Wall clock time and date at job start Wed Apr 1 2020 04:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46961 * 2 1 4 4 C 1.53002 * 109.47067 * 120.00009 * 2 1 3 5 5 C 1.50692 * 109.46933 * 300.00186 * 4 2 1 6 6 O 1.21281 * 120.00514 * 359.97438 * 5 4 2 7 7 N 1.34783 * 120.00098 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00149 * 179.97438 * 7 5 4 9 9 C 1.53514 * 114.16836 * 204.99631 * 8 7 5 10 10 N 1.47482 * 87.93039 * 220.13972 * 9 8 7 11 11 C 1.46901 * 110.99764 * 138.70591 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99672 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46986 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47457 * 119.99901 * 19 17 15 22 22 H 1.48501 * 109.47104 * 239.99973 * 19 17 15 23 23 C 1.47480 * 87.83699 * 27.01095 * 10 9 8 24 24 C 1.53000 * 109.47136 * 239.99949 * 2 1 3 25 25 C 1.53002 * 109.47093 * 60.00077 * 24 2 1 26 26 F 1.39896 * 109.47106 * 175.00122 * 25 24 2 27 27 F 1.39903 * 109.47337 * 294.99659 * 25 24 2 28 28 H 1.08994 * 109.47089 * 300.00331 * 1 2 3 29 29 H 1.09005 * 109.46758 * 60.00042 * 1 2 3 30 30 H 1.08997 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47110 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47350 * 299.99595 * 3 2 1 33 33 H 1.08994 * 109.47490 * 59.99915 * 3 2 1 34 34 H 1.08996 * 109.46856 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46916 * 59.99969 * 4 2 1 36 36 H 0.96996 * 119.99685 * 359.97438 * 7 5 4 37 37 H 1.08999 * 113.25779 * 337.94959 * 8 7 5 38 38 H 1.08994 * 113.47382 * 105.36815 * 9 8 7 39 39 H 1.09003 * 113.47448 * 334.90723 * 9 8 7 40 40 H 1.09002 * 109.47401 * 49.99700 * 11 10 9 41 41 H 1.09001 * 109.46874 * 289.99713 * 11 10 9 42 42 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 43 43 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 44 44 H 1.08999 * 113.47664 * 87.75895 * 23 10 9 45 45 H 1.08994 * 113.47488 * 218.22090 * 23 10 9 46 46 H 1.08996 * 109.47260 * 179.97438 * 24 2 1 47 47 H 1.09001 * 109.47243 * 300.00273 * 24 2 1 48 48 H 1.08996 * 109.47213 * 54.99759 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5377 -0.0109 2.4796 6 8 0.8408 0.9755 2.3684 7 7 1.8637 -0.4710 3.7038 8 6 1.3757 0.2199 4.9000 9 6 2.2483 0.0119 6.1458 10 7 1.0055 -0.0947 6.9327 11 6 1.1043 -1.1691 7.9297 12 6 -0.0708 -1.0913 8.8700 13 8 -0.9084 -0.2263 8.7237 14 7 -0.1915 -1.9837 9.8729 15 6 -1.2609 -1.9132 10.7280 16 1 -2.0062 -1.1424 10.5983 17 6 -1.3851 -2.8327 11.7622 18 7 -0.4779 -3.7703 11.9204 19 14 -2.8424 -2.7373 12.9270 20 1 -3.7143 -1.6004 12.5367 21 1 -3.6165 -4.0025 12.8560 22 1 -2.3544 -2.5327 14.3145 23 6 0.3365 -0.5704 5.7075 24 6 2.0401 -0.7213 -1.2492 25 6 1.5301 0.0000 -2.4985 26 9 2.0879 -0.5898 -3.6378 27 9 0.1358 -0.0987 -2.5575 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 2.4213 -1.2596 3.7928 37 1 1.1017 1.2586 4.7153 38 1 2.8520 0.8821 6.4032 39 1 2.8272 -0.9113 6.1212 40 1 2.0297 -1.0567 8.4946 41 1 1.1020 -2.1349 7.4244 42 1 0.4781 -2.6756 9.9896 43 1 -0.5648 -4.4125 12.6422 44 1 0.4053 -1.6489 5.5660 45 1 -0.6799 -0.1936 5.5936 46 1 3.1300 -0.7209 -1.2495 47 1 1.6767 -1.7489 -1.2493 48 1 1.8184 1.0502 -2.4548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268350571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:58 Heat of formation + Delta-G solvation = -139.010722 kcal Electronic energy + Delta-G solvation = -30280.728695 eV Core-core repulsion = 25621.624428 eV Total energy + Delta-G solvation = -4659.104267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.39061 -47.38878 -40.87021 -39.78379 -37.83903 -37.07945 -34.28835 -33.83318 -31.29371 -30.67901 -29.79701 -28.23073 -27.56230 -25.96142 -25.52107 -24.26135 -23.42520 -21.00960 -20.41460 -19.36359 -19.26271 -18.11371 -17.91888 -17.62487 -17.35032 -16.57505 -16.29052 -16.14080 -15.75116 -15.33529 -14.85945 -14.79829 -14.60331 -14.39683 -14.28330 -14.14798 -13.91624 -13.83496 -13.35935 -13.26290 -13.17998 -12.77142 -12.71013 -12.44362 -12.29392 -12.11263 -11.85208 -11.64691 -11.53854 -11.48672 -11.41391 -11.13327 -11.09599 -11.07062 -10.81280 -10.68120 -10.34348 -10.22520 -9.76366 -9.51457 -9.18821 -8.87529 -8.23632 -7.96458 -6.42213 -3.82834 2.35641 2.79952 3.16131 3.26718 3.34352 3.41916 3.78371 3.88829 3.94783 4.05619 4.09515 4.21543 4.34949 4.36565 4.48351 4.61088 4.75848 4.83472 4.94384 4.96817 5.01829 5.10777 5.13767 5.23711 5.27739 5.29245 5.34177 5.46234 5.55036 5.61618 5.63928 5.66151 5.75382 5.81381 5.88730 6.00994 6.12980 6.20542 6.25814 6.39895 6.47240 7.06987 7.24137 7.55286 8.00025 8.05996 8.61719 9.18435 9.54020 10.06471 10.75750 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.026873 B = 0.001556 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.697003 B =17988.220650 C =18289.971297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.043 4.043 3 C -0.162 4.162 4 C -0.132 4.132 5 C 0.516 3.484 6 O -0.525 6.525 7 N -0.720 5.720 8 C 0.118 3.882 9 C -0.014 4.014 10 N -0.434 5.434 11 C 0.011 3.989 12 C 0.446 3.554 13 O -0.573 6.573 14 N -0.567 5.567 15 C -0.297 4.297 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.008 4.008 24 C -0.163 4.163 25 C 0.259 3.741 26 F -0.210 7.210 27 F -0.198 7.198 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.400 0.600 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.384 3.057 -26.612 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.044 4.044 3 C -0.219 4.219 4 C -0.172 4.172 5 C 0.303 3.697 6 O -0.402 6.402 7 N -0.371 5.371 8 C 0.013 3.987 9 C -0.144 4.144 10 N -0.156 5.156 11 C -0.121 4.121 12 C 0.231 3.769 13 O -0.456 6.456 14 N -0.205 5.205 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.139 4.139 24 C -0.201 4.201 25 C 0.205 3.795 26 F -0.192 7.192 27 F -0.179 7.179 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.234 0.766 37 H 0.147 0.853 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.025 4.761 -26.261 28.876 hybrid contribution 0.393 -2.011 0.462 2.101 sum 11.418 2.750 -25.799 28.346 Atomic orbital electron populations 1.22536 0.92966 1.02415 1.05332 1.20185 0.97425 0.95474 0.91273 1.22252 1.00277 0.95158 1.04234 1.21735 1.02429 1.00692 0.92380 1.20577 0.80005 0.84588 0.84511 1.90611 1.37188 1.26213 1.86162 1.46042 1.53636 1.31808 1.05619 1.22688 0.95127 0.98775 0.82110 1.24317 0.95110 1.02352 0.92626 1.68794 1.06936 1.35378 1.04535 1.22499 0.99980 0.93539 0.96070 1.19644 0.88257 0.84940 0.84094 1.90539 1.43724 1.37220 1.74103 1.41871 1.24278 1.28123 1.26192 1.19757 1.02132 1.14002 1.06791 0.87875 1.25250 0.98740 0.95658 0.98358 1.69620 1.34870 1.17095 1.32933 0.85800 0.80742 0.78263 0.79560 1.19209 1.20787 1.20751 1.24394 1.01028 0.98617 0.89811 1.22751 1.02981 1.01307 0.93023 1.22042 0.74791 0.99237 0.83405 1.92982 1.85086 1.86858 1.54232 1.92920 1.31245 1.97472 1.96310 0.89502 0.90702 0.93283 0.93000 0.92969 0.88812 0.88689 0.88608 0.76602 0.85260 0.88924 0.91183 0.89260 0.92272 0.77593 0.91977 0.91274 0.88868 0.88695 0.89276 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 7.42 37.16 0.28 -1.24 16 2 C -0.04 -0.27 0.54 -154.51 -0.08 -0.35 16 3 C -0.16 -1.08 7.83 37.16 0.29 -0.79 16 4 C -0.13 -0.72 4.77 -27.89 -0.13 -0.85 16 5 C 0.52 4.53 7.24 -10.99 -0.08 4.45 16 6 O -0.53 -6.44 10.94 5.56 0.06 -6.38 16 7 N -0.72 -5.72 5.39 -53.54 -0.29 -6.01 16 8 C 0.12 1.30 4.59 -67.72 -0.31 0.99 16 9 C -0.01 -0.15 7.45 -7.54 -0.06 -0.21 16 10 N -0.43 -6.95 5.82 -246.09 -1.43 -8.39 16 11 C 0.01 0.19 5.30 -4.97 -0.03 0.17 16 12 C 0.45 10.61 7.85 -10.98 -0.09 10.52 16 13 O -0.57 -15.97 16.01 5.55 0.09 -15.88 16 14 N -0.57 -14.38 5.29 -10.96 -0.06 -14.44 16 15 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 16 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 19 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 C -0.01 -0.12 7.53 -7.54 -0.06 -0.17 16 24 C -0.16 -0.80 4.61 -26.73 -0.12 -0.92 16 25 C 0.26 1.60 4.96 37.16 0.18 1.79 16 26 F -0.21 -1.67 17.34 2.25 0.04 -1.64 16 27 F -0.20 -1.69 13.99 2.25 0.03 -1.66 16 28 H 0.09 0.96 5.51 -51.93 -0.29 0.68 16 29 H 0.07 0.66 5.39 -51.93 -0.28 0.38 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.30 6.32 -51.93 -0.33 -0.02 16 33 H 0.09 0.88 5.51 -51.93 -0.29 0.59 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.40 2.06 8.75 -40.82 -0.36 1.70 16 37 H 0.13 1.65 7.45 -51.93 -0.39 1.26 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 40 H 0.09 1.36 8.08 -51.93 -0.42 0.95 16 41 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 42 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.07 0.88 7.42 -51.93 -0.39 0.49 16 45 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.11 0.48 6.17 -51.93 -0.32 0.15 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -34.39 388.29 -7.51 -41.90 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.05 Total: 8.95 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.45 Total: 5.37 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -1.05 Total: -52.62 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.15 Total: -22.26 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.07 Total: -3.29 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.39 -7.51 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268350571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.113 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds