Wall clock time and date at job start Wed Apr 1 2020 04:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46961 * 2 1 4 4 C 1.53002 * 109.47067 * 120.00009 * 2 1 3 5 5 C 1.50692 * 109.46933 * 300.00186 * 4 2 1 6 6 O 1.21281 * 120.00514 * 359.97438 * 5 4 2 7 7 N 1.34783 * 120.00098 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00149 * 179.97438 * 7 5 4 9 9 C 1.53514 * 114.16836 * 204.99631 * 8 7 5 10 10 N 1.47482 * 87.93039 * 220.13972 * 9 8 7 11 11 C 1.46901 * 110.99764 * 138.70591 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99672 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46986 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47457 * 119.99901 * 19 17 15 22 22 H 1.48501 * 109.47104 * 239.99973 * 19 17 15 23 23 C 1.47480 * 87.83699 * 27.01095 * 10 9 8 24 24 C 1.53000 * 109.47136 * 239.99949 * 2 1 3 25 25 C 1.53002 * 109.47093 * 60.00077 * 24 2 1 26 26 F 1.39896 * 109.47106 * 175.00122 * 25 24 2 27 27 F 1.39903 * 109.47337 * 294.99659 * 25 24 2 28 28 H 1.08994 * 109.47089 * 300.00331 * 1 2 3 29 29 H 1.09005 * 109.46758 * 60.00042 * 1 2 3 30 30 H 1.08997 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47110 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47350 * 299.99595 * 3 2 1 33 33 H 1.08994 * 109.47490 * 59.99915 * 3 2 1 34 34 H 1.08996 * 109.46856 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46916 * 59.99969 * 4 2 1 36 36 H 0.96996 * 119.99685 * 359.97438 * 7 5 4 37 37 H 1.08999 * 113.25779 * 337.94959 * 8 7 5 38 38 H 1.08994 * 113.47382 * 105.36815 * 9 8 7 39 39 H 1.09003 * 113.47448 * 334.90723 * 9 8 7 40 40 H 1.09002 * 109.47401 * 49.99700 * 11 10 9 41 41 H 1.09001 * 109.46874 * 289.99713 * 11 10 9 42 42 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 43 43 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 44 44 H 1.08999 * 113.47664 * 87.75895 * 23 10 9 45 45 H 1.08994 * 113.47488 * 218.22090 * 23 10 9 46 46 H 1.08996 * 109.47260 * 179.97438 * 24 2 1 47 47 H 1.09001 * 109.47243 * 300.00273 * 24 2 1 48 48 H 1.08996 * 109.47213 * 54.99759 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5377 -0.0109 2.4796 6 8 0.8408 0.9755 2.3684 7 7 1.8637 -0.4710 3.7038 8 6 1.3757 0.2199 4.9000 9 6 2.2483 0.0119 6.1458 10 7 1.0055 -0.0947 6.9327 11 6 1.1043 -1.1691 7.9297 12 6 -0.0708 -1.0913 8.8700 13 8 -0.9084 -0.2263 8.7237 14 7 -0.1915 -1.9837 9.8729 15 6 -1.2609 -1.9132 10.7280 16 1 -2.0062 -1.1424 10.5983 17 6 -1.3851 -2.8327 11.7622 18 7 -0.4779 -3.7703 11.9204 19 14 -2.8424 -2.7373 12.9270 20 1 -3.7143 -1.6004 12.5367 21 1 -3.6165 -4.0025 12.8560 22 1 -2.3544 -2.5327 14.3145 23 6 0.3365 -0.5704 5.7075 24 6 2.0401 -0.7213 -1.2492 25 6 1.5301 0.0000 -2.4985 26 9 2.0879 -0.5898 -3.6378 27 9 0.1358 -0.0987 -2.5575 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 2.4213 -1.2596 3.7928 37 1 1.1017 1.2586 4.7153 38 1 2.8520 0.8821 6.4032 39 1 2.8272 -0.9113 6.1212 40 1 2.0297 -1.0567 8.4946 41 1 1.1020 -2.1349 7.4244 42 1 0.4781 -2.6756 9.9896 43 1 -0.5648 -4.4125 12.6422 44 1 0.4053 -1.6489 5.5660 45 1 -0.6799 -0.1936 5.5936 46 1 3.1300 -0.7209 -1.2495 47 1 1.6767 -1.7489 -1.2493 48 1 1.8184 1.0502 -2.4548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268350571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:57 Heat of formation + Delta-G solvation = -166.069049 kcal Electronic energy + Delta-G solvation = -30281.902032 eV Core-core repulsion = 25621.624428 eV Total energy + Delta-G solvation = -4660.277604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.92975 -47.94507 -41.76875 -40.70994 -39.58829 -37.72681 -35.97030 -35.03745 -33.29838 -31.56541 -30.62528 -28.90253 -28.14890 -27.22596 -26.93877 -25.26234 -24.38678 -21.77831 -21.33714 -20.99575 -19.94416 -19.90575 -18.60927 -18.17646 -18.00003 -17.87564 -17.46587 -16.87038 -16.61988 -16.55594 -16.34601 -15.91674 -15.71780 -15.41569 -15.18871 -14.96646 -14.86956 -14.70737 -14.48053 -14.28227 -13.98374 -13.79650 -13.68431 -13.53397 -13.34890 -13.04916 -12.88593 -12.74469 -12.60665 -12.50004 -12.40935 -12.14494 -12.11538 -12.06997 -11.97422 -11.80029 -11.58638 -11.51604 -11.29184 -10.51621 -10.37290 -10.01722 -9.98081 -9.75473 -8.48038 -5.96468 1.35206 1.40521 1.54527 1.69941 2.04909 2.10080 2.29305 2.87453 2.99896 3.18179 3.32280 3.38186 3.51910 3.54420 3.68685 3.80033 3.85378 4.00764 4.07731 4.12309 4.26517 4.28640 4.35524 4.41438 4.49206 4.52578 4.65726 4.70484 4.72642 4.79714 4.87458 4.88323 4.93489 4.95846 5.14597 5.18527 5.26980 5.33830 5.39930 5.43857 5.57453 5.71563 5.88213 6.07079 6.60339 6.63929 7.12796 7.38375 7.56046 8.13419 8.69523 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.026873 B = 0.001556 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.697003 B =17988.220650 C =18289.971297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.040 4.040 3 C -0.161 4.161 4 C -0.125 4.125 5 C 0.509 3.491 6 O -0.565 6.565 7 N -0.706 5.706 8 C 0.136 3.864 9 C 0.002 3.998 10 N -0.477 5.477 11 C 0.026 3.974 12 C 0.439 3.561 13 O -0.622 6.622 14 N -0.575 5.575 15 C -0.334 4.334 16 H 0.074 0.926 17 C -0.011 4.011 18 N -0.919 5.919 19 Si 0.991 3.009 20 H -0.277 1.277 21 H -0.269 1.269 22 H -0.269 1.269 23 C -0.013 4.013 24 C -0.153 4.153 25 C 0.249 3.751 26 F -0.220 7.220 27 F -0.215 7.215 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.418 0.582 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.122 0.878 47 H 0.092 0.908 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.096 1.405 -27.399 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.041 4.041 3 C -0.218 4.218 4 C -0.165 4.165 5 C 0.298 3.702 6 O -0.444 6.444 7 N -0.359 5.359 8 C 0.029 3.971 9 C -0.127 4.127 10 N -0.200 5.200 11 C -0.105 4.105 12 C 0.226 3.774 13 O -0.508 6.508 14 N -0.213 5.213 15 C -0.464 4.464 16 H 0.092 0.908 17 C -0.211 4.211 18 N -0.560 5.560 19 Si 0.815 3.185 20 H -0.202 1.202 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.143 4.143 24 C -0.191 4.191 25 C 0.196 3.804 26 F -0.202 7.202 27 F -0.197 7.197 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.132 0.868 36 H 0.256 0.744 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.140 0.860 47 H 0.111 0.889 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.791 3.062 -27.060 30.525 hybrid contribution -0.483 -1.443 0.657 1.658 sum 13.308 1.619 -26.403 29.612 Atomic orbital electron populations 1.22478 0.95300 1.01722 1.03514 1.20135 0.95483 0.95757 0.92695 1.22206 1.01516 0.95144 1.02938 1.21783 1.04381 1.00700 0.89609 1.21284 0.79233 0.84163 0.85492 1.90630 1.38912 1.28176 1.86722 1.45859 1.53479 1.32142 1.04425 1.22186 0.94163 0.97310 0.83447 1.24329 0.93472 1.04413 0.90438 1.68706 1.10365 1.35460 1.05476 1.22373 0.97212 0.95517 0.95423 1.20907 0.89343 0.83212 0.83941 1.90504 1.46108 1.38952 1.75270 1.41930 1.23929 1.28837 1.26562 1.19666 1.03241 1.14585 1.08894 0.90753 1.25990 1.01141 0.94866 0.99109 1.69665 1.35766 1.17149 1.33399 0.84899 0.77586 0.78224 0.77792 1.20154 1.19465 1.19446 1.24437 0.99807 0.99836 0.90249 1.22695 1.04480 1.00837 0.91068 1.22441 0.73833 1.00557 0.83566 1.92959 1.85138 1.87137 1.54961 1.92888 1.32834 1.97589 1.96388 0.92429 0.91309 0.93389 0.90885 0.92632 0.91805 0.85248 0.86760 0.74400 0.87653 0.88078 0.87596 0.86774 0.89379 0.76885 0.91273 0.89534 0.92740 0.85972 0.88946 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 7.42 71.98 0.53 -2.46 16 2 C -0.04 -0.43 0.54 -52.18 -0.03 -0.45 16 3 C -0.16 -1.90 7.83 71.98 0.56 -1.34 16 4 C -0.13 -0.96 4.77 29.85 0.14 -0.82 16 5 C 0.51 8.19 7.24 87.65 0.63 8.83 16 6 O -0.57 -14.20 10.94 -3.03 -0.03 -14.23 16 7 N -0.71 -9.55 5.39 -441.69 -2.38 -11.94 16 8 C 0.14 2.86 4.59 45.45 0.21 3.06 16 9 C 0.00 0.05 7.45 83.58 0.62 0.67 16 10 N -0.48 -14.90 5.82 -932.48 -5.43 -20.33 16 11 C 0.03 0.87 5.30 85.56 0.45 1.32 16 12 C 0.44 21.21 7.85 87.66 0.69 21.90 16 13 O -0.62 -36.18 16.01 -3.07 -0.05 -36.23 16 14 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 15 C -0.33 -19.27 9.68 84.04 0.81 -18.45 16 16 H 0.07 4.64 7.16 -2.91 -0.02 4.61 16 17 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 18 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 19 Si 0.99 43.33 29.55 68.60 2.03 45.35 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 C -0.01 -0.36 7.53 83.58 0.63 0.27 16 24 C -0.15 -1.04 4.61 30.59 0.14 -0.90 16 25 C 0.25 2.66 4.96 71.98 0.36 3.02 16 26 F -0.22 -3.15 17.34 44.97 0.78 -2.37 16 27 F -0.22 -3.57 13.99 44.97 0.63 -2.94 16 28 H 0.06 1.36 5.51 -2.39 -0.01 1.34 16 29 H 0.07 1.24 5.39 -2.38 -0.01 1.23 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.05 0.59 6.32 -2.38 -0.02 0.57 16 33 H 0.06 1.20 5.51 -2.39 -0.01 1.19 16 34 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.42 2.60 8.75 -92.71 -0.81 1.79 16 37 H 0.11 2.78 7.45 -2.39 -0.02 2.76 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.11 1.30 7.90 -2.39 -0.02 1.28 16 40 H 0.11 3.16 8.08 -2.39 -0.02 3.14 16 41 H 0.09 2.37 7.30 -2.39 -0.02 2.35 16 42 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 43 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.09 2.06 7.42 -2.39 -0.02 2.04 16 45 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.13 0.86 6.17 -2.39 -0.01 0.85 16 Total: -1.00 -79.93 388.29 -0.10 -80.03 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.53 Total: 28.34 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 6.23 Total: 14.49 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -9.15 Total: -112.44 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.08 Total: -50.46 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 1.41 Total: -5.31 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -79.93 -0.10 -80.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268350571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.044 kcal (2) G-P(sol) polarization free energy of solvation -79.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds