Wall clock time and date at job start Wed Apr 1 2020 04:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38574 * 119.96762 * 2 1 4 4 C 1.38814 * 118.06924 * 179.77262 * 3 2 1 5 5 C 1.39720 * 117.89988 * 0.43893 * 4 3 2 6 6 C 1.48151 * 120.18371 * 179.80531 * 5 4 3 7 7 O 1.21516 * 120.00267 * 359.72330 * 6 5 4 8 8 N 1.34784 * 120.00047 * 179.72421 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72817 * 8 6 5 10 10 H 1.09002 * 112.85200 * 336.19079 * 9 8 6 11 11 C 1.53786 * 113.61753 * 107.50245 * 9 8 6 12 12 C 1.53781 * 87.07959 * 89.11345 * 11 9 8 13 13 H 1.09006 * 113.61519 * 270.88270 * 12 11 9 14 14 C 1.53001 * 113.61254 * 139.98579 * 12 11 9 15 15 N 1.46894 * 109.47379 * 87.49991 * 14 12 11 16 16 C 1.46906 * 111.00158 * 179.97438 * 15 14 12 17 17 C 1.50692 * 109.47058 * 180.02562 * 16 15 14 18 18 O 1.21298 * 120.00477 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99853 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99687 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00326 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99541 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99949 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99690 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47384 * 60.00603 * 24 22 20 26 26 H 1.48507 * 109.46864 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47266 * 300.00144 * 24 22 20 28 28 C 1.53779 * 87.08411 * 25.43382 * 12 11 9 29 29 N 1.32782 * 119.63492 * 359.53255 * 5 4 3 30 30 N 1.28353 * 122.02409 * 0.25022 * 29 5 4 31 31 H 1.09005 * 109.46966 * 270.01991 * 1 2 3 32 32 H 1.08994 * 109.47344 * 30.01874 * 1 2 3 33 33 H 1.09000 * 109.47554 * 150.02315 * 1 2 3 34 34 H 1.07998 * 120.96141 * 0.02562 * 3 2 1 35 35 H 1.07999 * 121.05222 * 180.24948 * 4 3 2 36 36 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 37 37 H 1.09001 * 113.61511 * 203.66141 * 11 9 8 38 38 H 1.08999 * 113.61048 * 334.56152 * 11 9 8 39 39 H 1.09001 * 109.47215 * 207.50258 * 14 12 11 40 40 H 1.08996 * 109.47071 * 327.49530 * 14 12 11 41 41 H 1.00905 * 110.99948 * 56.04470 * 15 14 12 42 42 H 1.09006 * 109.46835 * 300.00156 * 16 15 14 43 43 H 1.08997 * 109.46842 * 59.99862 * 16 15 14 44 44 H 0.96991 * 120.00029 * 0.02562 * 19 17 16 45 45 H 0.97001 * 120.00117 * 180.02562 * 23 22 20 46 46 H 1.09003 * 113.61795 * 220.01939 * 28 12 11 47 47 H 1.08997 * 113.61636 * 89.11348 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1545 0.0049 5 6 4.1991 -0.1013 0.0000 6 6 5.6767 -0.2093 0.0005 7 8 6.3594 0.7960 0.0000 8 7 6.2637 -1.4226 0.0014 9 6 7.7248 -1.5293 -0.0041 10 1 8.2123 -0.6447 -0.4139 11 6 8.3137 -1.9933 1.3386 12 6 8.1532 -3.4328 0.8219 13 1 7.1832 -3.8737 1.0519 14 6 9.3244 -4.3481 1.1843 15 7 9.0881 -4.9462 2.5049 16 6 10.1946 -5.8339 2.8866 17 6 9.9170 -6.4280 4.2433 18 8 8.8973 -6.1407 4.8341 19 7 10.8017 -7.2787 4.8003 20 6 10.5492 -7.8188 6.0349 21 1 9.6414 -7.5630 6.5609 22 6 11.4611 -8.6962 6.6090 23 7 12.5655 -9.0079 5.9687 24 14 11.1169 -9.4327 8.2907 25 1 9.8530 -10.2106 8.2413 26 1 12.2358 -10.3295 8.6768 27 1 10.9887 -8.3430 9.2915 28 6 8.2437 -2.8495 -0.5981 29 7 3.4497 -1.1974 0.0004 30 7 2.1672 -1.1450 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6744 2.1444 0.0004 35 1 4.1740 2.0608 0.0091 36 1 5.7187 -2.2250 0.0014 37 1 9.3518 -1.6955 1.4862 38 1 7.6805 -1.7638 2.1956 39 1 9.4127 -5.1379 0.4382 40 1 10.2460 -3.7666 1.2084 41 1 8.2069 -5.4373 2.5270 42 1 10.2884 -6.6340 2.1522 43 1 11.1225 -5.2631 2.9224 44 1 11.6172 -7.5082 4.3281 45 1 13.2019 -9.6207 6.3692 46 1 7.5539 -3.3113 -1.3047 47 1 9.2626 -2.7858 -0.9800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276976636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:03 Heat of formation + Delta-G solvation = 5.478301 kcal Electronic energy + Delta-G solvation = -28365.277655 eV Core-core repulsion = 24163.128088 eV Total energy + Delta-G solvation = -4202.149566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73465 -40.35437 -38.73391 -38.11295 -35.26244 -34.69388 -33.84266 -33.60627 -33.18169 -31.18868 -29.29750 -28.34214 -25.94414 -25.81023 -25.41002 -24.14067 -23.53627 -22.13515 -21.66406 -19.62503 -19.03946 -18.85107 -17.85683 -17.81532 -16.39440 -16.20448 -16.07915 -15.97360 -15.61191 -15.26300 -15.11713 -14.72488 -14.63719 -14.32822 -13.97378 -13.94663 -13.75611 -13.66902 -13.42764 -13.16742 -12.98023 -12.72786 -12.48813 -12.24369 -12.02441 -11.73337 -11.52251 -11.46155 -11.00073 -10.96305 -10.84311 -10.59486 -10.50701 -10.41974 -10.33036 -10.29361 -10.27434 -10.18079 -9.47136 -9.33165 -8.40886 -7.99043 -7.92018 -6.38897 -3.79626 -0.08706 0.21149 2.18313 2.55361 3.13445 3.22341 3.27593 3.30210 3.32310 3.78243 3.94586 3.96798 4.08541 4.10890 4.27323 4.31677 4.38966 4.40637 4.59307 4.71239 4.84870 4.89441 4.93510 5.09105 5.20770 5.26848 5.28884 5.35970 5.39593 5.44715 5.54277 5.55904 5.59676 5.61918 5.70878 5.85885 6.00138 6.01333 6.04617 6.07172 6.30430 6.40590 7.07441 7.28541 7.57691 7.70417 7.72621 8.04038 8.09377 8.64700 9.20808 9.57636 10.09497 10.78829 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.001561 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.349900 B =17931.346772 C =19182.571596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.085 3.915 3 C -0.123 4.123 4 C -0.061 4.061 5 C 0.016 3.984 6 C 0.580 3.420 7 O -0.528 6.528 8 N -0.687 5.687 9 C 0.112 3.888 10 H 0.104 0.896 11 C -0.133 4.133 12 C -0.106 4.106 13 H 0.091 0.909 14 C 0.069 3.931 15 N -0.668 5.668 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.140 4.140 29 N -0.204 5.204 30 N -0.240 5.240 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.413 0.587 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.348 0.652 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.073 0.927 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.604 19.921 -18.918 32.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.152 4.152 4 C -0.090 4.090 5 C -0.130 4.130 6 C 0.363 3.637 7 O -0.403 6.403 8 N -0.338 5.338 9 C 0.007 3.993 10 H 0.122 0.878 11 C -0.172 4.172 12 C -0.125 4.125 13 H 0.110 0.890 14 C -0.060 4.060 15 N -0.300 5.300 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.178 4.178 29 N -0.050 5.050 30 N -0.085 5.085 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.250 0.750 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.167 0.833 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.396 19.582 -18.108 31.843 hybrid contribution 0.119 -0.186 0.046 0.225 sum -17.277 19.396 -18.062 31.638 Atomic orbital electron populations 1.20772 0.86859 1.04517 1.04166 1.23153 0.99533 0.90431 0.92623 1.22347 0.94232 1.00266 0.98358 1.22459 0.95114 0.99196 0.92202 1.22806 0.96336 0.92201 1.01663 1.17517 0.85174 0.84101 0.76882 1.90810 1.63503 1.36033 1.49931 1.45520 1.07401 1.08220 1.72621 1.22026 0.79308 0.99350 0.98589 0.87754 1.23378 1.01960 0.95166 0.96670 1.22583 0.99502 0.95461 0.94913 0.89027 1.21960 0.97861 0.96682 0.89542 1.60068 1.05136 1.37947 1.26852 1.21667 0.95490 0.95089 0.95967 1.19842 0.85953 0.83592 0.87981 1.90523 1.28074 1.63671 1.64450 1.41859 1.20235 1.39902 1.18121 1.19664 1.06462 1.22863 0.93963 0.87996 1.25254 0.95259 0.97447 0.99968 1.69606 1.10006 1.35721 1.39052 0.85916 0.77772 0.78827 0.81682 1.19944 1.20989 1.19909 1.23363 1.02328 0.95128 0.96996 1.73213 0.99906 1.26080 1.05812 1.73119 1.00767 1.24580 1.10021 0.89231 0.89856 0.89480 0.82368 0.81854 0.75033 0.88790 0.90797 0.95473 0.90943 0.83274 0.93997 0.89690 0.77473 0.91859 0.90799 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.19 36.01 0.37 0.03 16 2 C 0.09 0.57 6.87 -82.32 -0.57 0.01 16 3 C -0.12 -0.64 9.86 -39.24 -0.39 -1.03 16 4 C -0.06 -0.44 9.73 -38.82 -0.38 -0.82 16 5 C 0.02 0.16 6.83 -82.83 -0.57 -0.40 16 6 C 0.58 6.40 7.82 -12.19 -0.10 6.30 16 7 O -0.53 -7.00 16.00 5.35 0.09 -6.91 16 8 N -0.69 -6.69 5.25 -53.86 -0.28 -6.97 16 9 C 0.11 1.05 4.32 -67.12 -0.29 0.76 16 10 H 0.10 1.03 7.47 -51.93 -0.39 0.64 16 11 C -0.13 -1.42 7.43 -25.92 -0.19 -1.61 16 12 C -0.11 -1.07 3.78 -89.81 -0.34 -1.41 16 13 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.07 0.83 5.52 -3.83 -0.02 0.80 16 15 N -0.67 -10.89 6.13 -115.06 -0.71 -11.60 16 16 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 17 C 0.44 10.63 7.82 -10.99 -0.09 10.55 16 18 O -0.58 -16.19 15.78 5.54 0.09 -16.10 16 19 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 20 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 C -0.14 -1.11 7.39 -25.92 -0.19 -1.30 16 29 N -0.20 -2.18 10.75 33.32 0.36 -1.82 16 30 N -0.24 -2.41 11.43 33.63 0.38 -2.03 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.08 8.09 -51.93 -0.42 -0.34 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.16 0.24 8.06 -52.49 -0.42 -0.18 16 35 H 0.16 0.97 7.72 -52.49 -0.41 0.56 16 36 H 0.41 3.69 8.06 -40.82 -0.33 3.36 16 37 H 0.09 0.97 7.90 -51.93 -0.41 0.56 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.83 7.84 -51.93 -0.41 0.43 16 41 H 0.35 5.89 8.42 -39.29 -0.33 5.56 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -35.11 403.59 -8.11 -43.22 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -6.75 Total: 13.91 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -3.02 Total: 4.60 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.42 Total: -61.11 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.11 -8.11 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276976636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.700 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds