Wall clock time and date at job start Wed Apr 1 2020 04:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47350 * 2 1 4 4 C 1.53004 * 109.47134 * 120.00065 * 2 1 3 5 5 H 1.09000 * 109.46662 * 300.00026 * 4 2 1 6 6 C 1.52996 * 109.47336 * 59.99783 * 4 2 1 7 7 N 1.46498 * 109.47059 * 175.00083 * 6 4 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 4 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 6 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 6 11 11 N 1.46492 * 109.47441 * 180.02562 * 10 8 7 12 12 N 1.40165 * 126.21022 * 269.69256 * 11 10 8 13 13 C 1.31263 * 107.88519 * 179.82127 * 12 11 10 14 14 C 1.41798 * 132.01138 * 180.02562 * 13 12 11 15 15 C 1.35524 * 119.32825 * 180.42032 * 14 13 12 16 16 C 1.40997 * 119.85681 * 359.97438 * 15 14 13 17 17 C 1.34452 * 120.59786 * 359.97438 * 16 15 14 18 18 N 1.37458 * 120.68420 * 0.02562 * 17 16 15 19 19 C 1.34822 * 131.80143 * 179.97438 * 18 17 16 20 20 O 1.21892 * 126.05862 * 0.03888 * 19 18 17 21 21 N 1.46494 * 109.47171 * 180.02562 * 4 2 1 22 22 C 1.36934 * 120.00488 * 84.99750 * 21 4 2 23 23 H 1.08003 * 119.99785 * 359.97438 * 22 21 4 24 24 C 1.38817 * 120.00391 * 179.97438 * 22 21 4 25 25 N 1.31621 * 119.99622 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00020 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47024 * 90.00240 * 26 24 22 28 28 H 1.48499 * 109.46708 * 210.00099 * 26 24 22 29 29 H 1.48487 * 109.47232 * 330.00094 * 26 24 22 30 30 H 1.09000 * 109.47368 * 300.00340 * 1 2 3 31 31 H 1.09005 * 109.46677 * 60.00317 * 1 2 3 32 32 H 1.09001 * 109.46789 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47368 * 239.99660 * 2 1 3 34 34 H 1.08994 * 109.46929 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.46731 * 300.00022 * 3 2 1 36 36 H 1.09000 * 109.47163 * 59.99534 * 3 2 1 37 37 H 1.09004 * 109.47066 * 55.00351 * 6 4 2 38 38 H 1.08994 * 109.46974 * 295.00498 * 6 4 2 39 39 H 0.97001 * 120.00384 * 0.02562 * 7 6 4 40 40 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 41 41 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 42 42 H 1.08000 * 120.33575 * 0.41950 * 14 13 12 43 43 H 1.08003 * 120.07138 * 179.97438 * 15 14 13 44 44 H 1.08000 * 119.69770 * 180.02562 * 16 15 14 45 45 H 1.08006 * 119.65750 * 180.02562 * 17 16 15 46 46 H 0.97009 * 119.99912 * 264.99313 * 21 4 2 47 47 H 0.97003 * 119.99413 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 7 2.1141 -2.8882 2.3808 8 6 1.8012 -4.1830 2.5858 9 8 1.0401 -4.7499 1.8306 10 6 2.3972 -4.9266 3.7533 11 7 1.9052 -6.3064 3.7560 12 7 0.7562 -6.7745 4.4082 13 6 0.6534 -8.0612 4.1700 14 6 -0.3021 -9.0278 4.5741 15 6 -0.1521 -10.3153 4.1785 16 6 0.9465 -10.6786 3.3727 17 6 1.8493 -9.7582 2.9911 18 7 1.7200 -8.4458 3.3789 19 6 2.4766 -7.3573 3.1329 20 8 3.4976 -7.3287 2.4678 21 7 3.5049 -0.7208 1.2496 22 6 4.1892 0.3542 1.7510 23 1 3.6488 1.2018 2.1459 24 6 5.5773 0.3544 1.7518 25 7 6.2358 -0.6784 1.2701 26 14 6.5107 1.8211 2.4352 27 1 6.7575 1.6188 3.8855 28 1 7.8086 1.9558 1.7263 29 1 5.7081 3.0546 2.2370 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.8183 -2.6511 0.3179 38 1 0.4437 -2.1650 1.3388 39 1 2.7227 -2.4348 2.9849 40 1 3.4837 -4.9287 3.6662 41 1 2.1083 -4.4355 4.6825 42 1 -1.1408 -8.7409 5.1910 43 1 -0.8724 -11.0615 4.4797 44 1 1.0633 -11.7052 3.0585 45 1 2.6849 -10.0532 2.3735 46 1 3.9903 -1.4820 0.8946 47 1 7.2059 -0.6784 1.2710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268220036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:16 Heat of formation + Delta-G solvation = 55.281079 kcal Electronic energy + Delta-G solvation = -30285.278951 eV Core-core repulsion = 26085.288995 eV Total energy + Delta-G solvation = -4199.989956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.14595 -39.59506 -38.45131 -37.31337 -37.06255 -34.08035 -33.90507 -33.13221 -32.79030 -30.49681 -29.63970 -28.72316 -27.47329 -26.09708 -24.54533 -23.57698 -23.29782 -22.27208 -21.67639 -20.31700 -19.31189 -18.67357 -17.82119 -17.62497 -17.14932 -16.79520 -16.36164 -15.94259 -15.50925 -15.26519 -15.15972 -14.91855 -14.59477 -14.05227 -13.83759 -13.55268 -13.41331 -13.38704 -13.13188 -12.88765 -12.47829 -12.32036 -12.24538 -12.04206 -11.97281 -11.92193 -11.63400 -11.06397 -10.97228 -10.89968 -10.82293 -10.66639 -10.49361 -10.31992 -10.18727 -10.10262 -9.96984 -9.55962 -9.38095 -8.93599 -8.68479 -7.90063 -7.04865 -5.82913 -3.12713 0.26178 1.25962 1.35168 2.36105 2.70536 2.80605 3.08473 3.38179 3.44658 3.46372 3.51175 3.82421 4.30833 4.42827 4.52391 4.65034 4.81000 4.84924 4.91061 5.10024 5.29337 5.32815 5.36935 5.51950 5.52462 5.62362 5.62897 5.74138 5.77105 5.86338 5.89362 5.99038 6.03040 6.17059 6.23402 6.36544 6.36988 6.43244 6.52476 6.61806 6.64970 6.87802 7.06090 7.29134 7.31271 7.65273 7.72436 7.83730 8.33889 8.44303 9.45950 10.00481 10.36392 11.38640 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.002415 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.526813 B =11590.900904 C =12803.201390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.115 3.885 7 N -0.706 5.706 8 C 0.495 3.505 9 O -0.541 6.541 10 C 0.140 3.860 11 N -0.414 5.414 12 N -0.273 5.273 13 C 0.290 3.710 14 C -0.119 4.119 15 C -0.047 4.047 16 C -0.189 4.189 17 C 0.134 3.866 18 N -0.480 5.480 19 C 0.651 3.349 20 O -0.532 6.532 21 N -0.722 5.722 22 C -0.238 4.238 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.903 3.097 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.412 0.588 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.157 0.843 43 H 0.147 0.853 44 H 0.154 0.846 45 H 0.169 0.831 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.924 -17.649 7.390 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.060 3.940 5 H 0.072 0.928 6 C -0.009 4.009 7 N -0.358 5.358 8 C 0.279 3.721 9 O -0.418 6.418 10 C 0.015 3.985 11 N -0.232 5.232 12 N -0.098 5.098 13 C 0.024 3.976 14 C -0.140 4.140 15 C -0.072 4.072 16 C -0.212 4.212 17 C 0.015 3.985 18 N -0.196 5.196 19 C 0.351 3.649 20 O -0.403 6.403 21 N -0.363 5.363 22 C -0.369 4.369 23 H 0.091 0.909 24 C -0.207 4.207 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.249 0.751 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.174 0.826 43 H 0.165 0.835 44 H 0.172 0.828 45 H 0.186 0.814 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.903 -16.731 6.886 22.818 hybrid contribution 1.357 0.325 -0.035 1.396 sum -12.546 -16.407 6.851 21.760 Atomic orbital electron populations 1.21941 0.96871 1.00928 1.00946 1.21733 0.93529 0.97830 1.00054 1.21815 1.04227 0.94568 0.98995 1.20547 0.86439 0.90961 0.96077 0.92757 1.21761 0.97259 0.93216 0.88658 1.45866 1.48424 1.10428 1.31087 1.20676 0.82128 0.82735 0.86576 1.90703 1.36221 1.67728 1.47182 1.21386 1.00915 0.76176 0.99995 1.48139 1.21658 1.07642 1.45755 1.77729 1.04908 1.06039 1.21159 1.21513 0.90321 0.92173 0.93621 1.20250 0.98792 0.90513 1.04489 1.21165 0.96575 0.95615 0.93831 1.20761 0.96277 1.00155 1.04021 1.21718 1.00273 0.79628 0.96908 1.43491 1.23660 1.08933 1.43499 1.16440 0.84585 0.80692 0.83164 1.91169 1.23079 1.83144 1.42905 1.42477 0.98702 1.21292 1.73836 1.19184 0.88748 0.96417 1.32542 0.90897 1.24745 0.96503 0.97696 1.01757 1.69667 1.06952 1.29827 1.51113 0.86266 0.79612 0.82304 0.78448 1.21765 1.21891 1.20761 0.93156 0.93561 0.93104 0.91909 0.89471 0.95003 0.94054 0.91876 0.91515 0.75131 0.85078 0.85251 0.82560 0.83515 0.82816 0.81376 0.78061 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.84 37.15 0.33 -1.79 16 2 C -0.11 -1.88 2.69 -90.62 -0.24 -2.12 16 3 C -0.14 -2.50 8.26 37.16 0.31 -2.19 16 4 C 0.17 3.10 2.18 -67.93 -0.15 2.96 16 5 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 6 C 0.12 1.98 4.73 -4.04 -0.02 1.96 16 7 N -0.71 -11.65 5.39 -60.30 -0.32 -11.97 16 8 C 0.50 8.52 7.90 -10.98 -0.09 8.43 16 9 O -0.54 -11.31 16.43 5.55 0.09 -11.22 16 10 C 0.14 1.97 6.85 -5.20 -0.04 1.94 16 11 N -0.41 -6.54 3.11 -66.31 -0.21 -6.75 16 12 N -0.27 -3.97 12.62 31.35 0.40 -3.57 16 13 C 0.29 3.53 7.87 -155.68 -1.23 2.31 16 14 C -0.12 -0.90 10.12 -39.19 -0.40 -1.30 16 15 C -0.05 -0.24 10.06 -39.51 -0.40 -0.64 16 16 C -0.19 -1.05 9.97 -39.87 -0.40 -1.45 16 17 C 0.13 1.19 10.90 -16.37 -0.18 1.01 16 18 N -0.48 -6.28 2.93 -66.47 -0.19 -6.47 16 19 C 0.65 10.91 8.70 -86.79 -0.75 10.15 16 20 O -0.53 -10.44 17.86 5.02 0.09 -10.35 16 21 N -0.72 -16.20 4.44 -53.43 -0.24 -16.44 16 22 C -0.24 -5.93 7.57 -15.06 -0.11 -6.05 16 23 H 0.07 1.78 7.39 -52.48 -0.39 1.39 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -26.65 13.06 55.49 0.72 -25.92 16 26 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.09 6.71 -51.93 -0.35 0.74 16 39 H 0.41 6.58 8.14 -40.82 -0.33 6.25 16 40 H 0.13 1.73 8.09 -51.93 -0.42 1.31 16 41 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.15 0.24 8.06 -52.48 -0.42 -0.18 16 44 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 45 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 46 H 0.39 9.60 7.80 -40.82 -0.32 9.28 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -35.45 395.14 -8.85 -44.31 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.66 Total: 13.24 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -3.46 Total: 12.85 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: 0.16 Total: -71.13 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.18 Total: -21.57 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.45 -8.85 -44.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268220036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.589 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds