Wall clock time and date at job start Wed Apr 1 2020 04:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47288 * 2 1 4 4 N 1.46502 * 109.45986 * 302.28421 * 3 2 1 5 5 C 1.36932 * 119.99985 * 304.29162 * 4 3 2 6 6 H 1.08004 * 119.99968 * 354.88888 * 5 4 3 7 7 C 1.38805 * 120.00323 * 174.89143 * 5 4 3 8 8 N 1.31617 * 119.99828 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00218 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47353 * 90.00269 * 9 7 5 11 11 H 1.48501 * 109.47379 * 209.99891 * 9 7 5 12 12 H 1.48498 * 109.47404 * 329.99847 * 9 7 5 13 13 C 1.53037 * 109.46114 * 182.30972 * 3 2 1 14 14 C 1.53193 * 109.31212 * 178.60427 * 13 3 2 15 15 N 1.46920 * 108.76602 * 54.65472 * 14 13 3 16 16 C 1.34778 * 120.63207 * 126.36587 * 15 14 13 17 17 O 1.21487 * 120.00477 * 184.69837 * 16 15 14 18 18 C 1.48308 * 119.99579 * 4.69399 * 16 15 14 19 19 N 1.32893 * 120.14076 * 75.99913 * 18 16 15 20 20 C 1.31844 * 119.99694 * 180.02562 * 19 18 16 21 21 C 1.39006 * 120.28927 * 359.97438 * 20 19 18 22 22 N 1.31840 * 120.29171 * 359.97438 * 21 20 19 23 23 C 1.32897 * 119.99492 * 359.75137 * 22 21 20 24 24 C 1.48301 * 120.14220 * 180.25249 * 23 22 21 25 25 N 1.34772 * 120.00472 * 5.48357 * 24 23 22 26 26 O 1.21498 * 119.99960 * 185.47919 * 24 23 22 27 27 C 1.46927 * 118.73714 * 306.38243 * 15 14 13 28 28 C 1.53039 * 109.45790 * 62.25458 * 3 2 1 29 29 H 1.09004 * 109.46945 * 64.16496 * 1 2 3 30 30 H 1.09000 * 109.47150 * 184.16248 * 1 2 3 31 31 H 1.08995 * 109.47554 * 304.16783 * 1 2 3 32 32 H 1.08994 * 109.47211 * 239.99966 * 2 1 3 33 33 H 1.09007 * 109.46671 * 119.99828 * 2 1 3 34 34 H 0.97000 * 119.99761 * 124.29086 * 4 3 2 35 35 H 0.97004 * 120.00573 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.49415 * 298.56629 * 13 3 2 37 37 H 1.08999 * 109.49459 * 58.65971 * 13 3 2 38 38 H 1.09002 * 109.59252 * 294.86234 * 14 13 3 39 39 H 1.08998 * 109.58521 * 174.43680 * 14 13 3 40 40 H 1.07993 * 119.85759 * 179.97438 * 20 19 18 41 41 H 1.07998 * 119.85416 * 180.02562 * 21 20 19 42 42 H 0.97007 * 119.99883 * 359.97438 * 25 24 23 43 43 H 0.97002 * 120.00584 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.58999 * 293.82259 * 27 15 14 45 45 H 1.09005 * 109.58529 * 173.39849 * 27 15 14 46 46 H 1.09003 * 109.50310 * 301.33925 * 28 3 2 47 47 H 1.09004 * 109.50080 * 61.43531 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5072 2.1486 -1.1678 5 6 1.7169 1.6482 -2.4250 6 1 2.3440 0.7797 -2.5629 7 6 1.1238 2.2571 -3.5223 8 7 0.3593 3.3152 -3.3543 9 14 1.4106 1.5749 -5.2374 10 1 0.3686 0.5636 -5.5486 11 1 1.3398 2.6792 -6.2278 12 1 2.7513 0.9394 -5.2997 13 6 3.5693 1.4426 -0.0582 14 6 4.0749 2.8883 -0.0932 15 7 3.5150 3.6128 1.0558 16 6 4.3210 4.2756 1.9087 17 8 3.8558 4.7990 2.9015 18 6 5.7758 4.3660 1.6353 19 7 6.2295 5.1998 0.7053 20 6 7.5234 5.2775 0.4642 21 6 8.4183 4.4904 1.1797 22 7 7.9808 3.6600 2.1055 23 6 6.6794 3.5765 2.3617 24 6 6.1842 2.6476 3.4063 25 7 7.0593 1.9681 4.1737 26 8 4.9895 2.4993 3.5705 27 6 2.0597 3.6007 1.2574 28 6 1.5767 2.1471 1.2771 29 1 -0.3633 0.4479 -0.9250 30 1 -0.3633 -1.0249 0.0746 31 1 -0.3634 0.5771 0.8502 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.0057 2.9706 -1.0504 35 1 -0.0549 3.7411 -4.1212 36 1 3.9669 0.9392 0.8232 37 1 3.8992 0.9200 -0.9560 38 1 3.7529 3.3658 -1.0186 39 1 5.1633 2.8962 -0.0350 40 1 7.8896 5.9556 -0.2923 41 1 9.4768 4.5600 0.9767 42 1 8.0131 2.0863 4.0425 43 1 6.7354 1.3603 4.8568 44 1 1.5733 4.1364 0.4422 45 1 1.8184 4.0788 2.2069 46 1 0.4881 2.1261 1.3298 47 1 1.9932 1.6370 2.1457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281049986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:27 Heat of formation + Delta-G solvation = 0.368270 kcal Electronic energy + Delta-G solvation = -32463.667014 eV Core-core repulsion = 28261.295860 eV Total energy + Delta-G solvation = -4202.371154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81391 -39.68127 -39.22813 -37.85178 -35.01613 -34.68237 -33.66486 -32.59315 -32.18217 -30.65212 -30.07321 -28.99776 -26.13251 -25.89567 -24.63673 -23.74610 -22.71250 -21.67647 -21.58191 -20.00317 -18.55186 -18.38483 -18.31697 -17.23286 -17.01002 -16.66790 -16.22401 -15.64952 -15.41013 -14.95191 -14.78556 -14.44899 -14.20286 -14.00079 -13.93893 -13.78643 -13.60107 -13.24520 -13.06531 -12.67212 -12.23252 -12.15615 -12.13830 -11.67772 -11.48781 -11.19694 -11.05709 -10.88322 -10.71293 -10.64742 -10.60649 -10.25536 -10.21116 -10.15640 -9.95604 -9.92011 -9.75529 -9.60424 -9.40074 -9.30042 -8.85388 -8.14841 -6.90725 -5.74302 -3.02232 -0.07694 0.53267 2.43558 2.67602 2.87620 3.07927 3.36004 3.42679 3.48227 3.50115 3.61229 4.01913 4.03363 4.43087 4.60008 4.70815 4.77654 4.86223 5.22928 5.42025 5.43799 5.57972 5.65741 5.72541 5.81026 5.84446 6.03506 6.05177 6.20326 6.21206 6.27660 6.31965 6.46378 6.51708 6.57321 6.60699 6.62613 6.71946 6.84035 6.93278 6.96093 7.02051 7.12878 7.22266 7.27007 7.72499 7.74184 7.93701 8.35379 8.44312 9.55810 10.13347 10.49684 11.48040 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003850 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.817211 B = 7271.440926 C = 8230.102224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.203 3.797 4 N -0.713 5.713 5 C -0.228 4.228 6 H 0.068 0.932 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.899 3.101 10 H -0.292 1.292 11 H -0.294 1.294 12 H -0.284 1.284 13 C -0.135 4.135 14 C 0.126 3.874 15 N -0.578 5.578 16 C 0.590 3.410 17 O -0.524 6.524 18 C 0.117 3.883 19 N -0.409 5.409 20 C 0.082 3.918 21 C 0.055 3.945 22 N -0.411 5.411 23 C 0.051 3.949 24 C 0.573 3.427 25 N -0.834 5.834 26 O -0.494 6.494 27 C 0.121 3.879 28 C -0.130 4.130 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.409 0.591 43 H 0.408 0.592 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.274 -0.658 11.575 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.112 3.888 4 N -0.355 5.355 5 C -0.359 4.359 6 H 0.086 0.914 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.730 3.270 10 H -0.219 1.219 11 H -0.220 1.220 12 H -0.210 1.210 13 C -0.176 4.176 14 C 0.004 3.996 15 N -0.309 5.309 16 C 0.373 3.627 17 O -0.400 6.400 18 C -0.025 4.025 19 N -0.125 5.125 20 C -0.081 4.081 21 C -0.108 4.108 22 N -0.128 5.128 23 C -0.090 4.090 24 C 0.354 3.646 25 N -0.399 5.399 26 O -0.366 6.366 27 C 0.000 4.000 28 C -0.169 4.169 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.202 0.798 41 H 0.201 0.799 42 H 0.239 0.761 43 H 0.240 0.760 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.133 -0.474 11.951 20.083 hybrid contribution 0.750 -0.318 -1.067 1.342 sum 16.882 -0.792 10.884 20.102 Atomic orbital electron populations 1.21654 0.95999 0.99223 1.02801 1.21829 0.96450 0.97740 0.99879 1.19516 0.90462 0.91418 0.87422 1.42479 1.64829 1.27751 1.00393 1.19072 1.23444 1.09642 0.83776 0.91387 1.24670 1.00100 0.98383 0.97518 1.69649 1.36352 1.22467 1.29404 0.86322 0.77523 0.77804 0.85303 1.21928 1.22012 1.21009 1.22332 0.99447 0.94874 1.00912 1.21607 0.95389 0.93463 0.89162 1.47783 1.07333 1.49633 1.26196 1.17232 0.83198 0.79316 0.82905 1.90758 1.74256 1.48313 1.26684 1.22282 0.97254 0.91718 0.91267 1.68721 1.16070 1.15532 1.12160 1.24270 0.88882 0.97057 0.97884 1.24037 1.02491 0.92249 0.92007 1.68340 1.13544 1.16682 1.14228 1.22056 0.90158 0.98355 0.98465 1.17600 0.86130 0.80021 0.80883 1.43505 1.10700 1.46865 1.38851 1.90973 1.14566 1.63212 1.67873 1.21629 0.77985 0.97795 1.02630 1.22137 1.01327 0.95130 0.98271 0.90679 0.94971 0.93847 0.92184 0.94197 0.78121 0.93647 0.93286 0.90883 0.88933 0.93371 0.79782 0.79930 0.76116 0.75994 0.90303 0.89652 0.90329 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.47 37.16 0.35 -2.17 16 2 C -0.12 -2.17 4.70 -26.73 -0.13 -2.30 16 3 C 0.20 3.84 0.44 -131.78 -0.06 3.79 16 4 N -0.71 -16.09 3.42 -47.19 -0.16 -16.25 16 5 C -0.23 -5.76 8.47 -15.06 -0.13 -5.88 16 6 H 0.07 1.70 6.74 -52.48 -0.35 1.35 16 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 9 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.14 -2.43 4.77 -26.61 -0.13 -2.56 16 14 C 0.13 2.27 6.07 -3.71 -0.02 2.25 16 15 N -0.58 -10.65 2.97 -173.71 -0.52 -11.17 16 16 C 0.59 11.15 5.10 -12.12 -0.06 11.09 16 17 O -0.52 -11.27 15.77 -13.38 -0.21 -11.48 16 18 C 0.12 1.86 4.51 -82.50 -0.37 1.48 16 19 N -0.41 -5.71 10.41 -9.31 -0.10 -5.80 16 20 C 0.08 0.73 11.23 -17.26 -0.19 0.53 16 21 C 0.06 0.41 11.23 -17.26 -0.19 0.22 16 22 N -0.41 -4.17 9.73 -9.31 -0.09 -4.27 16 23 C 0.05 0.69 6.78 -82.51 -0.56 0.13 16 24 C 0.57 7.90 8.06 -12.12 -0.10 7.80 16 25 N -0.83 -7.34 8.86 30.63 0.27 -7.06 16 26 O -0.49 -8.74 14.71 -13.39 -0.20 -8.93 16 27 C 0.12 2.22 6.17 -3.71 -0.02 2.20 16 28 C -0.13 -2.29 4.71 -26.61 -0.13 -2.42 16 29 H 0.07 1.60 7.48 -51.93 -0.39 1.21 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.73 6.25 -51.93 -0.32 0.41 16 32 H 0.06 1.16 7.23 -51.93 -0.38 0.79 16 33 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 34 H 0.38 9.46 6.35 -40.82 -0.26 9.20 16 35 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.36 7.46 -51.93 -0.39 0.97 16 38 H 0.09 1.89 7.74 -51.93 -0.40 1.49 16 39 H 0.05 0.80 6.35 -51.93 -0.33 0.47 16 40 H 0.19 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.41 2.67 8.20 -40.82 -0.33 2.33 16 43 H 0.41 2.87 8.93 -40.82 -0.36 2.50 16 44 H 0.08 1.53 6.86 -51.93 -0.36 1.17 16 45 H 0.09 1.57 7.00 -51.93 -0.36 1.21 16 46 H 0.08 1.34 6.33 -51.93 -0.33 1.02 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -34.04 376.91 -7.69 -41.73 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.24 Total: 13.17 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -1.83 Total: 13.78 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: 0.13 Total: -70.60 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.41 Total: -20.42 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.04 -7.69 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281049986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.099 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds