Wall clock time and date at job start Wed Apr 1 2020 04:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47288 * 2 1 4 4 N 1.46502 * 109.45986 * 302.28421 * 3 2 1 5 5 C 1.36932 * 119.99985 * 304.29162 * 4 3 2 6 6 H 1.08004 * 119.99968 * 354.88888 * 5 4 3 7 7 C 1.38805 * 120.00323 * 174.89143 * 5 4 3 8 8 N 1.31617 * 119.99828 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00218 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47353 * 90.00269 * 9 7 5 11 11 H 1.48501 * 109.47379 * 209.99891 * 9 7 5 12 12 H 1.48498 * 109.47404 * 329.99847 * 9 7 5 13 13 C 1.53037 * 109.46114 * 182.30972 * 3 2 1 14 14 C 1.53193 * 109.31212 * 178.60427 * 13 3 2 15 15 N 1.46920 * 108.76602 * 54.65472 * 14 13 3 16 16 C 1.34778 * 120.63207 * 126.36587 * 15 14 13 17 17 O 1.21487 * 120.00477 * 184.69837 * 16 15 14 18 18 C 1.48308 * 119.99579 * 4.69399 * 16 15 14 19 19 N 1.32893 * 120.14076 * 75.99913 * 18 16 15 20 20 C 1.31844 * 119.99694 * 180.02562 * 19 18 16 21 21 C 1.39006 * 120.28927 * 359.97438 * 20 19 18 22 22 N 1.31840 * 120.29171 * 359.97438 * 21 20 19 23 23 C 1.32897 * 119.99492 * 359.75137 * 22 21 20 24 24 C 1.48301 * 120.14220 * 180.25249 * 23 22 21 25 25 N 1.34772 * 120.00472 * 5.48357 * 24 23 22 26 26 O 1.21498 * 119.99960 * 185.47919 * 24 23 22 27 27 C 1.46927 * 118.73714 * 306.38243 * 15 14 13 28 28 C 1.53039 * 109.45790 * 62.25458 * 3 2 1 29 29 H 1.09004 * 109.46945 * 64.16496 * 1 2 3 30 30 H 1.09000 * 109.47150 * 184.16248 * 1 2 3 31 31 H 1.08995 * 109.47554 * 304.16783 * 1 2 3 32 32 H 1.08994 * 109.47211 * 239.99966 * 2 1 3 33 33 H 1.09007 * 109.46671 * 119.99828 * 2 1 3 34 34 H 0.97000 * 119.99761 * 124.29086 * 4 3 2 35 35 H 0.97004 * 120.00573 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.49415 * 298.56629 * 13 3 2 37 37 H 1.08999 * 109.49459 * 58.65971 * 13 3 2 38 38 H 1.09002 * 109.59252 * 294.86234 * 14 13 3 39 39 H 1.08998 * 109.58521 * 174.43680 * 14 13 3 40 40 H 1.07993 * 119.85759 * 179.97438 * 20 19 18 41 41 H 1.07998 * 119.85416 * 180.02562 * 21 20 19 42 42 H 0.97007 * 119.99883 * 359.97438 * 25 24 23 43 43 H 0.97002 * 120.00584 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.58999 * 293.82259 * 27 15 14 45 45 H 1.09005 * 109.58529 * 173.39849 * 27 15 14 46 46 H 1.09003 * 109.50310 * 301.33925 * 28 3 2 47 47 H 1.09004 * 109.50080 * 61.43531 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5072 2.1486 -1.1678 5 6 1.7169 1.6482 -2.4250 6 1 2.3440 0.7797 -2.5629 7 6 1.1238 2.2571 -3.5223 8 7 0.3593 3.3152 -3.3543 9 14 1.4106 1.5749 -5.2374 10 1 0.3686 0.5636 -5.5486 11 1 1.3398 2.6792 -6.2278 12 1 2.7513 0.9394 -5.2997 13 6 3.5693 1.4426 -0.0582 14 6 4.0749 2.8883 -0.0932 15 7 3.5150 3.6128 1.0558 16 6 4.3210 4.2756 1.9087 17 8 3.8558 4.7990 2.9015 18 6 5.7758 4.3660 1.6353 19 7 6.2295 5.1998 0.7053 20 6 7.5234 5.2775 0.4642 21 6 8.4183 4.4904 1.1797 22 7 7.9808 3.6600 2.1055 23 6 6.6794 3.5765 2.3617 24 6 6.1842 2.6476 3.4063 25 7 7.0593 1.9681 4.1737 26 8 4.9895 2.4993 3.5705 27 6 2.0597 3.6007 1.2574 28 6 1.5767 2.1471 1.2771 29 1 -0.3633 0.4479 -0.9250 30 1 -0.3633 -1.0249 0.0746 31 1 -0.3634 0.5771 0.8502 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.0057 2.9706 -1.0504 35 1 -0.0549 3.7411 -4.1212 36 1 3.9669 0.9392 0.8232 37 1 3.8992 0.9200 -0.9560 38 1 3.7529 3.3658 -1.0186 39 1 5.1633 2.8962 -0.0350 40 1 7.8896 5.9556 -0.2923 41 1 9.4768 4.5600 0.9767 42 1 8.0131 2.0863 4.0425 43 1 6.7354 1.3603 4.8568 44 1 1.5733 4.1364 0.4422 45 1 1.8184 4.0788 2.2069 46 1 0.4881 2.1261 1.3298 47 1 1.9932 1.6370 2.1457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281049986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:26 Heat of formation + Delta-G solvation = -26.386609 kcal Electronic energy + Delta-G solvation = -32464.827193 eV Core-core repulsion = 28261.295860 eV Total energy + Delta-G solvation = -4203.531333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.75511 -41.07217 -40.23194 -39.36105 -36.31074 -35.86926 -34.56934 -34.42774 -33.17956 -32.13948 -31.58949 -30.77049 -27.28431 -26.76896 -26.03675 -25.60836 -24.18268 -23.01828 -22.57005 -21.36562 -19.89595 -19.39617 -19.23574 -18.93289 -18.62451 -17.63395 -17.39979 -16.56178 -16.47744 -16.43477 -16.03651 -15.86532 -15.58779 -15.47653 -15.35746 -15.16239 -14.93551 -14.59665 -14.35715 -14.27490 -13.95510 -13.60375 -13.06947 -13.00271 -12.87070 -12.80597 -12.65569 -12.56992 -12.29422 -12.17986 -12.13129 -11.81541 -11.75186 -11.59164 -11.44960 -11.33749 -10.96156 -10.85322 -10.77174 -10.59374 -10.34605 -9.66658 -8.84117 -7.81095 -5.06577 -0.95943 -0.28329 1.36602 1.50249 1.51648 1.52428 1.58210 1.74778 2.05912 2.48706 2.63593 2.85204 2.89228 3.21830 3.51740 3.52185 3.77971 3.85225 3.88110 3.90736 4.05941 4.15818 4.21123 4.30056 4.34766 4.52883 4.53958 4.65968 4.72879 4.76444 4.81856 5.01383 5.05903 5.07997 5.13297 5.23069 5.30633 5.36205 5.51983 5.60712 5.65043 5.69847 5.75082 5.82182 6.16581 6.29763 6.40137 6.41602 6.94097 7.11685 7.47821 8.22574 8.48399 9.42395 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003850 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.817211 B = 7271.440926 C = 8230.102224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C 0.198 3.802 4 N -0.715 5.715 5 C -0.205 4.205 6 H 0.074 0.926 7 C -0.072 4.072 8 N -0.968 5.968 9 Si 0.954 3.046 10 H -0.296 1.296 11 H -0.304 1.304 12 H -0.271 1.271 13 C -0.127 4.127 14 C 0.139 3.861 15 N -0.581 5.581 16 C 0.587 3.413 17 O -0.563 6.563 18 C 0.081 3.919 19 N -0.445 5.445 20 C 0.090 3.910 21 C 0.084 3.916 22 N -0.408 5.408 23 C 0.041 3.959 24 C 0.565 3.435 25 N -0.807 5.807 26 O -0.545 6.545 27 C 0.123 3.877 28 C -0.118 4.118 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.372 0.628 35 H 0.244 0.756 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.229 0.771 41 H 0.243 0.757 42 H 0.423 0.577 43 H 0.418 0.582 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.098 -1.794 11.853 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 C 0.108 3.892 4 N -0.355 5.355 5 C -0.337 4.337 6 H 0.092 0.908 7 C -0.264 4.264 8 N -0.620 5.620 9 Si 0.785 3.215 10 H -0.224 1.224 11 H -0.232 1.232 12 H -0.196 1.196 13 C -0.167 4.167 14 C 0.017 3.983 15 N -0.312 5.312 16 C 0.373 3.627 17 O -0.442 6.442 18 C -0.059 4.059 19 N -0.161 5.161 20 C -0.074 4.074 21 C -0.080 4.080 22 N -0.125 5.125 23 C -0.098 4.098 24 C 0.346 3.654 25 N -0.372 5.372 26 O -0.421 6.421 27 C 0.001 3.999 28 C -0.156 4.156 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.205 0.795 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.246 0.754 41 H 0.259 0.741 42 H 0.255 0.745 43 H 0.251 0.749 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.015 -1.694 12.288 23.547 hybrid contribution -0.193 0.085 -1.102 1.122 sum 19.822 -1.609 11.186 22.817 Atomic orbital electron populations 1.21564 0.95913 1.00348 1.01193 1.21786 0.96448 0.96753 1.00510 1.19742 0.91039 0.91868 0.86519 1.42561 1.64587 1.27500 1.00866 1.19331 1.21286 1.08461 0.84607 0.90828 1.25281 1.01236 0.99281 1.00572 1.69802 1.38450 1.24254 1.29477 0.85417 0.77723 0.76643 0.81676 1.22352 1.23179 1.19589 1.22233 0.98389 0.94889 1.01217 1.21402 0.96261 0.92964 0.87716 1.47817 1.07196 1.49837 1.26351 1.17765 0.84879 0.78002 0.82038 1.90702 1.75688 1.49631 1.28174 1.21739 0.95485 0.94648 0.94019 1.68631 1.19057 1.15922 1.12502 1.25149 0.87155 0.97028 0.98035 1.25057 1.04753 0.89144 0.89094 1.68478 1.11303 1.17520 1.15177 1.21906 0.91139 0.98372 0.98395 1.17850 0.85944 0.80290 0.81355 1.43320 1.10898 1.45387 1.37606 1.90940 1.16616 1.65051 1.69505 1.21505 0.78611 0.98183 1.01600 1.22026 1.01543 0.94351 0.97722 0.94412 0.92880 0.92885 0.93292 0.91689 0.79527 0.94662 0.92040 0.91243 0.91891 0.91764 0.75425 0.74145 0.74501 0.74856 0.92035 0.90138 0.89914 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.47 71.98 0.68 -4.01 16 2 C -0.12 -4.05 4.70 30.60 0.14 -3.91 16 3 C 0.20 7.48 0.44 3.63 0.00 7.48 16 4 N -0.71 -32.97 3.42 -303.23 -1.04 -34.01 16 5 C -0.20 -10.42 8.47 84.03 0.71 -9.71 16 6 H 0.07 3.64 6.74 -2.91 -0.02 3.62 16 7 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 8 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 9 Si 0.95 45.17 29.55 68.60 2.03 47.20 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 C -0.13 -4.50 4.77 30.67 0.15 -4.35 16 14 C 0.14 5.07 6.07 86.36 0.52 5.59 16 15 N -0.58 -22.16 2.97 -821.80 -2.44 -24.61 16 16 C 0.59 22.99 5.10 86.92 0.44 23.43 16 17 O -0.56 -25.48 15.77 14.26 0.22 -25.25 16 18 C 0.08 2.55 4.51 42.16 0.19 2.74 16 19 N -0.44 -11.85 10.41 -183.37 -1.91 -13.76 16 20 C 0.09 1.25 11.23 84.88 0.95 2.20 16 21 C 0.08 0.82 11.23 84.88 0.95 1.77 16 22 N -0.41 -6.85 9.73 -183.38 -1.78 -8.63 16 23 C 0.04 1.05 6.78 42.16 0.29 1.34 16 24 C 0.56 15.19 8.06 86.92 0.70 15.89 16 25 N -0.81 -12.76 8.86 -175.30 -1.55 -14.31 16 26 O -0.54 -19.59 14.71 14.23 0.21 -19.38 16 27 C 0.12 4.74 6.17 86.36 0.53 5.27 16 28 C -0.12 -4.20 4.71 30.67 0.14 -4.05 16 29 H 0.04 1.61 7.48 -2.38 -0.02 1.59 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.74 6.25 -2.39 -0.01 1.73 16 32 H 0.05 1.82 7.23 -2.39 -0.02 1.81 16 33 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.37 19.07 6.35 -92.71 -0.59 18.48 16 35 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.07 2.51 7.46 -2.39 -0.02 2.49 16 38 H 0.06 2.66 7.74 -2.39 -0.02 2.64 16 39 H 0.06 2.12 6.35 -2.39 -0.02 2.11 16 40 H 0.23 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.24 -0.51 8.06 -2.91 -0.02 -0.53 16 42 H 0.42 4.37 8.20 -92.70 -0.76 3.61 16 43 H 0.42 5.19 8.93 -92.71 -0.83 4.36 16 44 H 0.06 2.55 6.86 -2.39 -0.02 2.54 16 45 H 0.08 3.15 7.00 -2.38 -0.02 3.14 16 46 H 0.08 2.85 6.33 -2.39 -0.02 2.84 16 47 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -79.40 376.91 -0.22 -79.62 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -1.12 Total: 34.24 kcal Atomic # 6 Polarization: 29.33 SS G_CDS: 6.88 Total: 36.21 kcal Atomic # 7 Polarization: -144.19 SS G_CDS: -8.44 Total: -152.64 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: 0.43 Total: -44.63 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -79.40 -0.22 -79.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281049986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.237 kcal (2) G-P(sol) polarization free energy of solvation -79.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds