Wall clock time and date at job start Wed Apr 1 2020 04:29:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.50705 * 109.47194 * 2 1
4 4 N 1.32157 * 120.53805 * 263.97988 * 3 2 1
5 5 C 1.31853 * 120.96684 * 180.02562 * 4 3 2
6 6 N 1.31887 * 122.09646 * 359.97438 * 5 4 3
7 7 C 1.32129 * 120.96591 * 359.70169 * 6 5 4
8 8 C 1.39933 * 120.53666 * 84.00269 * 3 2 1
9 9 C 1.47840 * 120.93730 * 359.97438 * 8 3 2
10 10 O 1.21552 * 120.00080 * 354.49195 * 9 8 3
11 11 N 1.34774 * 119.99702 * 174.48209 * 9 8 3
12 12 C 1.46494 * 119.99991 * 179.97438 * 11 9 8
13 13 H 1.08999 * 110.87429 * 37.39917 * 12 11 9
14 14 C 1.55137 * 110.99387 * 273.55086 * 12 11 9
15 15 C 1.54323 * 103.01979 * 206.21741 * 14 12 11
16 16 N 1.47438 * 107.23166 * 22.28398 * 15 14 12
17 17 C 1.46905 * 110.99906 * 123.26068 * 16 15 14
18 18 C 1.50701 * 109.46914 * 69.87048 * 17 16 15
19 19 O 1.21286 * 120.00475 * 0.02562 * 18 17 16
20 20 N 1.34776 * 119.99585 * 180.02562 * 18 17 16
21 21 C 1.37095 * 120.00092 * 180.02562 * 20 18 17
22 22 H 1.08000 * 119.99924 * 359.97438 * 21 20 18
23 23 C 1.38955 * 119.99972 * 179.72415 * 21 20 18
24 24 N 1.31401 * 120.00327 * 0.27790 * 23 21 20
25 25 Si 1.86807 * 119.99774 * 180.27525 * 23 21 20
26 26 H 1.48498 * 109.47112 * 89.99808 * 25 23 21
27 27 H 1.48505 * 109.46966 * 210.00252 * 25 23 21
28 28 H 1.48504 * 109.47168 * 329.99669 * 25 23 21
29 29 C 1.47847 * 108.57001 * 0.98815 * 16 15 14
30 30 H 1.09006 * 109.46829 * 60.00211 * 1 2 3
31 31 H 1.09001 * 109.47177 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.47401 * 300.00480 * 1 2 3
33 33 H 1.08997 * 109.47647 * 239.99995 * 2 1 3
34 34 H 1.08999 * 109.47025 * 120.00138 * 2 1 3
35 35 H 1.08003 * 118.94974 * 179.97438 * 5 4 3
36 36 H 1.08004 * 120.53987 * 180.31071 * 7 6 5
37 37 H 0.97003 * 120.00235 * 0.02562 * 11 9 8
38 38 H 1.09008 * 110.70629 * 87.83383 * 14 12 11
39 39 H 1.09002 * 110.85560 * 324.66993 * 14 12 11
40 40 H 1.09004 * 109.88404 * 262.87397 * 15 14 12
41 41 H 1.08998 * 109.88448 * 141.69393 * 15 14 12
42 42 H 1.09001 * 109.46363 * 309.87306 * 17 16 15
43 43 H 1.08994 * 109.46636 * 189.87122 * 17 16 15
44 44 H 0.97005 * 120.00329 * 0.02562 * 20 18 17
45 45 H 0.96998 * 120.00517 * 180.02562 * 24 23 21
46 46 H 1.09000 * 110.37071 * 94.73242 * 29 16 15
47 47 H 1.08994 * 110.37528 * 217.07304 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.3687 2.0142 -1.1320
5 6 2.8096 3.2567 -1.1417
6 7 2.9361 3.9642 -0.0359
7 6 2.6166 3.4516 1.1393
8 6 2.1506 2.1332 1.1987
9 6 1.7867 1.5129 2.4904
10 8 1.2846 0.4062 2.5132
11 7 2.0120 2.1746 3.6427
12 6 1.6510 1.5604 4.9227
13 1 1.8465 0.4881 4.9078
14 6 0.1694 1.8502 5.2801
15 6 0.1605 1.7659 6.8210
16 7 1.5427 1.9976 7.2790
17 6 1.6041 3.1267 8.2168
18 6 0.9442 2.7382 9.5147
19 8 0.4698 1.6297 9.6459
20 7 0.8812 3.6225 10.5298
21 6 0.2813 3.2690 11.7108
22 1 -0.1412 2.2819 11.8275
23 6 0.2214 4.1788 12.7593
24 7 0.7349 5.3800 12.6171
25 14 -0.5892 3.6944 14.3711
26 1 0.4257 3.0968 15.2756
27 1 -1.1755 4.8989 15.0120
28 1 -1.6623 2.7024 14.1070
29 6 2.3955 2.2438 6.0967
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5139 0.8899
33 1 1.8933 -0.5138 -0.8899
34 1 1.8932 -0.5139 0.8900
35 1 3.0758 3.7096 -2.0854
36 1 2.7182 4.0388 2.0401
37 1 2.4125 3.0579 3.6245
38 1 -0.4862 1.0936 4.8489
39 1 -0.1225 2.8462 4.9469
40 1 -0.1740 0.7776 7.1363
41 1 -0.4991 2.5311 7.2303
42 1 1.0853 3.9839 7.7877
43 1 2.6458 3.3881 8.4028
44 1 1.2603 4.5092 10.4249
45 1 0.6934 6.0150 13.3492
46 1 2.4908 3.3141 5.9138
47 1 3.3779 1.7930 6.2369
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001266358633.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:29:07
Heat of formation + Delta-G solvation = -10.498308 kcal
Electronic energy + Delta-G solvation = -29671.456200 eV
Core-core repulsion = 25468.613836 eV
Total energy + Delta-G solvation = -4202.842364 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.85843 -40.10315 -38.93164 -37.57106 -35.72408 -34.55848 -33.86973 -33.42689
-31.75097 -31.25270 -30.60747 -28.65656 -26.74278 -25.62034 -25.44522 -24.19773
-22.42104 -21.88021 -21.23949 -20.80780 -19.11822 -18.48267 -18.11631 -17.84374
-17.32698 -16.58853 -16.04034 -15.86783 -15.56556 -15.21976 -14.78198 -14.60229
-14.52546 -14.37106 -14.21065 -13.94743 -13.74491 -13.46987 -13.32656 -13.12962
-12.90709 -12.38818 -12.14090 -11.96453 -11.90495 -11.79020 -11.55510 -11.49441
-11.29733 -11.27103 -11.11423 -11.04103 -10.67726 -10.40183 -10.22752 -10.17585
-10.08984 -9.80855 -9.51178 -9.38541 -8.49514 -7.99674 -7.95500 -6.42616
-3.83267 -0.08770 0.47933 2.38891 2.56028 3.17268 3.25808 3.25933
3.31691 3.47329 3.50271 3.78820 3.88958 3.97047 4.15038 4.23267
4.33474 4.43201 4.61453 4.71751 4.84845 4.95582 5.04286 5.07440
5.10605 5.21078 5.23117 5.31512 5.35266 5.51941 5.66452 5.67276
5.69492 5.72883 5.80930 5.86685 5.88866 5.98167 6.03425 6.14805
6.26652 6.36549 6.41740 6.98214 7.14146 7.15890 7.46795 7.54470
7.72753 8.05321 8.60988 9.17617 9.53536 10.05502 10.75198
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.026908 B = 0.001772 C = 0.001698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1040.332283 B =15794.900451 C =16485.404275
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.085 4.085
3 C 0.240 3.760
4 N -0.523 5.523
5 C 0.318 3.682
6 N -0.527 5.527
7 C 0.186 3.814
8 C -0.244 4.244
9 C 0.569 3.431
10 O -0.515 6.515
11 N -0.714 5.714
12 C 0.138 3.862
13 H 0.109 0.891
14 C -0.154 4.154
15 C 0.058 3.942
16 N -0.501 5.501
17 C 0.041 3.959
18 C 0.443 3.557
19 O -0.575 6.575
20 N -0.566 5.566
21 C -0.298 4.298
22 H 0.103 0.897
23 C 0.022 3.978
24 N -0.903 5.903
25 Si 0.930 3.070
26 H -0.278 1.278
27 H -0.284 1.284
28 H -0.270 1.270
29 C 0.037 3.963
30 H 0.048 0.952
31 H 0.067 0.933
32 H 0.063 0.937
33 H 0.081 0.919
34 H 0.113 0.887
35 H 0.202 0.798
36 H 0.171 0.829
37 H 0.398 0.602
38 H 0.080 0.920
39 H 0.067 0.933
40 H 0.087 0.913
41 H 0.059 0.941
42 H 0.050 0.950
43 H 0.089 0.911
44 H 0.391 0.609
45 H 0.271 0.729
46 H 0.050 0.950
47 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.891 -1.790 -26.593 27.099
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.122 4.122
3 C 0.094 3.906
4 N -0.237 5.237
5 C 0.032 3.968
6 N -0.241 5.241
7 C 0.019 3.981
8 C -0.252 4.252
9 C 0.355 3.645
10 O -0.391 6.391
11 N -0.365 5.365
12 C 0.033 3.967
13 H 0.127 0.873
14 C -0.193 4.193
15 C -0.070 4.070
16 N -0.225 5.225
17 C -0.091 4.091
18 C 0.228 3.772
19 O -0.459 6.459
20 N -0.203 5.203
21 C -0.427 4.427
22 H 0.121 0.879
23 C -0.180 4.180
24 N -0.544 5.544
25 Si 0.757 3.243
26 H -0.204 1.204
27 H -0.210 1.210
28 H -0.194 1.194
29 C -0.091 4.091
30 H 0.068 0.932
31 H 0.086 0.914
32 H 0.082 0.918
33 H 0.099 0.901
34 H 0.131 0.869
35 H 0.219 0.781
36 H 0.188 0.812
37 H 0.233 0.767
38 H 0.099 0.901
39 H 0.085 0.915
40 H 0.105 0.895
41 H 0.077 0.923
42 H 0.068 0.932
43 H 0.107 0.893
44 H 0.224 0.776
45 H 0.081 0.919
46 H 0.068 0.932
47 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 4.637 -3.200 -26.931 27.515
hybrid contribution -0.322 1.588 1.155 1.990
sum 4.315 -1.612 -25.777 26.185
Atomic orbital electron populations
1.21566 0.92939 1.02765 1.01798 1.20872 0.97578 0.88780 1.05011
1.22081 0.85468 0.96700 0.86373 1.68441 1.13616 1.12069 1.29584
1.25283 0.88010 0.86339 0.97204 1.68466 1.17952 1.38493 0.99155
1.23484 0.87063 0.90888 0.96708 1.21634 1.09213 0.97914 0.96438
1.17706 0.78643 0.85253 0.82907 1.90772 1.42630 1.18963 1.86742
1.45833 1.63919 1.21024 1.05760 1.22183 0.94506 0.99222 0.80752
0.87315 1.23250 0.96476 1.02251 0.97368 1.22712 0.89552 1.03544
0.91178 1.63241 1.08341 1.39350 1.11596 1.22099 1.01656 0.91584
0.93725 1.19705 0.85699 0.86497 0.85263 1.90528 1.51191 1.21627
1.82504 1.41859 1.51897 1.14372 1.12178 1.19694 1.33127 1.00725
0.89183 0.87921 1.25254 0.97812 0.95103 0.99822 1.69602 1.45732
1.05390 1.33704 0.85863 0.79343 0.77897 0.81222 1.20400 1.20969
1.19432 1.23266 0.98128 0.98738 0.88988 0.93238 0.91414 0.91813
0.90079 0.86916 0.78113 0.81194 0.76682 0.90131 0.91452 0.89486
0.92290 0.93235 0.89320 0.77557 0.91905 0.93225 0.89370
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.12 9.51 37.15 0.35 -0.77 16
2 C -0.08 -0.73 5.49 -27.88 -0.15 -0.88 16
3 C 0.24 2.21 6.12 -81.82 -0.50 1.71 16
4 N -0.52 -4.69 10.36 -10.47 -0.11 -4.80 16
5 C 0.32 2.35 12.27 -92.02 -1.13 1.22 16
6 N -0.53 -4.21 10.42 -14.24 -0.15 -4.36 16
7 C 0.19 1.30 10.80 -16.78 -0.18 1.12 16
8 C -0.24 -2.07 5.91 -104.69 -0.62 -2.68 16
9 C 0.57 5.34 7.73 -12.33 -0.10 5.24 16
10 O -0.51 -6.10 11.79 5.32 0.06 -6.03 16
11 N -0.71 -5.58 5.19 -52.69 -0.27 -5.85 16
12 C 0.14 1.40 3.31 -65.80 -0.22 1.19 16
13 H 0.11 1.27 7.73 -51.93 -0.40 0.87 16
14 C -0.15 -1.75 6.64 -24.91 -0.17 -1.91 16
15 C 0.06 0.87 5.65 -2.84 -0.02 0.86 16
16 N -0.50 -7.74 4.85 -232.69 -1.13 -8.86 16
17 C 0.04 0.69 5.03 -4.97 -0.03 0.66 16
18 C 0.44 10.21 7.43 -10.99 -0.08 10.12 16
19 O -0.58 -15.31 15.12 5.55 0.08 -15.22 16
20 N -0.57 -14.07 5.29 -10.96 -0.06 -14.13 16
21 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16
22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16
23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16
24 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16
25 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16
26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
28 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16
29 C 0.04 0.40 6.31 -2.30 -0.01 0.39 16
30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
32 H 0.06 0.63 6.92 -51.93 -0.36 0.27 16
33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
34 H 0.11 1.08 5.92 -51.93 -0.31 0.78 16
35 H 0.20 0.78 8.06 -52.48 -0.42 0.36 16
36 H 0.17 0.65 6.58 -52.48 -0.35 0.31 16
37 H 0.40 2.03 6.69 -40.82 -0.27 1.76 16
38 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16
39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
40 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16
41 H 0.06 0.96 7.31 -51.93 -0.38 0.59 16
42 H 0.05 0.74 7.96 -51.93 -0.41 0.33 16
43 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16
44 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16
45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16
46 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16
47 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
LS Contribution 387.58 15.07 5.84 5.84
Total: -1.00 -33.48 387.58 -9.63 -43.10
By element:
Atomic # 1 Polarization: 16.11 SS G_CDS: -6.51 Total: 9.60 kcal
Atomic # 6 Polarization: 11.47 SS G_CDS: -3.09 Total: 8.39 kcal
Atomic # 7 Polarization: -60.57 SS G_CDS: -0.99 Total: -61.57 kcal
Atomic # 8 Polarization: -21.40 SS G_CDS: 0.15 Total: -21.26 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -33.48 -9.63 -43.10 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266358633.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.603 kcal
(2) G-P(sol) polarization free energy of solvation -33.476 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.872 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.498 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds