Wall clock time and date at job start Wed Apr 1 2020 04:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47350 * 2 1 4 4 C 1.53004 * 109.47134 * 120.00065 * 2 1 3 5 5 H 1.09000 * 109.46662 * 300.00026 * 4 2 1 6 6 C 1.52996 * 109.47336 * 59.99783 * 4 2 1 7 7 N 1.46498 * 109.47059 * 175.00083 * 6 4 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 4 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 6 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 6 11 11 N 1.46492 * 109.47441 * 180.02562 * 10 8 7 12 12 N 1.40165 * 126.21022 * 269.69256 * 11 10 8 13 13 C 1.31263 * 107.88519 * 179.82127 * 12 11 10 14 14 C 1.41798 * 132.01138 * 180.02562 * 13 12 11 15 15 C 1.35524 * 119.32825 * 180.42032 * 14 13 12 16 16 C 1.40997 * 119.85681 * 359.97438 * 15 14 13 17 17 C 1.34452 * 120.59786 * 359.97438 * 16 15 14 18 18 N 1.37458 * 120.68420 * 0.02562 * 17 16 15 19 19 C 1.34822 * 131.80143 * 179.97438 * 18 17 16 20 20 O 1.21892 * 126.05862 * 0.03888 * 19 18 17 21 21 N 1.46494 * 109.47171 * 180.02562 * 4 2 1 22 22 C 1.36934 * 120.00488 * 84.99750 * 21 4 2 23 23 H 1.08003 * 119.99785 * 359.97438 * 22 21 4 24 24 C 1.38817 * 120.00391 * 179.97438 * 22 21 4 25 25 N 1.31621 * 119.99622 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00020 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47024 * 90.00240 * 26 24 22 28 28 H 1.48499 * 109.46708 * 210.00099 * 26 24 22 29 29 H 1.48487 * 109.47232 * 330.00094 * 26 24 22 30 30 H 1.09000 * 109.47368 * 300.00340 * 1 2 3 31 31 H 1.09005 * 109.46677 * 60.00317 * 1 2 3 32 32 H 1.09001 * 109.46789 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47368 * 239.99660 * 2 1 3 34 34 H 1.08994 * 109.46929 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.46731 * 300.00022 * 3 2 1 36 36 H 1.09000 * 109.47163 * 59.99534 * 3 2 1 37 37 H 1.09004 * 109.47066 * 55.00351 * 6 4 2 38 38 H 1.08994 * 109.46974 * 295.00498 * 6 4 2 39 39 H 0.97001 * 120.00384 * 0.02562 * 7 6 4 40 40 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 41 41 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 42 42 H 1.08000 * 120.33575 * 0.41950 * 14 13 12 43 43 H 1.08003 * 120.07138 * 179.97438 * 15 14 13 44 44 H 1.08000 * 119.69770 * 180.02562 * 16 15 14 45 45 H 1.08006 * 119.65750 * 180.02562 * 17 16 15 46 46 H 0.97009 * 119.99912 * 264.99313 * 21 4 2 47 47 H 0.97003 * 119.99413 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 7 2.1141 -2.8882 2.3808 8 6 1.8012 -4.1830 2.5858 9 8 1.0401 -4.7499 1.8306 10 6 2.3972 -4.9266 3.7533 11 7 1.9052 -6.3064 3.7560 12 7 0.7562 -6.7745 4.4082 13 6 0.6534 -8.0612 4.1700 14 6 -0.3021 -9.0278 4.5741 15 6 -0.1521 -10.3153 4.1785 16 6 0.9465 -10.6786 3.3727 17 6 1.8493 -9.7582 2.9911 18 7 1.7200 -8.4458 3.3789 19 6 2.4766 -7.3573 3.1329 20 8 3.4976 -7.3287 2.4678 21 7 3.5049 -0.7208 1.2496 22 6 4.1892 0.3542 1.7510 23 1 3.6488 1.2018 2.1459 24 6 5.5773 0.3544 1.7518 25 7 6.2358 -0.6784 1.2701 26 14 6.5107 1.8211 2.4352 27 1 6.7575 1.6188 3.8855 28 1 7.8086 1.9558 1.7263 29 1 5.7081 3.0546 2.2370 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.8183 -2.6511 0.3179 38 1 0.4437 -2.1650 1.3388 39 1 2.7227 -2.4348 2.9849 40 1 3.4837 -4.9287 3.6662 41 1 2.1083 -4.4355 4.6825 42 1 -1.1408 -8.7409 5.1910 43 1 -0.8724 -11.0615 4.4797 44 1 1.0633 -11.7052 3.0585 45 1 2.6849 -10.0532 2.3735 46 1 3.9903 -1.4820 0.8946 47 1 7.2059 -0.6784 1.2710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268220036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:15 Heat of formation + Delta-G solvation = 30.880003 kcal Electronic energy + Delta-G solvation = -30286.337061 eV Core-core repulsion = 26085.288995 eV Total energy + Delta-G solvation = -4201.048066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.10925 -40.95318 -39.47257 -38.79195 -38.17090 -35.38589 -34.95211 -34.89404 -33.72016 -32.22146 -30.67088 -29.86285 -28.74580 -27.46307 -25.83009 -24.98729 -24.13037 -23.47916 -22.93766 -21.70679 -20.76651 -19.54267 -19.33167 -18.64864 -18.64187 -17.76360 -17.60182 -17.05357 -16.96588 -16.41891 -16.33190 -15.93104 -15.71407 -15.52601 -15.33134 -15.01928 -14.91840 -14.54140 -14.40543 -13.98623 -13.75760 -13.47015 -13.30659 -13.23818 -13.00857 -12.91372 -12.85964 -12.71161 -12.66461 -12.46809 -12.30002 -12.02346 -11.78710 -11.63780 -11.59193 -11.49210 -11.37634 -11.30038 -10.84808 -10.50196 -10.13041 -8.97272 -8.77386 -7.87437 -5.15223 -0.41425 0.36019 0.53313 1.24757 1.42183 1.49936 1.51376 1.58431 1.80543 2.22289 2.41908 2.59604 2.94987 3.45098 3.59458 3.66719 3.78125 3.84250 3.90402 3.98609 4.04030 4.08310 4.24247 4.27315 4.29335 4.42044 4.60083 4.64878 4.69309 4.73899 4.90802 4.95803 4.96226 5.04507 5.08942 5.13736 5.24187 5.26981 5.28428 5.38844 5.45830 5.60076 5.63990 5.67305 5.76329 6.30992 6.31818 6.42101 6.64001 7.06820 7.39818 8.10661 8.35874 9.35382 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.002415 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.526813 B =11590.900904 C =12803.201390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.174 3.826 5 H 0.063 0.937 6 C 0.124 3.876 7 N -0.701 5.701 8 C 0.495 3.505 9 O -0.581 6.581 10 C 0.140 3.860 11 N -0.420 5.420 12 N -0.313 5.313 13 C 0.289 3.711 14 C -0.138 4.138 15 C -0.020 4.020 16 C -0.151 4.151 17 C 0.081 3.919 18 N -0.482 5.482 19 C 0.631 3.369 20 O -0.582 6.582 21 N -0.728 5.728 22 C -0.213 4.213 23 H 0.082 0.918 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.960 3.040 27 H -0.289 1.289 28 H -0.307 1.307 29 H -0.270 1.270 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.416 0.584 40 H 0.134 0.866 41 H 0.165 0.835 42 H 0.182 0.818 43 H 0.199 0.801 44 H 0.199 0.801 45 H 0.173 0.827 46 H 0.371 0.629 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.086 -19.142 8.821 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.065 3.935 5 H 0.081 0.919 6 C 0.000 4.000 7 N -0.352 5.352 8 C 0.281 3.719 9 O -0.461 6.461 10 C 0.015 3.985 11 N -0.236 5.236 12 N -0.140 5.140 13 C 0.025 3.975 14 C -0.160 4.160 15 C -0.045 4.045 16 C -0.173 4.173 17 C -0.036 4.036 18 N -0.196 5.196 19 C 0.331 3.669 20 O -0.457 6.457 21 N -0.368 5.368 22 C -0.344 4.344 23 H 0.100 0.900 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.791 3.209 27 H -0.216 1.216 28 H -0.234 1.234 29 H -0.195 1.195 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.253 0.747 40 H 0.152 0.848 41 H 0.182 0.818 42 H 0.199 0.801 43 H 0.216 0.784 44 H 0.216 0.784 45 H 0.190 0.810 46 H 0.203 0.797 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.147 -18.225 8.353 26.380 hybrid contribution 2.136 0.577 -0.492 2.266 sum -15.011 -17.648 7.861 24.466 Atomic orbital electron populations 1.21847 0.93933 1.01714 1.02308 1.21636 0.95932 0.96932 0.98394 1.21723 1.01678 0.95312 1.00394 1.20690 0.83976 0.91849 0.97014 0.91871 1.21638 0.98026 0.92253 0.88113 1.45832 1.48185 1.10435 1.30777 1.21184 0.81348 0.82596 0.86804 1.90670 1.38186 1.68486 1.48782 1.21508 1.00874 0.76038 1.00033 1.48281 1.22131 1.07715 1.45509 1.77707 1.05204 1.07583 1.23474 1.22407 0.90387 0.92306 0.92380 1.20758 0.98791 0.90621 1.05827 1.21833 0.96271 0.95408 0.90948 1.21441 0.94100 1.01085 1.00664 1.22273 1.02806 0.78734 0.99795 1.43565 1.23190 1.09502 1.43353 1.16771 0.84771 0.82001 0.83371 1.91098 1.25211 1.84193 1.45241 1.42602 1.00481 1.20192 1.73486 1.19478 0.88721 0.96512 1.29724 0.90004 1.25395 0.97668 0.99916 1.03608 1.69825 1.06334 1.31891 1.53988 0.85334 0.77870 0.80232 0.77505 1.21617 1.23434 1.19513 0.91912 0.92098 0.92644 0.93508 0.93207 0.93096 0.93194 0.93920 0.89954 0.74704 0.84794 0.81769 0.80105 0.78427 0.78435 0.80989 0.79737 0.94508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.84 71.98 0.64 -3.01 16 2 C -0.11 -3.57 2.69 -10.79 -0.03 -3.60 16 3 C -0.13 -4.63 8.26 71.98 0.59 -4.03 16 4 C 0.17 6.25 2.18 44.99 0.10 6.35 16 5 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 6 C 0.12 4.29 4.73 86.38 0.41 4.70 16 7 N -0.70 -23.59 5.39 -463.07 -2.49 -26.08 16 8 C 0.50 17.66 7.90 87.66 0.69 18.35 16 9 O -0.58 -25.25 16.43 -3.04 -0.05 -25.30 16 10 C 0.14 4.11 6.85 85.64 0.59 4.70 16 11 N -0.42 -13.93 3.11 -481.79 -1.50 -15.43 16 12 N -0.31 -9.27 12.62 -54.72 -0.69 -9.96 16 13 C 0.29 6.93 7.87 134.32 1.06 7.99 16 14 C -0.14 -1.69 10.12 22.52 0.23 -1.46 16 15 C -0.02 -0.10 10.06 22.32 0.22 0.12 16 16 C -0.15 -1.06 9.97 22.08 0.22 -0.84 16 17 C 0.08 1.37 10.90 82.94 0.90 2.28 16 18 N -0.48 -12.88 2.93 -482.33 -1.41 -14.29 16 19 C 0.63 22.56 8.70 179.01 1.56 24.11 16 20 O -0.58 -24.77 17.86 -4.96 -0.09 -24.86 16 21 N -0.73 -33.18 4.44 -322.95 -1.43 -34.62 16 22 C -0.21 -10.63 7.57 84.04 0.64 -9.99 16 23 H 0.08 3.91 7.39 -2.91 -0.02 3.89 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 25 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 26 Si 0.96 44.64 29.55 68.60 2.03 46.67 16 27 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.05 1.40 6.55 -2.39 -0.02 1.38 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 2.10 6.01 -2.39 -0.01 2.08 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.08 2.62 6.71 -2.39 -0.02 2.60 16 39 H 0.42 13.47 8.14 -92.71 -0.75 12.71 16 40 H 0.13 3.81 8.09 -2.39 -0.02 3.79 16 41 H 0.16 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.20 -0.86 8.06 -2.91 -0.02 -0.88 16 44 H 0.20 -0.29 8.06 -2.91 -0.02 -0.32 16 45 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 46 H 0.37 19.16 7.80 -92.70 -0.72 18.43 16 47 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -83.16 395.14 2.46 -80.70 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.46 Total: 38.40 kcal Atomic # 6 Polarization: 33.83 SS G_CDS: 8.28 Total: 42.11 kcal Atomic # 7 Polarization: -150.47 SS G_CDS: -7.25 Total: -157.72 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.14 Total: -50.16 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -83.16 2.46 -80.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268220036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.579 kcal (2) G-P(sol) polarization free energy of solvation -83.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds