Wall clock time and date at job start Wed Apr 1 2020 04:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46813 * 2 1 4 4 C 1.52995 * 109.47343 * 239.99342 * 2 1 3 5 5 C 1.53000 * 109.46545 * 119.99566 * 2 1 3 6 6 H 1.09006 * 109.46695 * 180.02562 * 5 2 1 7 7 C 1.52999 * 109.47437 * 299.99786 * 5 2 1 8 8 N 1.46502 * 109.47163 * 175.00089 * 7 5 2 9 9 C 1.36937 * 120.00086 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99992 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00073 * 180.02562 * 9 8 7 12 12 N 1.31611 * 119.99845 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99844 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47141 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47459 * 119.99733 * 13 11 9 16 16 H 1.48506 * 109.46987 * 239.99866 * 13 11 9 17 17 N 1.46498 * 109.47337 * 60.00419 * 5 2 1 18 18 C 1.34780 * 119.99982 * 84.99934 * 17 5 2 19 19 O 1.21574 * 119.99846 * 359.97438 * 18 17 5 20 20 C 1.47677 * 119.99620 * 180.02562 * 18 17 5 21 21 C 1.39912 * 120.39348 * 359.97438 * 20 18 17 22 22 N 1.31448 * 121.13754 * 180.02562 * 21 20 18 23 23 C 1.32474 * 121.80839 * 359.97438 * 22 21 20 24 24 N 1.37878 * 133.44013 * 179.97438 * 23 22 21 25 25 H 0.96993 * 126.25315 * 359.97438 * 24 23 22 26 26 C 1.36518 * 107.49407 * 180.02562 * 24 23 22 27 27 O 1.35260 * 125.02465 * 180.02562 * 26 24 23 28 28 N 1.30728 * 109.95345 * 359.97438 * 26 24 23 29 29 C 1.35896 * 109.39586 * 359.97438 * 28 26 24 30 30 C 1.39410 * 133.62633 * 179.97438 * 29 28 26 31 31 H 1.08995 * 109.47478 * 300.00264 * 1 2 3 32 32 H 1.08998 * 109.47151 * 60.00752 * 1 2 3 33 33 H 1.09005 * 109.47241 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46598 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47055 * 299.99250 * 3 2 1 36 36 H 1.08995 * 109.47314 * 59.99635 * 3 2 1 37 37 H 1.08997 * 109.47417 * 300.00168 * 4 2 1 38 38 H 1.09002 * 109.46598 * 60.00414 * 4 2 1 39 39 H 1.09001 * 109.46662 * 179.97438 * 4 2 1 40 40 H 1.08992 * 109.47562 * 295.00503 * 7 5 2 41 41 H 1.08999 * 109.46984 * 55.00571 * 7 5 2 42 42 H 0.96993 * 119.99974 * 0.02562 * 8 7 5 43 43 H 0.97007 * 119.99890 * 179.97438 * 12 11 9 44 44 H 0.97002 * 119.99829 * 264.99153 * 17 5 2 45 45 H 1.07995 * 119.42865 * 359.97438 * 21 20 18 46 46 H 0.96703 * 114.00346 * 89.99689 * 27 26 24 47 47 H 1.07998 * 120.97236 * 0.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2493 6 1 3.1299 -0.7208 1.2496 7 6 1.5299 0.0002 2.4985 8 7 1.9174 -0.7564 3.6917 9 6 1.5678 -0.3007 4.9349 10 1 1.0061 0.6163 5.0357 11 6 1.9354 -1.0173 6.0655 12 7 2.6195 -2.1350 5.9426 13 14 1.4580 -0.3960 7.7612 14 1 0.6973 0.8723 7.6276 15 1 0.6134 -1.4110 8.4406 16 1 2.6842 -0.1551 8.5634 17 7 1.5516 -2.1024 1.2494 18 6 2.2285 -3.0565 0.5800 19 8 3.2440 -2.7708 -0.0241 20 6 1.7359 -4.4487 0.5797 21 6 0.5678 -4.7864 1.2718 22 7 0.1165 -6.0210 1.2817 23 6 0.7410 -6.9979 0.6410 24 7 0.4910 -8.3456 0.4920 25 1 -0.2550 -8.8359 0.8713 26 6 1.4859 -8.8640 -0.2859 27 8 1.5863 -10.1613 -0.6552 28 7 2.3266 -7.9210 -0.6220 29 6 1.9220 -6.7419 -0.0811 30 6 2.4296 -5.4439 -0.1144 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 -1.7490 -1.2491 38 1 1.6767 -0.2075 -2.1391 39 1 3.1301 -0.7209 -1.2492 40 1 1.9644 0.9986 2.5444 41 1 0.4436 0.0784 2.4549 42 1 2.4215 -1.5801 3.6012 43 1 2.8767 -2.6356 6.7327 44 1 0.7411 -2.3303 1.7313 45 1 0.0282 -4.0198 1.8079 46 1 1.1377 -10.3697 -1.4862 47 1 3.3341 -5.2146 -0.6583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278977993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:39 Heat of formation + Delta-G solvation = -2.245081 kcal Electronic energy + Delta-G solvation = -30912.258114 eV Core-core repulsion = 26709.773636 eV Total energy + Delta-G solvation = -4202.484477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.58719 -41.49958 -39.89255 -38.62274 -37.85673 -36.14230 -34.92242 -34.67940 -33.01798 -32.48481 -30.68204 -29.19834 -28.07957 -27.78884 -25.95882 -25.03060 -24.84661 -23.12875 -22.96618 -21.85667 -20.40733 -19.83627 -19.51941 -19.27301 -18.72534 -17.78038 -17.55354 -16.99031 -16.88304 -16.54669 -16.35476 -15.66911 -15.51079 -15.23955 -15.05617 -14.82577 -14.76698 -14.56076 -14.25487 -14.14470 -13.61806 -13.43710 -13.41184 -13.00485 -12.98517 -12.89615 -12.72889 -12.49524 -12.42483 -12.29296 -12.15513 -12.10458 -11.96473 -11.71119 -11.57354 -11.23357 -11.16390 -10.88348 -10.44363 -10.18581 -9.86098 -9.68624 -8.93328 -7.89439 -5.17822 -0.53109 -0.39676 0.94945 1.35583 1.50510 1.51616 1.60869 1.79413 2.04337 2.48300 2.59830 2.68570 3.07363 3.44685 3.45913 3.61114 3.69711 3.73177 3.74936 3.90235 4.09400 4.13459 4.31249 4.40446 4.48739 4.53542 4.70374 4.78423 4.82758 4.89768 4.91490 4.97655 5.03649 5.13718 5.15606 5.17886 5.23112 5.31384 5.38165 5.48957 5.56839 5.62168 5.66673 5.69024 6.31242 6.33669 6.41948 6.55837 6.63736 7.22141 7.39158 8.13957 8.36861 9.33508 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008894 B = 0.003331 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.443785 B = 8403.730472 C =10820.716507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.123 4.123 5 C 0.159 3.841 6 H 0.060 0.940 7 C 0.143 3.857 8 N -0.743 5.743 9 C -0.235 4.235 10 H 0.080 0.920 11 C -0.073 4.073 12 N -0.967 5.967 13 Si 0.968 3.032 14 H -0.264 1.264 15 H -0.296 1.296 16 H -0.301 1.301 17 N -0.695 5.695 18 C 0.571 3.429 19 O -0.562 6.562 20 C -0.192 4.192 21 C 0.181 3.819 22 N -0.486 5.486 23 C 0.260 3.740 24 N -0.572 5.572 25 H 0.445 0.555 26 C 0.488 3.512 27 O -0.431 6.431 28 N -0.505 5.505 29 C -0.009 4.009 30 C 0.038 3.962 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.048 0.952 42 H 0.374 0.626 43 H 0.247 0.753 44 H 0.408 0.592 45 H 0.189 0.811 46 H 0.441 0.559 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 -8.680 -18.027 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.180 4.180 5 C 0.054 3.946 6 H 0.078 0.922 7 C 0.017 3.983 8 N -0.386 5.386 9 C -0.367 4.367 10 H 0.098 0.902 11 C -0.266 4.266 12 N -0.618 5.618 13 Si 0.798 3.202 14 H -0.188 1.188 15 H -0.223 1.223 16 H -0.229 1.229 17 N -0.346 5.346 18 C 0.358 3.642 19 O -0.442 6.442 20 C -0.200 4.200 21 C 0.013 3.987 22 N -0.199 5.199 23 C 0.022 3.978 24 N -0.201 5.201 25 H 0.289 0.711 26 C 0.182 3.818 27 O -0.237 6.237 28 N -0.237 5.237 29 C -0.128 4.128 30 C 0.010 3.990 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.206 0.794 43 H 0.056 0.944 44 H 0.245 0.755 45 H 0.206 0.794 46 H 0.305 0.695 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.531 -8.880 -17.979 21.792 hybrid contribution -0.459 -0.475 1.289 1.448 sum -8.990 -9.355 -16.691 21.141 Atomic orbital electron populations 1.21896 0.93035 1.02123 1.02551 1.20854 0.97045 0.95719 0.93510 1.21886 1.00748 0.94325 1.02781 1.21797 1.00347 0.99363 0.96490 1.21157 0.98291 0.80243 0.94930 0.92223 1.21253 0.98333 0.94363 0.84355 1.42557 1.66787 1.27801 1.01418 1.19636 1.27235 1.05148 0.84664 0.90227 1.25479 1.01878 0.97967 1.01257 1.69832 1.45294 1.18033 1.28667 0.85154 0.76799 0.77714 0.80561 1.18798 1.22305 1.22857 1.45742 1.28940 1.08266 1.51619 1.17821 0.83251 0.84419 0.78728 1.90762 1.25610 1.82604 1.45191 1.20605 0.99713 0.94577 1.05133 1.23034 0.91535 0.91588 0.92564 1.66453 1.33520 0.99544 1.20392 1.18909 0.94488 0.86274 0.98087 1.42947 1.25906 1.05526 1.45681 0.71127 1.20198 0.84341 0.86257 0.91017 1.84854 1.76959 1.14024 1.47854 1.70711 1.28167 0.97750 1.27100 1.19404 0.96565 0.93777 1.03065 1.20843 0.97647 0.87832 0.92641 0.91940 0.91327 0.92647 0.93411 0.90769 0.91991 0.93905 0.91968 0.93953 0.94363 0.93404 0.79429 0.94367 0.75521 0.79446 0.69452 0.82863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 7.97 71.98 0.57 -2.32 16 2 C -0.07 -1.73 0.62 -52.18 -0.03 -1.76 16 3 C -0.14 -3.16 8.12 71.98 0.58 -2.57 16 4 C -0.12 -3.17 7.00 71.98 0.50 -2.67 16 5 C 0.16 5.00 1.69 44.99 0.08 5.07 16 6 H 0.06 2.25 7.58 -2.38 -0.02 2.24 16 7 C 0.14 5.12 5.10 86.38 0.44 5.56 16 8 N -0.74 -35.20 5.43 -343.45 -1.87 -37.07 16 9 C -0.23 -12.40 9.99 84.03 0.84 -11.56 16 10 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 11 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 12 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 13 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 14 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 16 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 17 N -0.70 -20.85 3.59 -445.56 -1.60 -22.45 16 18 C 0.57 18.28 6.13 86.74 0.53 18.81 16 19 O -0.56 -20.89 13.52 -3.95 -0.05 -20.94 16 20 C -0.19 -5.53 5.89 -20.01 -0.12 -5.65 16 21 C 0.18 4.75 10.69 85.16 0.91 5.66 16 22 N -0.49 -12.93 10.36 -191.62 -1.99 -14.91 16 23 C 0.26 6.54 8.45 133.83 1.13 7.67 16 24 N -0.57 -9.85 6.23 -307.00 -1.91 -11.76 16 25 H 0.44 4.58 8.96 -92.71 -0.83 3.75 16 26 C 0.49 8.82 9.39 179.72 1.69 10.51 16 27 O -0.43 -4.35 13.63 -85.44 -1.16 -5.52 16 28 N -0.50 -12.98 11.32 -306.41 -3.47 -16.45 16 29 C -0.01 -0.24 7.22 39.42 0.28 0.04 16 30 C 0.04 1.10 9.75 22.92 0.22 1.33 16 31 H 0.06 1.32 6.32 -2.39 -0.02 1.30 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.13 7.60 -2.38 -0.02 1.11 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.41 6.54 -2.39 -0.02 1.39 16 37 H 0.04 1.19 5.77 -2.39 -0.01 1.17 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.04 1.26 7.53 -2.39 -0.02 1.24 16 40 H 0.04 1.39 6.71 -2.39 -0.02 1.37 16 41 H 0.05 1.58 6.17 -2.39 -0.01 1.57 16 42 H 0.37 19.44 7.33 -92.71 -0.68 18.76 16 43 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 44 H 0.41 11.23 6.64 -92.71 -0.62 10.62 16 45 H 0.19 4.18 6.39 -2.91 -0.02 4.16 16 46 H 0.44 -0.96 9.06 -74.06 -0.67 -1.63 16 47 H 0.15 4.42 7.72 -2.91 -0.02 4.40 16 Total: -1.00 -75.28 380.57 -3.36 -78.64 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -1.72 Total: 36.74 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 8.10 Total: 24.49 kcal Atomic # 7 Polarization: -150.12 SS G_CDS: -10.55 Total: -160.67 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.22 Total: -26.46 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -75.28 -3.36 -78.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278977993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.395 kcal (2) G-P(sol) polarization free energy of solvation -75.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds