Wall clock time and date at job start Wed Apr 1 2020 04:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46802 * 2 1 4 4 C 1.53001 * 109.47320 * 240.00218 * 2 1 3 5 5 H 1.08998 * 109.46973 * 56.00301 * 4 2 1 6 6 C 1.53005 * 109.47125 * 296.00703 * 4 2 1 7 7 N 1.46489 * 109.47341 * 185.00017 * 6 4 2 8 8 C 1.34779 * 120.00390 * 180.02562 * 7 6 4 9 9 O 1.21284 * 119.99569 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00353 * 180.02562 * 8 7 6 11 11 H 1.08996 * 112.84840 * 48.79538 * 10 8 7 12 12 C 1.53775 * 113.61484 * 179.97438 * 10 8 7 13 13 C 1.53786 * 87.08161 * 139.97827 * 12 10 8 14 14 C 1.53780 * 87.07912 * 334.56851 * 13 12 10 15 15 F 1.39903 * 113.61165 * 270.88172 * 14 13 12 16 16 F 1.39901 * 113.61377 * 139.98437 * 14 13 12 17 17 N 1.46893 * 109.47300 * 176.00582 * 4 2 1 18 18 C 1.46897 * 111.00213 * 55.50820 * 17 4 2 19 19 C 1.50699 * 109.47351 * 175.47418 * 18 17 4 20 20 O 1.21289 * 120.00321 * 359.97438 * 19 18 17 21 21 N 1.34782 * 120.00113 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00125 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99984 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99795 * 179.97438 * 22 21 19 25 25 N 1.31415 * 120.00447 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99811 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47199 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47262 * 120.00511 * 26 24 22 29 29 H 1.48505 * 109.47424 * 240.00279 * 26 24 22 30 30 H 1.09003 * 109.46549 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47403 * 60.00052 * 1 2 3 32 32 H 1.09003 * 109.47090 * 299.99723 * 1 2 3 33 33 H 1.08995 * 109.47403 * 119.99948 * 2 1 3 34 34 H 1.09001 * 109.47164 * 59.19522 * 3 2 1 35 35 H 1.09000 * 109.46578 * 179.18904 * 3 2 1 36 36 H 1.08999 * 109.46876 * 299.19080 * 3 2 1 37 37 H 1.09004 * 109.46531 * 304.99931 * 6 4 2 38 38 H 1.09002 * 109.46895 * 64.99358 * 6 4 2 39 39 H 0.97008 * 120.00275 * 359.97438 * 7 6 4 40 40 H 1.08994 * 113.61631 * 254.52553 * 12 10 8 41 41 H 1.09003 * 113.61503 * 25.43451 * 12 10 8 42 42 H 1.08998 * 113.61051 * 89.11607 * 13 12 10 43 43 H 1.09001 * 113.61060 * 219.93553 * 13 12 10 44 44 H 1.00902 * 111.00162 * 291.55287 * 17 4 2 45 45 H 1.09000 * 109.47072 * 295.47314 * 18 17 4 46 46 H 1.09003 * 109.47272 * 55.47111 * 18 17 4 47 47 H 0.97002 * 119.99535 * 359.97438 * 21 19 18 48 48 H 0.96994 * 120.00127 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 1 1.6194 -0.2504 -2.1378 6 6 1.6137 -2.1898 -1.2001 7 7 2.2017 -2.9072 -2.3340 8 6 1.9612 -4.2233 -2.4967 9 8 1.2583 -4.8138 -1.7041 10 6 2.5665 -4.9615 -3.6628 11 1 3.6341 -4.7726 -3.7751 12 6 2.1973 -6.4536 -3.7060 13 6 2.0606 -6.2950 -5.2296 14 6 1.7706 -4.8073 -4.9695 15 9 0.4144 -4.5274 -4.7700 16 9 2.3734 -3.9487 -5.8951 17 7 3.5058 -0.6382 -1.2985 18 6 4.1048 -1.1681 -0.0663 19 6 5.6060 -1.1696 -0.1977 20 8 6.1259 -0.7692 -1.2178 21 7 6.3710 -1.6169 0.8178 22 6 7.7367 -1.6188 0.6979 23 1 8.1997 -1.2615 -0.2100 24 6 8.5253 -2.0795 1.7451 25 7 7.9621 -2.5138 2.8501 26 14 10.3862 -2.0814 1.5821 27 1 10.7670 -1.5461 0.2503 28 1 10.9771 -1.2291 2.6450 29 1 10.8940 -3.4699 1.7217 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6648 1.9605 0.8827 35 1 3.1299 1.4426 0.0145 36 1 1.6885 1.9521 -0.8972 37 1 1.9594 -2.6374 -0.2682 38 1 0.5269 -2.2546 -1.2531 39 1 2.7636 -2.4349 -2.9682 40 1 3.0115 -7.1137 -3.4071 41 1 1.2573 -6.6856 -3.2052 42 1 2.9897 -6.4704 -5.7718 43 1 1.2153 -6.8389 -5.6510 44 1 3.8089 0.3089 -1.4696 45 1 3.8146 -0.5417 0.7773 46 1 3.7536 -2.1865 0.0997 47 1 5.9552 -1.9375 1.6334 48 1 8.5127 -2.8357 3.5809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268211205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:00 Heat of formation + Delta-G solvation = -157.613771 kcal Electronic energy + Delta-G solvation = -31836.267949 eV Core-core repulsion = 27176.356993 eV Total energy + Delta-G solvation = -4659.910956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.07627 -47.39527 -40.16871 -39.03121 -37.70912 -37.03707 -34.32170 -34.01327 -32.83434 -31.22015 -29.41252 -27.43470 -27.30644 -25.84366 -25.22902 -24.26432 -22.64301 -21.09150 -20.31525 -19.88157 -18.97475 -18.15014 -17.92456 -17.57559 -16.85135 -16.63189 -16.37157 -15.88162 -15.57087 -14.87353 -14.74416 -14.60238 -14.52554 -14.24234 -14.07427 -13.99292 -13.74428 -13.64996 -13.57386 -13.48607 -13.02926 -12.80917 -12.47422 -12.28149 -12.18485 -12.01157 -11.85097 -11.70025 -11.55629 -11.47652 -11.45240 -11.20535 -11.07604 -10.97835 -10.91794 -10.64382 -10.36052 -10.23955 -9.84074 -9.53301 -8.99925 -8.51940 -8.09363 -7.97468 -6.43085 -3.84067 2.36198 3.06997 3.14800 3.22620 3.25575 3.32471 3.50492 3.89171 3.95580 4.06103 4.08147 4.17188 4.32474 4.56115 4.67199 4.86250 4.89222 5.02891 5.05023 5.14429 5.18775 5.22299 5.23479 5.27388 5.30124 5.47829 5.50429 5.53678 5.58431 5.69453 5.74003 5.80504 5.87057 5.88567 5.94545 5.97965 6.15161 6.21332 6.25131 6.45539 7.11425 7.51990 7.53748 7.56905 8.04792 8.18688 8.59599 9.16542 9.53038 10.04221 10.74653 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008617 B = 0.003191 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.646584 B = 8773.217733 C =10909.018547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.151 4.151 4 C 0.078 3.922 5 H 0.089 0.911 6 C 0.127 3.873 7 N -0.706 5.706 8 C 0.523 3.477 9 O -0.536 6.536 10 C -0.167 4.167 11 H 0.144 0.856 12 C -0.113 4.113 13 C -0.164 4.164 14 C 0.270 3.730 15 F -0.173 7.173 16 F -0.185 7.185 17 N -0.659 5.659 18 C 0.044 3.956 19 C 0.442 3.558 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.412 0.588 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.098 0.902 44 H 0.353 0.647 45 H 0.049 0.951 46 H 0.085 0.915 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 -2.443 -10.607 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.208 4.208 4 C -0.033 4.033 5 H 0.107 0.893 6 C 0.002 3.998 7 N -0.357 5.357 8 C 0.308 3.692 9 O -0.414 6.414 10 C -0.189 4.189 11 H 0.162 0.838 12 C -0.150 4.150 13 C -0.202 4.202 14 C 0.233 3.767 15 F -0.154 7.154 16 F -0.166 7.166 17 N -0.291 5.291 18 C -0.088 4.088 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.248 0.752 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.116 0.884 44 H 0.174 0.826 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.933 -3.198 -10.922 19.580 hybrid contribution 0.750 0.974 0.909 1.529 sum -15.183 -2.224 -10.013 18.323 Atomic orbital electron populations 1.21853 0.94781 1.01988 1.01812 1.21813 0.96569 0.97038 0.99655 1.21862 1.01483 0.95448 1.02014 1.21940 0.89110 0.94324 0.97895 0.89266 1.21473 0.97700 0.90916 0.89663 1.45796 1.51656 1.08937 1.29301 1.19895 0.80959 0.82338 0.86046 1.90691 1.38307 1.67456 1.44897 1.24106 1.03283 0.98957 0.92534 0.83795 1.22750 1.04856 0.93056 0.94358 1.24068 1.05285 0.91662 0.99154 1.21986 0.76411 0.90054 0.88216 1.93052 1.32482 1.94733 1.95123 1.93052 1.82314 1.73417 1.67812 1.60188 1.04344 1.28642 1.35956 1.21759 0.94728 1.00901 0.91453 1.19804 0.87658 0.84623 0.85218 1.90519 1.74298 1.52047 1.29858 1.41877 1.06801 1.55935 1.15452 1.19737 0.80936 1.39783 1.02396 0.87898 1.25258 1.00697 0.96950 0.95016 1.69620 1.36466 1.42851 1.05295 0.85818 0.82284 0.77856 0.78491 1.19223 1.20775 1.20740 0.92315 0.92616 0.92663 0.90384 0.92350 0.92255 0.92456 0.91293 0.91020 0.75184 0.88474 0.87418 0.86592 0.88357 0.82591 0.93356 0.89669 0.77544 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.93 37.16 0.33 -0.94 16 2 C -0.13 -1.31 1.92 -90.62 -0.17 -1.49 16 3 C -0.15 -1.50 8.61 37.16 0.32 -1.18 16 4 C 0.08 0.87 2.28 -67.71 -0.15 0.71 16 5 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 6 C 0.13 1.55 4.41 -4.04 -0.02 1.53 16 7 N -0.71 -9.12 5.39 -60.30 -0.32 -9.44 16 8 C 0.52 7.23 6.80 -10.99 -0.07 7.16 16 9 O -0.54 -8.96 15.90 5.55 0.09 -8.87 16 10 C -0.17 -1.79 4.03 -90.96 -0.37 -2.15 16 11 H 0.14 1.37 8.14 -51.93 -0.42 0.95 16 12 C -0.11 -0.99 7.38 -25.92 -0.19 -1.19 16 13 C -0.16 -1.19 7.87 -25.92 -0.20 -1.40 16 14 C 0.27 2.81 3.10 -25.92 -0.08 2.73 16 15 F -0.17 -2.15 16.69 2.25 0.04 -2.11 16 16 F -0.19 -2.11 17.41 2.25 0.04 -2.07 16 17 N -0.66 -9.37 5.21 -108.00 -0.56 -9.93 16 18 C 0.04 0.74 5.07 -4.98 -0.03 0.71 16 19 C 0.44 10.07 7.83 -10.98 -0.09 9.98 16 20 O -0.58 -15.21 15.88 5.55 0.09 -15.12 16 21 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 22 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 26 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.06 0.52 6.65 -51.93 -0.35 0.17 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.87 6.68 -51.93 -0.35 0.52 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.68 6.23 -51.93 -0.32 0.36 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.95 6.66 -51.93 -0.35 0.60 16 38 H 0.07 0.84 6.79 -51.93 -0.35 0.49 16 39 H 0.41 5.17 8.14 -40.82 -0.33 4.83 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.11 1.09 7.43 -51.93 -0.39 0.71 16 42 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.35 5.18 7.18 -39.29 -0.28 4.90 16 45 H 0.05 0.74 6.05 -51.93 -0.31 0.43 16 46 H 0.09 1.41 6.32 -51.93 -0.33 1.08 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -32.43 393.88 -7.01 -39.45 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -6.99 Total: 17.55 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.96 Total: 6.59 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.22 Total: -57.22 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.18 Total: -23.99 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.43 -7.01 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268211205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.169 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds