Wall clock time and date at job start Wed Apr 1 2020 04:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46813 * 2 1 4 4 C 1.52995 * 109.47343 * 239.99342 * 2 1 3 5 5 C 1.53000 * 109.46545 * 119.99566 * 2 1 3 6 6 H 1.09006 * 109.46695 * 180.02562 * 5 2 1 7 7 C 1.52999 * 109.47437 * 299.99786 * 5 2 1 8 8 N 1.46502 * 109.47163 * 175.00089 * 7 5 2 9 9 C 1.36937 * 120.00086 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99992 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00073 * 180.02562 * 9 8 7 12 12 N 1.31611 * 119.99845 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99844 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47141 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47459 * 119.99733 * 13 11 9 16 16 H 1.48506 * 109.46987 * 239.99866 * 13 11 9 17 17 N 1.46498 * 109.47337 * 60.00419 * 5 2 1 18 18 C 1.34780 * 119.99982 * 84.99934 * 17 5 2 19 19 O 1.21574 * 119.99846 * 359.97438 * 18 17 5 20 20 C 1.47677 * 119.99620 * 180.02562 * 18 17 5 21 21 C 1.39912 * 120.39348 * 359.97438 * 20 18 17 22 22 N 1.31448 * 121.13754 * 180.02562 * 21 20 18 23 23 C 1.32474 * 121.80839 * 359.97438 * 22 21 20 24 24 N 1.37878 * 133.44013 * 179.97438 * 23 22 21 25 25 H 0.96993 * 126.25315 * 359.97438 * 24 23 22 26 26 C 1.36518 * 107.49407 * 180.02562 * 24 23 22 27 27 O 1.35260 * 125.02465 * 180.02562 * 26 24 23 28 28 N 1.30728 * 109.95345 * 359.97438 * 26 24 23 29 29 C 1.35896 * 109.39586 * 359.97438 * 28 26 24 30 30 C 1.39410 * 133.62633 * 179.97438 * 29 28 26 31 31 H 1.08995 * 109.47478 * 300.00264 * 1 2 3 32 32 H 1.08998 * 109.47151 * 60.00752 * 1 2 3 33 33 H 1.09005 * 109.47241 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46598 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47055 * 299.99250 * 3 2 1 36 36 H 1.08995 * 109.47314 * 59.99635 * 3 2 1 37 37 H 1.08997 * 109.47417 * 300.00168 * 4 2 1 38 38 H 1.09002 * 109.46598 * 60.00414 * 4 2 1 39 39 H 1.09001 * 109.46662 * 179.97438 * 4 2 1 40 40 H 1.08992 * 109.47562 * 295.00503 * 7 5 2 41 41 H 1.08999 * 109.46984 * 55.00571 * 7 5 2 42 42 H 0.96993 * 119.99974 * 0.02562 * 8 7 5 43 43 H 0.97007 * 119.99890 * 179.97438 * 12 11 9 44 44 H 0.97002 * 119.99829 * 264.99153 * 17 5 2 45 45 H 1.07995 * 119.42865 * 359.97438 * 21 20 18 46 46 H 0.96703 * 114.00346 * 89.99689 * 27 26 24 47 47 H 1.07998 * 120.97236 * 0.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2493 6 1 3.1299 -0.7208 1.2496 7 6 1.5299 0.0002 2.4985 8 7 1.9174 -0.7564 3.6917 9 6 1.5678 -0.3007 4.9349 10 1 1.0061 0.6163 5.0357 11 6 1.9354 -1.0173 6.0655 12 7 2.6195 -2.1350 5.9426 13 14 1.4580 -0.3960 7.7612 14 1 0.6973 0.8723 7.6276 15 1 0.6134 -1.4110 8.4406 16 1 2.6842 -0.1551 8.5634 17 7 1.5516 -2.1024 1.2494 18 6 2.2285 -3.0565 0.5800 19 8 3.2440 -2.7708 -0.0241 20 6 1.7359 -4.4487 0.5797 21 6 0.5678 -4.7864 1.2718 22 7 0.1165 -6.0210 1.2817 23 6 0.7410 -6.9979 0.6410 24 7 0.4910 -8.3456 0.4920 25 1 -0.2550 -8.8359 0.8713 26 6 1.4859 -8.8640 -0.2859 27 8 1.5863 -10.1613 -0.6552 28 7 2.3266 -7.9210 -0.6220 29 6 1.9220 -6.7419 -0.0811 30 6 2.4296 -5.4439 -0.1144 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 -1.7490 -1.2491 38 1 1.6767 -0.2075 -2.1391 39 1 3.1301 -0.7209 -1.2492 40 1 1.9644 0.9986 2.5444 41 1 0.4436 0.0784 2.4549 42 1 2.4215 -1.5801 3.6012 43 1 2.8767 -2.6356 6.7327 44 1 0.7411 -2.3303 1.7313 45 1 0.0282 -4.0198 1.8079 46 1 1.1377 -10.3697 -1.4862 47 1 3.3341 -5.2146 -0.6583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278977993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:39 Heat of formation + Delta-G solvation = 26.329873 kcal Electronic energy + Delta-G solvation = -30911.019011 eV Core-core repulsion = 26709.773636 eV Total energy + Delta-G solvation = -4201.245374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.66895 -40.30679 -38.95782 -37.58000 -36.93181 -34.44146 -33.97099 -33.33333 -31.58745 -31.06049 -29.61203 -27.71481 -27.12231 -26.68863 -24.53666 -23.89774 -23.52291 -22.16865 -21.51849 -20.70977 -19.62689 -18.65325 -18.46051 -18.11860 -17.17208 -16.76086 -16.47853 -15.89382 -15.57791 -15.39904 -14.84131 -14.68655 -14.03996 -13.91730 -13.85336 -13.70769 -13.46586 -13.22837 -13.10185 -12.75893 -12.69880 -12.46786 -12.16930 -11.92559 -11.79526 -11.48494 -11.37149 -11.27014 -11.19807 -11.08653 -10.83566 -10.73169 -10.51501 -10.20626 -9.96027 -9.91220 -9.75274 -9.37022 -9.14340 -8.90725 -8.76589 -8.59308 -6.95418 -5.78420 -3.08152 0.44247 0.63494 1.75733 2.23425 2.95234 3.09223 3.41594 3.44719 3.47872 3.50083 3.77887 3.97814 4.40093 4.55354 4.57949 4.67872 4.79104 4.95073 5.01819 5.11631 5.19876 5.41795 5.53697 5.57702 5.71072 5.78132 5.79269 5.86279 5.90666 5.93042 6.04842 6.09067 6.12697 6.14828 6.17806 6.21072 6.31862 6.46272 6.47145 6.49821 6.64621 6.73305 6.93797 7.04864 7.22807 7.55141 7.68265 7.78365 8.39081 8.44541 9.51303 10.07268 10.42302 11.43667 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008894 B = 0.003331 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.443785 B = 8403.730472 C =10820.716507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.130 4.130 5 C 0.150 3.850 6 H 0.090 0.910 7 C 0.141 3.859 8 N -0.732 5.732 9 C -0.241 4.241 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.905 3.095 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.701 5.701 18 C 0.569 3.431 19 O -0.534 6.534 20 C -0.187 4.187 21 C 0.184 3.816 22 N -0.481 5.481 23 C 0.268 3.732 24 N -0.587 5.587 25 H 0.429 0.571 26 C 0.462 3.538 27 O -0.436 6.436 28 N -0.467 5.467 29 C 0.002 3.998 30 C 0.047 3.953 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.386 0.614 43 H 0.254 0.746 44 H 0.402 0.598 45 H 0.175 0.825 46 H 0.413 0.587 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 -8.573 -17.290 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.188 4.188 5 C 0.045 3.955 6 H 0.108 0.892 7 C 0.013 3.987 8 N -0.377 5.377 9 C -0.373 4.373 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.577 5.577 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.351 5.351 18 C 0.355 3.645 19 O -0.412 6.412 20 C -0.195 4.195 21 C 0.015 3.985 22 N -0.193 5.193 23 C 0.032 3.968 24 N -0.215 5.215 25 H 0.269 0.731 26 C 0.156 3.844 27 O -0.238 6.238 28 N -0.198 5.198 29 C -0.117 4.117 30 C 0.019 3.981 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.238 0.762 45 H 0.191 0.809 46 H 0.272 0.728 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.399 -8.780 -17.200 20.344 hybrid contribution -1.106 -0.391 1.180 1.664 sum -7.505 -9.171 -16.020 19.927 Atomic orbital electron populations 1.21923 0.94693 1.01649 1.01689 1.20900 0.95841 0.95651 0.95382 1.21886 1.01235 0.94946 1.01791 1.21895 1.01712 0.99617 0.95540 1.21328 1.00006 0.79640 0.94512 0.89244 1.21110 0.97459 0.94766 0.85353 1.42373 1.66985 1.27794 1.00512 1.19230 1.28910 1.05549 0.83561 0.91124 1.24737 1.00829 0.97387 0.97792 1.69673 1.43167 1.16498 1.28378 0.86150 0.77586 0.77796 0.84816 1.20573 1.21917 1.21923 1.45822 1.28920 1.08570 1.51779 1.17630 0.83732 0.83834 0.79283 1.90779 1.24389 1.82092 1.43905 1.20771 0.99032 0.95534 1.04175 1.22855 0.91766 0.91190 0.92646 1.66400 1.33386 0.99368 1.20194 1.18736 0.94650 0.85149 0.98251 1.42996 1.25572 1.06749 1.46137 0.73067 1.20140 0.85627 0.85752 0.92871 1.84868 1.76506 1.16488 1.45933 1.70720 1.26476 0.97360 1.25277 1.19309 0.96091 0.93581 1.02752 1.20829 0.97592 0.87312 0.92359 0.91845 0.93185 0.92870 0.92520 0.92901 0.91880 0.92919 0.93991 0.91899 0.94599 0.95282 0.78031 0.93555 0.76188 0.80858 0.72849 0.82397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.97 37.16 0.30 -1.35 16 2 C -0.08 -0.98 0.62 -154.51 -0.10 -1.08 16 3 C -0.14 -1.70 8.12 37.16 0.30 -1.40 16 4 C -0.13 -1.73 7.00 37.16 0.26 -1.47 16 5 C 0.15 2.35 1.69 -67.93 -0.11 2.23 16 6 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 7 C 0.14 2.56 5.10 -4.04 -0.02 2.54 16 8 N -0.73 -17.32 5.43 -59.91 -0.33 -17.64 16 9 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 10 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 13 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 17 N -0.70 -10.38 3.59 -54.80 -0.20 -10.58 16 18 C 0.57 8.82 6.13 -12.40 -0.08 8.74 16 19 O -0.53 -9.47 13.52 5.30 0.07 -9.40 16 20 C -0.19 -2.62 5.89 -104.84 -0.62 -3.23 16 21 C 0.18 2.41 10.69 -17.09 -0.18 2.23 16 22 N -0.48 -6.52 10.36 -11.92 -0.12 -6.65 16 23 C 0.27 3.48 8.45 -155.42 -1.31 2.16 16 24 N -0.59 -5.58 6.23 -13.36 -0.08 -5.67 16 25 H 0.43 2.71 8.96 -40.82 -0.37 2.34 16 26 C 0.46 4.60 9.39 -88.82 -0.83 3.77 16 27 O -0.44 -2.82 13.63 -17.47 -0.24 -3.06 16 28 N -0.47 -6.15 11.32 -12.21 -0.14 -6.28 16 29 C 0.00 0.03 7.22 -84.67 -0.61 -0.58 16 30 C 0.05 0.65 9.75 -38.57 -0.38 0.28 16 31 H 0.06 0.75 6.32 -51.93 -0.33 0.43 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.60 7.60 -51.93 -0.39 0.20 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.77 6.54 -51.93 -0.34 0.43 16 37 H 0.05 0.74 5.77 -51.93 -0.30 0.44 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.92 7.53 -51.93 -0.39 0.53 16 40 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 41 H 0.03 0.51 6.17 -51.93 -0.32 0.19 16 42 H 0.39 9.83 7.33 -40.82 -0.30 9.53 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.40 5.57 6.64 -40.82 -0.27 5.30 16 45 H 0.17 1.96 6.39 -52.49 -0.34 1.62 16 46 H 0.41 0.25 9.06 45.56 0.41 0.66 16 47 H 0.16 2.13 7.72 -52.49 -0.41 1.72 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -34.74 380.57 -8.54 -43.28 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -5.32 Total: 14.26 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -3.63 Total: 5.85 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -0.14 Total: -73.61 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.17 Total: -12.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.74 -8.54 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278977993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.614 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds