Wall clock time and date at job start Wed Apr 1 2020 04:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46802 * 2 1 4 4 C 1.53001 * 109.47320 * 240.00218 * 2 1 3 5 5 H 1.08998 * 109.46973 * 56.00301 * 4 2 1 6 6 C 1.53005 * 109.47125 * 296.00703 * 4 2 1 7 7 N 1.46489 * 109.47341 * 185.00017 * 6 4 2 8 8 C 1.34779 * 120.00390 * 180.02562 * 7 6 4 9 9 O 1.21284 * 119.99569 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00353 * 180.02562 * 8 7 6 11 11 H 1.08996 * 112.84840 * 48.79538 * 10 8 7 12 12 C 1.53775 * 113.61484 * 179.97438 * 10 8 7 13 13 C 1.53786 * 87.08161 * 139.97827 * 12 10 8 14 14 C 1.53780 * 87.07912 * 334.56851 * 13 12 10 15 15 F 1.39903 * 113.61165 * 270.88172 * 14 13 12 16 16 F 1.39901 * 113.61377 * 139.98437 * 14 13 12 17 17 N 1.46893 * 109.47300 * 176.00582 * 4 2 1 18 18 C 1.46897 * 111.00213 * 55.50820 * 17 4 2 19 19 C 1.50699 * 109.47351 * 175.47418 * 18 17 4 20 20 O 1.21289 * 120.00321 * 359.97438 * 19 18 17 21 21 N 1.34782 * 120.00113 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00125 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99984 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99795 * 179.97438 * 22 21 19 25 25 N 1.31415 * 120.00447 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99811 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47199 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47262 * 120.00511 * 26 24 22 29 29 H 1.48505 * 109.47424 * 240.00279 * 26 24 22 30 30 H 1.09003 * 109.46549 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47403 * 60.00052 * 1 2 3 32 32 H 1.09003 * 109.47090 * 299.99723 * 1 2 3 33 33 H 1.08995 * 109.47403 * 119.99948 * 2 1 3 34 34 H 1.09001 * 109.47164 * 59.19522 * 3 2 1 35 35 H 1.09000 * 109.46578 * 179.18904 * 3 2 1 36 36 H 1.08999 * 109.46876 * 299.19080 * 3 2 1 37 37 H 1.09004 * 109.46531 * 304.99931 * 6 4 2 38 38 H 1.09002 * 109.46895 * 64.99358 * 6 4 2 39 39 H 0.97008 * 120.00275 * 359.97438 * 7 6 4 40 40 H 1.08994 * 113.61631 * 254.52553 * 12 10 8 41 41 H 1.09003 * 113.61503 * 25.43451 * 12 10 8 42 42 H 1.08998 * 113.61051 * 89.11607 * 13 12 10 43 43 H 1.09001 * 113.61060 * 219.93553 * 13 12 10 44 44 H 1.00902 * 111.00162 * 291.55287 * 17 4 2 45 45 H 1.09000 * 109.47072 * 295.47314 * 18 17 4 46 46 H 1.09003 * 109.47272 * 55.47111 * 18 17 4 47 47 H 0.97002 * 119.99535 * 359.97438 * 21 19 18 48 48 H 0.96994 * 120.00127 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 1 1.6194 -0.2504 -2.1378 6 6 1.6137 -2.1898 -1.2001 7 7 2.2017 -2.9072 -2.3340 8 6 1.9612 -4.2233 -2.4967 9 8 1.2583 -4.8138 -1.7041 10 6 2.5665 -4.9615 -3.6628 11 1 3.6341 -4.7726 -3.7751 12 6 2.1973 -6.4536 -3.7060 13 6 2.0606 -6.2950 -5.2296 14 6 1.7706 -4.8073 -4.9695 15 9 0.4144 -4.5274 -4.7700 16 9 2.3734 -3.9487 -5.8951 17 7 3.5058 -0.6382 -1.2985 18 6 4.1048 -1.1681 -0.0663 19 6 5.6060 -1.1696 -0.1977 20 8 6.1259 -0.7692 -1.2178 21 7 6.3710 -1.6169 0.8178 22 6 7.7367 -1.6188 0.6979 23 1 8.1997 -1.2615 -0.2100 24 6 8.5253 -2.0795 1.7451 25 7 7.9621 -2.5138 2.8501 26 14 10.3862 -2.0814 1.5821 27 1 10.7670 -1.5461 0.2503 28 1 10.9771 -1.2291 2.6450 29 1 10.8940 -3.4699 1.7217 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6648 1.9605 0.8827 35 1 3.1299 1.4426 0.0145 36 1 1.6885 1.9521 -0.8972 37 1 1.9594 -2.6374 -0.2682 38 1 0.5269 -2.2546 -1.2531 39 1 2.7636 -2.4349 -2.9682 40 1 3.0115 -7.1137 -3.4071 41 1 1.2573 -6.6856 -3.2052 42 1 2.9897 -6.4704 -5.7718 43 1 1.2153 -6.8389 -5.6510 44 1 3.8089 0.3089 -1.4696 45 1 3.8146 -0.5417 0.7773 46 1 3.7536 -2.1865 0.0997 47 1 5.9552 -1.9375 1.6334 48 1 8.5127 -2.8357 3.5809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268211205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:59 Heat of formation + Delta-G solvation = -181.075606 kcal Electronic energy + Delta-G solvation = -31837.285330 eV Core-core repulsion = 27176.356993 eV Total energy + Delta-G solvation = -4660.928337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.93539 -48.26539 -41.21949 -40.37765 -39.18672 -37.93306 -35.97769 -35.37209 -34.02527 -33.22291 -30.43685 -28.73880 -28.08619 -27.03602 -26.04108 -25.88846 -23.57749 -22.06051 -21.54139 -20.98067 -20.31918 -19.81663 -18.99608 -18.56054 -18.25138 -17.53889 -17.33990 -17.12941 -16.84294 -16.45657 -15.98871 -15.87357 -15.66854 -15.46880 -15.15585 -15.13176 -15.00893 -14.73763 -14.54768 -14.49921 -14.02156 -13.89042 -13.66158 -13.56023 -13.45174 -13.11941 -12.97979 -12.86928 -12.73731 -12.46149 -12.43161 -12.38055 -12.17305 -12.12410 -12.10934 -11.87736 -11.76753 -11.54161 -11.50374 -10.88540 -10.34296 -10.08122 -10.00879 -9.34307 -8.46383 -5.95143 1.33964 1.36437 1.41828 1.55871 2.05654 2.09735 2.28967 2.43689 2.72423 2.91814 3.14324 3.20886 3.33590 3.42192 3.51124 3.65457 3.83210 3.97885 4.02717 4.24760 4.28178 4.30146 4.38221 4.40406 4.46128 4.48987 4.50945 4.66309 4.70245 4.73548 4.79165 4.86862 4.90910 4.98941 5.02565 5.17455 5.21014 5.32623 5.39236 5.41333 5.45876 5.85332 6.06952 6.36692 6.47946 6.59718 7.12515 7.13046 7.56603 8.11320 8.71298 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008617 B = 0.003191 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.646584 B = 8773.217733 C =10909.018547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C -0.148 4.148 4 C 0.089 3.911 5 H 0.107 0.893 6 C 0.126 3.874 7 N -0.705 5.705 8 C 0.515 3.485 9 O -0.571 6.571 10 C -0.172 4.172 11 H 0.156 0.844 12 C -0.111 4.111 13 C -0.143 4.143 14 C 0.260 3.740 15 F -0.188 7.188 16 F -0.192 7.192 17 N -0.664 5.664 18 C 0.064 3.936 19 C 0.441 3.559 20 O -0.617 6.617 21 N -0.576 5.576 22 C -0.331 4.331 23 H 0.081 0.919 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.414 0.586 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.353 0.647 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.394 0.606 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.234 -2.604 -11.241 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.205 4.205 4 C -0.022 4.022 5 H 0.125 0.875 6 C 0.002 3.998 7 N -0.355 5.355 8 C 0.301 3.699 9 O -0.451 6.451 10 C -0.194 4.194 11 H 0.174 0.826 12 C -0.149 4.149 13 C -0.180 4.180 14 C 0.223 3.777 15 F -0.169 7.169 16 F -0.173 7.173 17 N -0.297 5.297 18 C -0.068 4.068 19 C 0.229 3.771 20 O -0.503 6.503 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.563 5.563 26 Si 0.816 3.184 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.250 0.750 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.158 0.842 43 H 0.132 0.868 44 H 0.174 0.826 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.227 0.773 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.242 -3.347 -11.555 20.212 hybrid contribution 0.777 1.075 1.091 1.718 sum -15.465 -2.271 -10.465 18.811 Atomic orbital electron populations 1.21813 0.93321 1.02130 1.02729 1.21756 0.97733 0.96839 0.98326 1.21837 1.00229 0.95401 1.03043 1.21956 0.86990 0.93851 0.99366 0.87480 1.21504 0.98087 0.91343 0.88839 1.45885 1.51338 1.08971 1.29296 1.20481 0.80489 0.82498 0.86474 1.90666 1.39941 1.68121 1.46366 1.24283 1.03750 0.99929 0.91457 0.82624 1.22753 1.04639 0.91901 0.95611 1.24080 1.07030 0.88768 0.98154 1.22378 0.75531 0.91789 0.88000 1.93019 1.33669 1.94992 1.95234 1.93036 1.82350 1.73955 1.67957 1.60141 1.06276 1.28605 1.34634 1.21503 0.90218 1.01761 0.93313 1.20807 0.89991 0.82439 0.83907 1.90488 1.75753 1.53017 1.31017 1.41959 1.06361 1.56795 1.16157 1.19699 0.82471 1.41564 1.02287 0.90151 1.26032 1.04863 0.96015 0.94393 1.69685 1.38044 1.42877 1.05718 0.84885 0.76957 0.78262 0.78331 1.19602 1.19709 1.19728 0.92564 0.91546 0.91941 0.91487 0.91603 0.94082 0.91230 0.92884 0.90295 0.74951 0.86807 0.89020 0.84199 0.86786 0.82650 0.91583 0.89271 0.77311 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.93 71.98 0.64 -1.54 16 2 C -0.13 -2.35 1.92 -10.79 -0.02 -2.37 16 3 C -0.15 -2.70 8.61 71.98 0.62 -2.08 16 4 C 0.09 1.85 2.28 44.92 0.10 1.95 16 5 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 6 C 0.13 3.03 4.41 86.38 0.38 3.41 16 7 N -0.70 -18.03 5.39 -463.06 -2.49 -20.52 16 8 C 0.51 14.24 6.80 87.66 0.60 14.83 16 9 O -0.57 -19.37 15.90 -3.04 -0.05 -19.42 16 10 C -0.17 -3.56 4.03 -11.02 -0.04 -3.61 16 11 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 12 C -0.11 -1.83 7.38 31.12 0.23 -1.60 16 13 C -0.14 -1.75 7.87 31.12 0.24 -1.51 16 14 C 0.26 5.12 3.10 31.12 0.10 5.21 16 15 F -0.19 -4.58 16.69 44.97 0.75 -3.83 16 16 F -0.19 -4.15 17.41 44.97 0.78 -3.37 16 17 N -0.66 -18.46 5.21 -495.59 -2.58 -21.04 16 18 C 0.06 2.14 5.07 85.56 0.43 2.57 16 19 C 0.44 20.42 7.83 87.66 0.69 21.10 16 20 O -0.62 -32.77 15.88 -3.06 -0.05 -32.82 16 21 N -0.58 -29.33 5.29 -306.99 -1.62 -30.95 16 22 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 25 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 26 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 30 H 0.06 0.90 6.65 -2.39 -0.02 0.88 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.42 6.68 -2.39 -0.02 1.40 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 0.90 6.23 -2.39 -0.01 0.89 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 1.46 6.66 -2.39 -0.02 1.44 16 38 H 0.08 1.80 6.79 -2.39 -0.02 1.79 16 39 H 0.41 10.20 8.14 -92.70 -0.75 9.45 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 1.83 7.43 -2.39 -0.02 1.82 16 42 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.35 10.12 7.18 -89.69 -0.64 9.47 16 45 H 0.07 1.99 6.05 -2.39 -0.01 1.98 16 46 H 0.09 2.94 6.32 -2.39 -0.02 2.93 16 47 H 0.39 19.39 7.90 -92.71 -0.73 18.66 16 48 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -70.87 393.88 1.19 -69.67 By element: Atomic # 1 Polarization: 49.95 SS G_CDS: -1.10 Total: 48.85 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 5.25 Total: 18.34 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -6.42 Total: -122.13 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -0.10 Total: -52.24 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 1.53 Total: -7.20 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -70.87 1.19 -69.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268211205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.403 kcal (2) G-P(sol) polarization free energy of solvation -70.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds