Wall clock time and date at job start Wed Apr 1 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38574 * 119.96762 * 2 1 4 4 C 1.38814 * 118.06924 * 179.77262 * 3 2 1 5 5 C 1.39720 * 117.89988 * 0.43893 * 4 3 2 6 6 C 1.48151 * 120.18371 * 179.80531 * 5 4 3 7 7 O 1.21516 * 120.00267 * 359.72330 * 6 5 4 8 8 N 1.34784 * 120.00047 * 179.72421 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72817 * 8 6 5 10 10 H 1.09002 * 112.85200 * 336.19079 * 9 8 6 11 11 C 1.53786 * 113.61753 * 107.50245 * 9 8 6 12 12 C 1.53781 * 87.07959 * 89.11345 * 11 9 8 13 13 H 1.09006 * 113.61519 * 270.88270 * 12 11 9 14 14 C 1.53001 * 113.61254 * 139.98579 * 12 11 9 15 15 N 1.46894 * 109.47379 * 87.49991 * 14 12 11 16 16 C 1.46906 * 111.00158 * 179.97438 * 15 14 12 17 17 C 1.50692 * 109.47058 * 180.02562 * 16 15 14 18 18 O 1.21298 * 120.00477 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99853 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99687 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00326 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99541 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99949 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99690 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47384 * 60.00603 * 24 22 20 26 26 H 1.48507 * 109.46864 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47266 * 300.00144 * 24 22 20 28 28 C 1.53779 * 87.08411 * 25.43382 * 12 11 9 29 29 N 1.32782 * 119.63492 * 359.53255 * 5 4 3 30 30 N 1.28353 * 122.02409 * 0.25022 * 29 5 4 31 31 H 1.09005 * 109.46966 * 270.01991 * 1 2 3 32 32 H 1.08994 * 109.47344 * 30.01874 * 1 2 3 33 33 H 1.09000 * 109.47554 * 150.02315 * 1 2 3 34 34 H 1.07998 * 120.96141 * 0.02562 * 3 2 1 35 35 H 1.07999 * 121.05222 * 180.24948 * 4 3 2 36 36 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 37 37 H 1.09001 * 113.61511 * 203.66141 * 11 9 8 38 38 H 1.08999 * 113.61048 * 334.56152 * 11 9 8 39 39 H 1.09001 * 109.47215 * 207.50258 * 14 12 11 40 40 H 1.08996 * 109.47071 * 327.49530 * 14 12 11 41 41 H 1.00905 * 110.99948 * 56.04470 * 15 14 12 42 42 H 1.09006 * 109.46835 * 300.00156 * 16 15 14 43 43 H 1.08997 * 109.46842 * 59.99862 * 16 15 14 44 44 H 0.96991 * 120.00029 * 0.02562 * 19 17 16 45 45 H 0.97001 * 120.00117 * 180.02562 * 23 22 20 46 46 H 1.09003 * 113.61795 * 220.01939 * 28 12 11 47 47 H 1.08997 * 113.61636 * 89.11348 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1545 0.0049 5 6 4.1991 -0.1013 0.0000 6 6 5.6767 -0.2093 0.0005 7 8 6.3594 0.7960 0.0000 8 7 6.2637 -1.4226 0.0014 9 6 7.7248 -1.5293 -0.0041 10 1 8.2123 -0.6447 -0.4139 11 6 8.3137 -1.9933 1.3386 12 6 8.1532 -3.4328 0.8219 13 1 7.1832 -3.8737 1.0519 14 6 9.3244 -4.3481 1.1843 15 7 9.0881 -4.9462 2.5049 16 6 10.1946 -5.8339 2.8866 17 6 9.9170 -6.4280 4.2433 18 8 8.8973 -6.1407 4.8341 19 7 10.8017 -7.2787 4.8003 20 6 10.5492 -7.8188 6.0349 21 1 9.6414 -7.5630 6.5609 22 6 11.4611 -8.6962 6.6090 23 7 12.5655 -9.0079 5.9687 24 14 11.1169 -9.4327 8.2907 25 1 9.8530 -10.2106 8.2413 26 1 12.2358 -10.3295 8.6768 27 1 10.9887 -8.3430 9.2915 28 6 8.2437 -2.8495 -0.5981 29 7 3.4497 -1.1974 0.0004 30 7 2.1672 -1.1450 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6744 2.1444 0.0004 35 1 4.1740 2.0608 0.0091 36 1 5.7187 -2.2250 0.0014 37 1 9.3518 -1.6955 1.4862 38 1 7.6805 -1.7638 2.1956 39 1 9.4127 -5.1379 0.4382 40 1 10.2460 -3.7666 1.2084 41 1 8.2069 -5.4373 2.5270 42 1 10.2884 -6.6340 2.1522 43 1 11.1225 -5.2631 2.9224 44 1 11.6172 -7.5082 4.3281 45 1 13.2019 -9.6207 6.3692 46 1 7.5539 -3.3113 -1.3047 47 1 9.2626 -2.7858 -0.9800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276976636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:02 Heat of formation + Delta-G solvation = -22.275661 kcal Electronic energy + Delta-G solvation = -28366.481157 eV Core-core repulsion = 24163.128088 eV Total energy + Delta-G solvation = -4203.353069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.36247 -41.14597 -40.15487 -39.45431 -36.57579 -35.79862 -35.26557 -34.22633 -34.04481 -33.25733 -30.07169 -29.30317 -27.30758 -26.61360 -26.30090 -25.35647 -24.39507 -23.04585 -22.44275 -21.15834 -20.25990 -19.84705 -19.57686 -18.42247 -17.85027 -17.09287 -16.95026 -16.76878 -16.66335 -16.47939 -16.17977 -15.98003 -15.74512 -15.44930 -15.38446 -15.13204 -14.72421 -14.51106 -14.25698 -14.11259 -13.80210 -13.51999 -13.46528 -13.27673 -13.23118 -13.05659 -12.89155 -12.65462 -12.57545 -12.44056 -12.12849 -11.84663 -11.51079 -11.44303 -11.39035 -11.31332 -11.17107 -10.88008 -10.86897 -10.34326 -10.14346 -10.02043 -9.25051 -8.46917 -5.95894 -0.68821 -0.32616 1.39450 1.41147 1.44828 1.52261 1.82381 2.05221 2.29102 2.48259 2.69339 2.93763 3.20204 3.27213 3.46881 3.48105 3.55266 3.65686 3.79108 3.82274 3.89611 3.95790 4.01597 4.32434 4.46258 4.50704 4.54213 4.55193 4.62322 4.66566 4.73759 4.75201 4.83229 4.86552 4.90556 4.93255 4.99542 5.12569 5.20194 5.21757 5.28500 5.40106 5.59225 5.90972 6.14174 6.27735 6.44268 6.60155 6.90145 7.12132 7.42456 7.55941 8.11692 8.70197 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.001561 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.349900 B =17931.346772 C =19182.571596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.082 3.918 3 C -0.105 4.105 4 C -0.069 4.069 5 C -0.003 4.003 6 C 0.578 3.422 7 O -0.557 6.557 8 N -0.683 5.683 9 C 0.113 3.887 10 H 0.101 0.899 11 C -0.137 4.137 12 C -0.105 4.105 13 H 0.084 0.916 14 C 0.071 3.929 15 N -0.685 5.685 16 C 0.065 3.935 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.273 1.273 28 C -0.119 4.119 29 N -0.228 5.228 30 N -0.277 5.277 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.204 0.796 35 H 0.175 0.825 36 H 0.416 0.584 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.342 0.658 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.085 0.915 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.187 20.726 -20.065 34.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.061 4.061 3 C -0.133 4.133 4 C -0.098 4.098 5 C -0.150 4.150 6 C 0.362 3.638 7 O -0.434 6.434 8 N -0.333 5.333 9 C 0.008 3.992 10 H 0.120 0.880 11 C -0.176 4.176 12 C -0.123 4.123 13 H 0.102 0.898 14 C -0.057 4.057 15 N -0.317 5.317 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.467 4.467 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.193 1.193 27 H -0.198 1.198 28 C -0.157 4.157 29 N -0.074 5.074 30 N -0.121 5.121 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.221 0.779 35 H 0.193 0.807 36 H 0.253 0.747 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.160 0.840 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.962 20.365 -19.289 33.308 hybrid contribution 0.211 -0.368 0.390 0.576 sum -17.751 19.997 -18.899 32.744 Atomic orbital electron populations 1.20929 0.84272 1.05801 1.05127 1.23781 1.01192 0.90087 0.91027 1.22830 0.93267 1.01529 0.95698 1.22711 0.96363 0.98561 0.92142 1.22766 0.95606 0.93365 1.03260 1.17771 0.85838 0.83943 0.76247 1.90778 1.64285 1.36816 1.51559 1.45557 1.07686 1.08145 1.71920 1.22030 0.79077 1.00150 0.97972 0.88049 1.23404 1.01819 0.95998 0.96389 1.22543 0.98608 0.94580 0.96613 0.89774 1.22060 0.98827 0.97126 0.87686 1.60087 1.04291 1.37483 1.29863 1.21530 0.96679 0.96074 0.92412 1.20959 0.84672 0.82294 0.89733 1.90490 1.29721 1.64768 1.66202 1.41927 1.20824 1.40501 1.17750 1.19643 1.06563 1.24903 0.95594 0.90441 1.26036 0.94756 0.97076 1.03293 1.69664 1.10313 1.35712 1.40299 0.84988 0.78053 0.78090 0.77186 1.19700 1.19316 1.19845 1.23294 1.03587 0.93168 0.95651 1.73120 1.00551 1.26813 1.06908 1.73034 1.00600 1.26746 1.11729 0.88202 0.86765 0.90023 0.77924 0.80747 0.74660 0.88347 0.93320 0.93789 0.90023 0.84017 0.91561 0.87868 0.76933 0.91257 0.89600 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.42 10.19 71.24 0.73 0.30 16 2 C 0.08 0.98 6.87 42.59 0.29 1.28 16 3 C -0.10 -0.86 9.86 22.49 0.22 -0.63 16 4 C -0.07 -0.96 9.73 22.77 0.22 -0.74 16 5 C 0.00 -0.06 6.83 41.99 0.29 0.23 16 6 C 0.58 13.24 7.82 86.88 0.68 13.92 16 7 O -0.56 -15.22 16.00 -3.77 -0.06 -15.28 16 8 N -0.68 -13.68 5.25 -442.60 -2.33 -16.01 16 9 C 0.11 2.08 4.32 45.52 0.20 2.27 16 10 H 0.10 1.97 7.47 -2.39 -0.02 1.96 16 11 C -0.14 -2.94 7.43 31.12 0.23 -2.71 16 12 C -0.10 -2.03 3.78 -10.27 -0.04 -2.07 16 13 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 14 C 0.07 1.58 5.52 86.30 0.48 2.05 16 15 N -0.68 -21.89 6.13 -517.94 -3.17 -25.06 16 16 C 0.07 2.28 6.17 85.55 0.53 2.81 16 17 C 0.44 21.29 7.82 87.65 0.69 21.98 16 18 O -0.63 -35.75 15.78 -3.09 -0.05 -35.80 16 19 N -0.57 -30.02 5.29 -306.98 -1.62 -31.64 16 20 C -0.34 -19.58 9.68 84.04 0.81 -18.76 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 24 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 C -0.12 -1.66 7.39 31.12 0.23 -1.43 16 29 N -0.23 -5.07 10.75 -48.49 -0.52 -5.59 16 30 N -0.28 -5.60 11.43 -47.53 -0.54 -6.15 16 31 H 0.10 0.25 8.14 -2.38 -0.02 0.24 16 32 H 0.11 -0.22 8.09 -2.39 -0.02 -0.24 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.20 -0.27 8.06 -2.91 -0.02 -0.29 16 35 H 0.18 1.92 7.72 -2.91 -0.02 1.90 16 36 H 0.42 7.76 8.06 -92.71 -0.75 7.01 16 37 H 0.10 1.99 7.90 -2.39 -0.02 1.97 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.68 7.84 -2.39 -0.02 1.66 16 41 H 0.34 11.61 8.42 -89.69 -0.76 10.85 16 42 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.10 3.24 8.14 -2.39 -0.02 3.23 16 44 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 45 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.12 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -78.90 403.59 -1.17 -80.07 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -1.20 Total: 41.34 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.02 Total: 18.32 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -7.90 Total: -134.24 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.11 Total: -51.08 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -78.90 -1.17 -80.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276976636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.796 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds