -0.006 4.006 5 C -0.197 4.197 6 C -0.036 4.036 7 C 0.357 3.643 8 O -0.424 6.424 9 N -0.355 5.355 10 C -0.006 4.006 11 C 0.000 4.000 12 H 0.098 0.902 13 N -0.304 5.304 14 C -0.070 4.070 15 C 0.228 3.772 16 O -0.507 6.507 17 N -0.210 5.210 18 C -0.461 4.461 19 H 0.094 0.906 20 C -0.210 4.210 21 N -0.560 5.560 22 Si 0.813 3.187 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.156 4.156 27 C -0.209 4.209 28 C -0.214 4.214 29 N -0.230 5.230 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.237 0.763 34 H 0.194 0.806 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.147 0.853 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.123 0.877 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.621 9.716 9.770 20.090 hybrid contribution -0.708 0.466 -0.029 0.848 sum 13.913 10.182 9.741 19.802 Atomic orbital electron populations 1.20710 0.83869 1.05269 1.04744 1.23699 0.99328 0.82869 0.90131 1.68325 1.11554 1.29996 1.13251 1.24098 0.88757 0.99941 0.87771 1.23206 1.04645 0.92519 0.99357 1.21662 0.90278 0.95047 0.96619 1.17913 0.86277 0.83452 0.76677 1.90778 1.13379 1.87340 1.50942 1.45914 1.11444 1.05577 1.72558 1.21770 0.94891 0.80010 1.03922 1.21306 0.92454 0.93276 0.92926 0.90229 1.59984 1.03729 1.36283 1.30376 1.21732 0.88203 1.03344 0.93703 1.20810 0.82840 0.82288 0.91251 1.90505 1.75078 1.55233 1.29856 1.41899 1.06187 1.62789 1.10099 1.19612 0.89731 1.47476 0.89241 0.90567 1.25957 0.98013 0.96309 1.00744 1.69659 1.14470 1.48223 1.23636 0.84994 0.77407 0.78639 0.77709 1.19862 1.19474 1.19890 1.22278 1.00773 0.90591 1.02006 1.22854 1.02599 1.03226 0.92242 1.22939 0.98297 0.97490 1.02657 1.68174 1.08903 1.32092 1.13856 0.89105 0.89259 0.87811 0.76328 0.80605 0.75170 0.88545 0.90824 0.83649 0.87750 0.91308 0.77044 0.91353 0.85282 0.89642 0.88820 0.87680 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 10.31 71.24 0.73 -0.87 16 2 C 0.31 6.92 7.64 138.79 1.06 7.98 16 3 N -0.52 -10.40 10.32 -187.87 -1.94 -12.33 16 4 C 0.16 2.39 11.31 84.78 0.96 3.35 16 5 C -0.17 -3.09 9.72 22.71 0.22 -2.87 16 6 C 0.11 2.60 6.79 41.98 0.29 2.88 16 7 C 0.57 14.42 7.83 86.97 0.68 15.10 16 8 O -0.55 -15.71 16.43 -3.66 -0.06 -15.77 16 9 N -0.70 -16.00 4.90 -465.39 -2.28 -18.28 16 10 C 0.12 2.40 5.17 86.38 0.45 2.85 16 11 C 0.11 2.34 2.66 44.91 0.12 2.46 16 12 H 0.08 1.51 7.63 -2.38 -0.02 1.49 16 13 N -0.67 -19.53 3.99 -495.58 -1.98 -21.51 16 14 C 0.06 2.01 5.76 85.56 0.49 2.50 16 15 C 0.44 20.36 7.84 87.66 0.69 21.04 16 16 O -0.62 -33.88 15.91 -3.06 -0.05 -33.93 16 17 N -0.57 -28.69 5.29 -306.99 -1.62 -30.31 16 18 C -0.33 -18.59 9.68 84.04 0.81 -17.78 16 19 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 20 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 21 N -0.92 -48.85 13.05 21.66 0.28 -48.57 16 22 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C -0.14 -2.78 5.69 -10.79 -0.06 -2.85 16 27 C -0.17 -4.37 9.86 30.62 0.30 -4.07 16 28 C -0.18 -4.01 10.07 30.62 0.31 -3.70 16 29 N -0.51 -12.63 9.60 -177.08 -1.70 -14.33 16 30 H 0.09 1.66 8.14 -2.38 -0.02 1.65 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.22 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.18 2.48 7.74 -2.91 -0.02 2.45 16 35 H 0.41 9.53 7.11 -92.71 -0.66 8.87 16 36 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.34 10.89 6.88 -89.69 -0.62 10.27 16 39 H 0.10 3.08 5.96 -2.39 -0.01 3.07 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 42 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 43 H 0.13 2.00 8.13 -2.39 -0.02 1.98 16 44 H 0.09 2.86 6.99 -2.39 -0.02 2.84 16 45 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 46 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.08 2.04 5.92 -2.39 -0.01 2.02 16 Total: -1.00 -72.08 399.09 -0.77 -72.84 By element: Atomic # 1 Polarization: 52.50 SS G_CDS: -0.96 Total: 51.53 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 7.52 Total: 25.95 kcal Atomic # 7 Polarization: -136.11 SS G_CDS: -9.24 Total: -145.34 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -0.11 Total: -49.70 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -72.08 -0.77 -72.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265380780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.197 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds