Wall clock time and date at job start Wed Apr 1 2020 04:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 C 1.53006 * 109.46758 * 240.00087 * 2 1 3 5 5 C 1.52993 * 109.47252 * 120.00399 * 2 1 3 6 6 H 1.08998 * 109.47226 * 299.99885 * 5 2 1 7 7 C 1.53002 * 109.47350 * 179.97438 * 5 2 1 8 8 N 1.46496 * 109.47429 * 184.99732 * 7 5 2 9 9 C 1.36935 * 119.99889 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00308 * 359.97438 * 9 8 7 11 11 C 1.38820 * 119.99660 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00032 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99740 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47350 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47177 * 119.99985 * 13 11 9 16 16 H 1.48498 * 109.47034 * 239.99791 * 13 11 9 17 17 N 1.46509 * 109.47501 * 59.99724 * 5 2 1 18 18 C 1.34774 * 119.99673 * 275.00152 * 17 5 2 19 19 O 1.21681 * 120.00384 * 359.97438 * 18 17 5 20 20 C 1.46825 * 119.99452 * 179.97438 * 18 17 5 21 21 C 1.41301 * 126.50350 * 359.68619 * 20 18 17 22 22 N 1.30370 * 108.46203 * 180.26233 * 21 20 18 23 23 N 1.39988 * 109.30708 * 0.02562 * 22 21 20 24 24 C 1.35983 * 108.16961 * 0.02562 * 23 22 21 25 25 N 1.37180 * 120.55813 * 179.97438 * 24 23 22 26 26 H 0.96996 * 119.87869 * 179.97438 * 25 24 23 27 27 C 1.36354 * 120.23713 * 0.02562 * 25 24 23 28 28 C 1.35246 * 119.83103 * 359.97438 * 27 25 24 29 29 C 1.34855 * 131.92476 * 179.97438 * 23 22 21 30 30 O 1.21822 * 120.11703 * 0.02562 * 29 23 22 31 31 H 1.08998 * 109.46912 * 299.99523 * 1 2 3 32 32 H 1.08995 * 109.47100 * 59.99951 * 1 2 3 33 33 H 1.09001 * 109.47260 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46617 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47161 * 300.00012 * 3 2 1 36 36 H 1.08998 * 109.46826 * 60.00424 * 3 2 1 37 37 H 1.09001 * 109.47436 * 300.00138 * 4 2 1 38 38 H 1.08998 * 109.46885 * 60.00311 * 4 2 1 39 39 H 1.08999 * 109.47006 * 179.97438 * 4 2 1 40 40 H 1.08999 * 109.46940 * 305.00156 * 7 5 2 41 41 H 1.08998 * 109.46730 * 64.99924 * 7 5 2 42 42 H 0.97006 * 119.99945 * 0.02562 * 8 7 5 43 43 H 0.97007 * 119.99867 * 180.02562 * 12 11 9 44 44 H 0.97002 * 119.99487 * 94.99475 * 17 5 2 45 45 H 1.08001 * 125.76706 * 0.23081 * 21 20 18 46 46 H 1.07999 * 120.08381 * 179.97438 * 27 25 24 47 47 H 1.08003 * 120.15122 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2491 6 1 1.6767 -0.2075 2.1391 7 6 3.5700 -0.7219 1.2488 8 7 4.0584 -1.5141 2.3802 9 6 5.4047 -1.6576 2.5851 10 1 6.1065 -1.1871 1.9125 11 6 5.8673 -2.4088 3.6569 12 7 5.0120 -2.9826 4.4764 13 14 7.7039 -2.6052 3.9361 14 1 8.4465 -1.8679 2.8824 15 1 8.0631 -2.0591 5.2696 16 1 8.0622 -4.0451 3.8781 17 7 1.5517 -2.1026 1.2492 18 6 0.3297 -2.3853 1.7425 19 8 -0.3677 -1.4934 2.1883 20 6 -0.1599 -3.7695 1.7420 21 6 0.5278 -4.9041 1.2558 22 7 -0.2319 -5.9503 1.4230 23 7 -1.4367 -5.5572 2.0176 24 6 -1.3937 -4.2123 2.2139 25 7 -2.4541 -3.5567 2.7863 26 1 -2.4127 -2.5972 2.9220 27 6 -3.5656 -4.2493 3.1659 28 6 -3.6220 -5.5872 2.9766 29 6 -2.5294 -6.2559 2.3870 30 8 -2.5723 -7.4608 2.2124 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2494 38 1 1.6766 -0.2074 -2.1392 39 1 3.1299 -0.7209 -1.2496 40 1 3.9330 -1.1564 0.3174 41 1 3.9337 0.3018 1.3382 42 1 3.4280 -1.9370 2.9842 43 1 5.3353 -3.5072 5.2256 44 1 2.1078 -2.8136 0.8940 45 1 1.5155 -4.9044 0.8190 46 1 -4.3989 -3.7307 3.6167 47 1 -4.5000 -6.1408 3.2750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284630853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:11 Heat of formation + Delta-G solvation = 44.225177 kcal Electronic energy + Delta-G solvation = -31457.272534 eV Core-core repulsion = 27256.803158 eV Total energy + Delta-G solvation = -4200.469376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.87538 -40.06577 -38.97849 -38.20471 -37.27319 -34.45955 -33.40148 -32.90804 -31.69627 -31.08981 -29.72078 -27.75857 -27.15105 -26.73610 -24.66804 -24.45129 -23.49130 -22.61618 -21.49201 -20.57065 -19.17102 -18.65098 -18.37295 -17.64944 -17.17752 -16.86112 -16.76255 -15.92866 -15.72957 -15.48066 -14.73590 -14.12075 -14.06525 -14.01720 -13.93113 -13.74356 -13.68248 -13.51853 -13.46786 -13.21329 -13.12068 -12.70636 -12.20823 -11.98076 -11.82762 -11.41570 -11.27409 -11.21772 -11.12290 -10.84619 -10.75936 -10.67914 -10.55347 -10.24502 -10.22717 -9.94729 -9.76757 -9.74711 -9.72156 -8.92143 -8.68673 -8.22148 -6.96817 -5.80019 -3.09643 0.54695 0.76898 1.68655 2.01142 2.27438 3.04275 3.38453 3.41736 3.47194 3.49489 3.51423 3.85536 4.21941 4.44756 4.51014 4.54774 4.83052 4.92020 4.99072 5.05723 5.12483 5.17204 5.35465 5.52105 5.55239 5.68685 5.76719 5.83079 5.86549 5.89756 6.00769 6.05232 6.07277 6.10163 6.14414 6.28074 6.40697 6.43040 6.44590 6.49330 6.59941 6.67186 6.71407 6.85864 6.92698 7.61425 7.66996 7.81863 8.37619 8.45633 9.49953 10.05773 10.40753 11.42086 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009298 B = 0.003604 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.783607 B = 7768.224643 C = 9857.517816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.152 3.848 6 H 0.088 0.912 7 C 0.141 3.859 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.929 5.929 13 Si 0.905 3.095 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.698 5.698 18 C 0.603 3.397 19 O -0.564 6.564 20 C -0.299 4.299 21 C 0.133 3.867 22 N -0.263 5.263 23 N -0.358 5.358 24 C 0.367 3.633 25 N -0.586 5.586 26 H 0.447 0.553 27 C 0.190 3.810 28 C -0.308 4.308 29 C 0.564 3.436 30 O -0.491 6.491 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.029 0.971 41 H 0.035 0.965 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.404 0.596 45 H 0.208 0.792 46 H 0.190 0.810 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.223 4.052 -7.606 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.200 4.200 5 C 0.047 3.953 6 H 0.106 0.894 7 C 0.013 3.987 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.736 3.264 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.346 5.346 18 C 0.390 3.610 19 O -0.445 6.445 20 C -0.316 4.316 21 C -0.058 4.058 22 N -0.079 5.079 23 N -0.158 5.158 24 C 0.143 3.857 25 N -0.204 5.204 26 H 0.290 0.710 27 C 0.061 3.939 28 C -0.338 4.338 29 C 0.362 3.638 30 O -0.362 6.362 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.239 0.761 45 H 0.225 0.775 46 H 0.207 0.793 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.733 2.568 -7.555 20.362 hybrid contribution 1.251 0.564 0.548 1.477 sum -17.483 3.132 -7.007 19.093 Atomic orbital electron populations 1.21875 0.94160 1.01692 1.00838 1.20897 0.96036 0.95529 0.95306 1.21886 1.01621 0.94902 1.01445 1.21923 1.01572 1.00068 0.96404 1.21292 0.95051 0.81177 0.97758 0.89386 1.21106 0.89197 0.96060 0.92337 1.42361 1.04877 1.60305 1.30064 1.19234 0.83313 1.26098 1.08681 0.91133 1.24731 0.97497 1.00486 0.97940 1.69673 1.32476 1.37931 1.17675 0.86157 0.85266 0.77387 0.77584 1.20561 1.21926 1.21868 1.45618 1.16418 1.10505 1.62053 1.16685 0.81672 0.85546 0.77048 1.90702 1.57238 1.47485 1.49053 1.19580 0.94568 0.96428 1.21068 1.24347 0.99285 0.88047 0.94086 1.77621 0.90449 1.21671 1.18140 1.48076 1.15684 1.05048 1.46956 1.18721 0.89495 0.83957 0.93562 1.41125 1.11717 1.13256 1.54297 0.71009 1.22426 0.88493 0.93231 0.89785 1.21657 1.02125 0.94032 1.15956 1.17142 0.80183 0.87778 0.78722 1.90915 1.79515 1.13507 1.52277 0.92026 0.94134 0.92925 0.91870 0.92947 0.92588 0.92785 0.93256 0.91848 0.95304 0.94700 0.78036 0.93551 0.76130 0.77523 0.79265 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 7.00 37.16 0.26 -1.31 16 2 C -0.08 -0.94 0.62 -154.51 -0.10 -1.03 16 3 C -0.14 -1.62 8.12 37.16 0.30 -1.32 16 4 C -0.14 -1.61 7.97 37.16 0.30 -1.31 16 5 C 0.15 2.28 1.69 -67.93 -0.11 2.16 16 6 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 7 C 0.14 2.51 5.10 -4.04 -0.02 2.49 16 8 N -0.73 -17.06 5.43 -59.91 -0.33 -17.38 16 9 C -0.24 -6.41 9.99 -15.06 -0.15 -6.56 16 10 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 13 Si 0.90 21.86 29.55 -169.99 -5.02 16.84 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 N -0.70 -9.92 3.63 -55.06 -0.20 -10.12 16 18 C 0.60 8.66 6.15 -12.79 -0.08 8.58 16 19 O -0.56 -8.59 12.93 5.21 0.07 -8.53 16 20 C -0.30 -4.05 6.15 -104.86 -0.64 -4.70 16 21 C 0.13 1.79 11.47 -17.01 -0.20 1.59 16 22 N -0.26 -4.18 12.54 30.85 0.39 -3.79 16 23 N -0.36 -5.27 3.79 -13.82 -0.05 -5.33 16 24 C 0.37 4.64 7.78 -153.53 -1.20 3.44 16 25 N -0.59 -4.93 5.39 -11.73 -0.06 -4.99 16 26 H 0.45 3.26 7.78 -40.82 -0.32 2.95 16 27 C 0.19 1.02 11.25 -16.61 -0.19 0.84 16 28 C -0.31 -2.59 9.95 -39.59 -0.39 -2.98 16 29 C 0.56 7.99 7.70 -15.17 -0.12 7.88 16 30 O -0.49 -8.77 17.90 5.08 0.09 -8.68 16 31 H 0.06 0.82 7.53 -51.93 -0.39 0.43 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.68 5.78 -51.93 -0.30 0.38 16 34 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.60 7.60 -51.93 -0.39 0.21 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.74 6.32 -51.93 -0.33 0.42 16 40 H 0.03 0.50 6.17 -51.93 -0.32 0.18 16 41 H 0.04 0.64 6.71 -51.93 -0.35 0.29 16 42 H 0.39 9.68 7.33 -40.82 -0.30 9.38 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.40 5.50 7.54 -40.82 -0.31 5.19 16 45 H 0.21 2.16 7.48 -52.49 -0.39 1.77 16 46 H 0.19 -0.01 8.06 -52.49 -0.42 -0.43 16 47 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -36.05 381.16 -7.30 -43.35 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.22 Total: 12.10 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -2.43 Total: 7.39 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: 0.47 Total: -68.21 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.16 Total: -17.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.05 -7.30 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284630853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.570 kcal (2) G-P(sol) polarization free energy of solvation -36.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds