Wall clock time and date at job start Wed Apr 1 2020 04:29:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.50705 * 109.47194 * 2 1
4 4 N 1.32157 * 120.53805 * 263.97988 * 3 2 1
5 5 C 1.31853 * 120.96684 * 180.02562 * 4 3 2
6 6 N 1.31887 * 122.09646 * 359.97438 * 5 4 3
7 7 C 1.32129 * 120.96591 * 359.70169 * 6 5 4
8 8 C 1.39933 * 120.53666 * 84.00269 * 3 2 1
9 9 C 1.47840 * 120.93730 * 359.97438 * 8 3 2
10 10 O 1.21552 * 120.00080 * 354.49195 * 9 8 3
11 11 N 1.34774 * 119.99702 * 174.48209 * 9 8 3
12 12 C 1.46494 * 119.99991 * 179.97438 * 11 9 8
13 13 H 1.08999 * 110.87429 * 37.39917 * 12 11 9
14 14 C 1.55137 * 110.99387 * 273.55086 * 12 11 9
15 15 C 1.54323 * 103.01979 * 206.21741 * 14 12 11
16 16 N 1.47438 * 107.23166 * 22.28398 * 15 14 12
17 17 C 1.46905 * 110.99906 * 123.26068 * 16 15 14
18 18 C 1.50701 * 109.46914 * 69.87048 * 17 16 15
19 19 O 1.21286 * 120.00475 * 0.02562 * 18 17 16
20 20 N 1.34776 * 119.99585 * 180.02562 * 18 17 16
21 21 C 1.37095 * 120.00092 * 180.02562 * 20 18 17
22 22 H 1.08000 * 119.99924 * 359.97438 * 21 20 18
23 23 C 1.38955 * 119.99972 * 179.72415 * 21 20 18
24 24 N 1.31401 * 120.00327 * 0.27790 * 23 21 20
25 25 Si 1.86807 * 119.99774 * 180.27525 * 23 21 20
26 26 H 1.48498 * 109.47112 * 89.99808 * 25 23 21
27 27 H 1.48505 * 109.46966 * 210.00252 * 25 23 21
28 28 H 1.48504 * 109.47168 * 329.99669 * 25 23 21
29 29 C 1.47847 * 108.57001 * 0.98815 * 16 15 14
30 30 H 1.09006 * 109.46829 * 60.00211 * 1 2 3
31 31 H 1.09001 * 109.47177 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.47401 * 300.00480 * 1 2 3
33 33 H 1.08997 * 109.47647 * 239.99995 * 2 1 3
34 34 H 1.08999 * 109.47025 * 120.00138 * 2 1 3
35 35 H 1.08003 * 118.94974 * 179.97438 * 5 4 3
36 36 H 1.08004 * 120.53987 * 180.31071 * 7 6 5
37 37 H 0.97003 * 120.00235 * 0.02562 * 11 9 8
38 38 H 1.09008 * 110.70629 * 87.83383 * 14 12 11
39 39 H 1.09002 * 110.85560 * 324.66993 * 14 12 11
40 40 H 1.09004 * 109.88404 * 262.87397 * 15 14 12
41 41 H 1.08998 * 109.88448 * 141.69393 * 15 14 12
42 42 H 1.09001 * 109.46363 * 309.87306 * 17 16 15
43 43 H 1.08994 * 109.46636 * 189.87122 * 17 16 15
44 44 H 0.97005 * 120.00329 * 0.02562 * 20 18 17
45 45 H 0.96998 * 120.00517 * 180.02562 * 24 23 21
46 46 H 1.09000 * 110.37071 * 94.73242 * 29 16 15
47 47 H 1.08994 * 110.37528 * 217.07304 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.3687 2.0142 -1.1320
5 6 2.8096 3.2567 -1.1417
6 7 2.9361 3.9642 -0.0359
7 6 2.6166 3.4516 1.1393
8 6 2.1506 2.1332 1.1987
9 6 1.7867 1.5129 2.4904
10 8 1.2846 0.4062 2.5132
11 7 2.0120 2.1746 3.6427
12 6 1.6510 1.5604 4.9227
13 1 1.8465 0.4881 4.9078
14 6 0.1694 1.8502 5.2801
15 6 0.1605 1.7659 6.8210
16 7 1.5427 1.9976 7.2790
17 6 1.6041 3.1267 8.2168
18 6 0.9442 2.7382 9.5147
19 8 0.4698 1.6297 9.6459
20 7 0.8812 3.6225 10.5298
21 6 0.2813 3.2690 11.7108
22 1 -0.1412 2.2819 11.8275
23 6 0.2214 4.1788 12.7593
24 7 0.7349 5.3800 12.6171
25 14 -0.5892 3.6944 14.3711
26 1 0.4257 3.0968 15.2756
27 1 -1.1755 4.8989 15.0120
28 1 -1.6623 2.7024 14.1070
29 6 2.3955 2.2438 6.0967
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5139 0.8899
33 1 1.8933 -0.5138 -0.8899
34 1 1.8932 -0.5139 0.8900
35 1 3.0758 3.7096 -2.0854
36 1 2.7182 4.0388 2.0401
37 1 2.4125 3.0579 3.6245
38 1 -0.4862 1.0936 4.8489
39 1 -0.1225 2.8462 4.9469
40 1 -0.1740 0.7776 7.1363
41 1 -0.4991 2.5311 7.2303
42 1 1.0853 3.9839 7.7877
43 1 2.6458 3.3881 8.4028
44 1 1.2603 4.5092 10.4249
45 1 0.6934 6.0150 13.3492
46 1 2.4908 3.3141 5.9138
47 1 3.3779 1.7930 6.2369
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001266358633.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:29:06
Heat of formation + Delta-G solvation = -35.658454 kcal
Electronic energy + Delta-G solvation = -29672.547226 eV
Core-core repulsion = 25468.613836 eV
Total energy + Delta-G solvation = -4203.933390 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.46828 -41.01118 -40.20918 -39.00751 -36.44498 -35.92123 -35.27608 -34.09347
-33.28187 -32.52362 -31.57306 -29.64325 -28.13930 -26.49501 -26.04966 -25.80704
-23.08642 -22.70596 -22.24950 -21.80346 -20.80441 -19.83462 -19.14207 -18.75083
-17.90131 -17.67927 -17.48845 -16.81030 -16.54468 -16.43508 -16.17588 -15.65968
-15.59942 -15.39717 -15.17589 -14.94763 -14.72411 -14.65320 -14.41251 -14.24846
-13.75034 -13.55026 -13.54152 -13.28699 -12.97202 -12.79191 -12.75284 -12.56483
-12.48712 -12.40979 -12.32802 -12.11722 -12.00175 -11.76589 -11.71981 -11.47975
-10.85551 -10.78596 -10.39941 -10.30588 -10.14181 -9.98394 -9.21893 -8.45132
-5.93107 -0.67574 -0.10679 1.38438 1.42152 1.54328 1.70367 1.81846
2.09051 2.30197 2.66310 2.86018 2.91714 3.02995 3.22054 3.23596
3.33820 3.52469 3.56663 3.73284 3.77568 4.04735 4.19444 4.24438
4.27507 4.31234 4.34800 4.37917 4.46176 4.47086 4.55277 4.66651
4.72931 4.86824 4.92939 4.99004 5.02135 5.09879 5.18510 5.19824
5.29657 5.42011 5.42753 5.78598 5.86606 6.01745 6.12117 6.37436
6.63456 6.90034 7.06185 7.15691 7.59701 8.16258 8.72201
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.026908 B = 0.001772 C = 0.001698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1040.332283 B =15794.900451 C =16485.404275
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.082 4.082
3 C 0.227 3.773
4 N -0.540 5.540
5 C 0.318 3.682
6 N -0.538 5.538
7 C 0.194 3.806
8 C -0.253 4.253
9 C 0.571 3.429
10 O -0.544 6.544
11 N -0.698 5.698
12 C 0.150 3.850
13 H 0.092 0.908
14 C -0.140 4.140
15 C 0.061 3.939
16 N -0.527 5.527
17 C 0.055 3.945
18 C 0.439 3.561
19 O -0.618 6.618
20 N -0.576 5.576
21 C -0.331 4.331
22 H 0.077 0.923
23 C -0.013 4.013
24 N -0.920 5.920
25 Si 0.990 3.010
26 H -0.272 1.272
27 H -0.271 1.271
28 H -0.275 1.275
29 C 0.043 3.957
30 H 0.051 0.949
31 H 0.073 0.927
32 H 0.047 0.953
33 H 0.087 0.913
34 H 0.101 0.899
35 H 0.232 0.768
36 H 0.204 0.796
37 H 0.415 0.585
38 H 0.074 0.926
39 H 0.084 0.916
40 H 0.055 0.945
41 H 0.041 0.959
42 H 0.075 0.925
43 H 0.115 0.885
44 H 0.396 0.604
45 H 0.277 0.723
46 H 0.082 0.918
47 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.048 0.048 -27.769 28.420
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.120 4.120
3 C 0.081 3.919
4 N -0.254 5.254
5 C 0.032 3.968
6 N -0.252 5.252
7 C 0.027 3.973
8 C -0.261 4.261
9 C 0.358 3.642
10 O -0.422 6.422
11 N -0.351 5.351
12 C 0.045 3.955
13 H 0.110 0.890
14 C -0.180 4.180
15 C -0.067 4.067
16 N -0.252 5.252
17 C -0.076 4.076
18 C 0.226 3.774
19 O -0.503 6.503
20 N -0.214 5.214
21 C -0.461 4.461
22 H 0.095 0.905
23 C -0.213 4.213
24 N -0.561 5.561
25 Si 0.814 3.186
26 H -0.197 1.197
27 H -0.195 1.195
28 H -0.200 1.200
29 C -0.085 4.085
30 H 0.070 0.930
31 H 0.092 0.908
32 H 0.066 0.934
33 H 0.106 0.894
34 H 0.119 0.881
35 H 0.248 0.752
36 H 0.220 0.780
37 H 0.253 0.747
38 H 0.092 0.908
39 H 0.103 0.897
40 H 0.074 0.926
41 H 0.059 0.941
42 H 0.093 0.907
43 H 0.133 0.867
44 H 0.230 0.770
45 H 0.086 0.914
46 H 0.100 0.900
47 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 5.828 -1.318 -28.133 28.761
hybrid contribution -0.664 0.990 1.451 1.878
sum 5.163 -0.327 -26.682 27.179
Atomic orbital electron populations
1.21499 0.92963 1.02966 1.01026 1.20808 0.97517 0.88991 1.04693
1.22189 0.85737 0.96941 0.87014 1.68480 1.14464 1.12933 1.29522
1.25926 0.86752 0.85817 0.98336 1.68574 1.18446 1.38622 0.99572
1.23988 0.85374 0.90317 0.97631 1.21533 1.10342 0.98662 0.95525
1.17851 0.78080 0.84874 0.83444 1.90772 1.43963 1.20340 1.87142
1.45576 1.63527 1.21566 1.04406 1.21854 0.93474 0.98535 0.81669
0.89024 1.23112 0.97452 1.03030 0.94415 1.22535 0.89389 1.01139
0.93654 1.63107 1.08904 1.39463 1.13723 1.21949 1.02471 0.92560
0.90614 1.20882 0.84311 0.85434 0.86729 1.90502 1.52698 1.23482
1.83643 1.41924 1.52332 1.14953 1.12156 1.19622 1.34984 1.00269
0.91179 0.90543 1.25987 0.97924 0.94959 1.02402 1.69655 1.45891
1.05822 1.34726 0.84969 0.78340 0.77842 0.77433 1.19727 1.19543
1.19955 1.23310 0.97365 1.00882 0.86947 0.92955 0.90791 0.93426
0.89418 0.88112 0.75211 0.77972 0.74658 0.90769 0.89733 0.92648
0.94086 0.90719 0.86723 0.76964 0.91359 0.90020 0.88344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.13 9.51 71.98 0.68 -1.45 16
2 C -0.08 -1.41 5.49 29.85 0.16 -1.25 16
3 C 0.23 3.97 6.12 42.92 0.26 4.23 16
4 N -0.54 -8.93 10.36 -187.05 -1.94 -10.87 16
5 C 0.32 4.00 12.27 180.84 2.22 6.22 16
6 N -0.54 -7.17 10.42 -198.97 -2.07 -9.24 16
7 C 0.19 2.16 10.80 85.07 0.92 3.08 16
8 C -0.25 -3.84 5.91 -19.91 -0.12 -3.96 16
9 C 0.57 9.87 7.73 86.79 0.67 10.54 16
10 O -0.54 -12.75 11.79 -3.88 -0.05 -12.80 16
11 N -0.70 -9.03 5.19 -438.88 -2.28 -11.30 16
12 C 0.15 2.78 3.31 46.38 0.15 2.93 16
13 H 0.09 2.08 7.73 -2.39 -0.02 2.06 16
14 C -0.14 -3.04 6.64 31.78 0.21 -2.83 16
15 C 0.06 1.85 5.65 86.65 0.49 2.34 16
16 N -0.53 -15.64 4.85 -890.09 -4.32 -19.96 16
17 C 0.06 1.76 5.03 85.56 0.43 2.19 16
18 C 0.44 20.42 7.43 87.66 0.65 21.07 16
19 O -0.62 -34.02 15.12 -3.05 -0.05 -34.06 16
20 N -0.58 -28.98 5.29 -306.99 -1.62 -30.60 16
21 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16
22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16
23 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16
24 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16
25 Si 0.99 42.83 29.55 68.60 2.03 44.86 16
26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16
28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
29 C 0.04 0.79 6.31 86.77 0.55 1.34 16
30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16
31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
32 H 0.05 0.95 6.92 -2.39 -0.02 0.94 16
33 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16
34 H 0.10 1.98 5.92 -2.39 -0.01 1.96 16
35 H 0.23 1.18 8.06 -2.91 -0.02 1.16 16
36 H 0.20 0.69 6.58 -2.91 -0.02 0.67 16
37 H 0.42 2.53 6.69 -92.71 -0.62 1.91 16
38 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16
39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
40 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16
41 H 0.04 1.36 7.31 -2.39 -0.02 1.34 16
42 H 0.07 2.03 7.96 -2.39 -0.02 2.01 16
43 H 0.11 3.08 8.07 -2.39 -0.02 3.06 16
44 H 0.40 18.75 7.90 -92.70 -0.73 18.02 16
45 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16
46 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16
47 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16
Total: -1.00 -75.00 387.58 -1.77 -76.77
By element:
Atomic # 1 Polarization: 29.87 SS G_CDS: -0.32 Total: 29.55 kcal
Atomic # 6 Polarization: 17.80 SS G_CDS: 8.57 Total: 26.37 kcal
Atomic # 7 Polarization: -118.74 SS G_CDS: -11.95 Total: -130.69 kcal
Atomic # 8 Polarization: -46.77 SS G_CDS: -0.09 Total: -46.86 kcal
Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal
Total: -75.00 -1.77 -76.77 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266358633.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.113 kcal
(2) G-P(sol) polarization free energy of solvation -75.001 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.771 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.658 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds