Wall clock time and date at job start Wed Apr 1 2020 04:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 C 1.53006 * 109.46758 * 240.00087 * 2 1 3 5 5 C 1.52993 * 109.47252 * 120.00399 * 2 1 3 6 6 H 1.08998 * 109.47226 * 299.99885 * 5 2 1 7 7 C 1.53002 * 109.47350 * 179.97438 * 5 2 1 8 8 N 1.46496 * 109.47429 * 184.99732 * 7 5 2 9 9 C 1.36935 * 119.99889 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00308 * 359.97438 * 9 8 7 11 11 C 1.38820 * 119.99660 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00032 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99740 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47350 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47177 * 119.99985 * 13 11 9 16 16 H 1.48498 * 109.47034 * 239.99791 * 13 11 9 17 17 N 1.46509 * 109.47501 * 59.99724 * 5 2 1 18 18 C 1.34774 * 119.99673 * 275.00152 * 17 5 2 19 19 O 1.21681 * 120.00384 * 359.97438 * 18 17 5 20 20 C 1.46825 * 119.99452 * 179.97438 * 18 17 5 21 21 C 1.41301 * 126.50350 * 359.68619 * 20 18 17 22 22 N 1.30370 * 108.46203 * 180.26233 * 21 20 18 23 23 N 1.39988 * 109.30708 * 0.02562 * 22 21 20 24 24 C 1.35983 * 108.16961 * 0.02562 * 23 22 21 25 25 N 1.37180 * 120.55813 * 179.97438 * 24 23 22 26 26 H 0.96996 * 119.87869 * 179.97438 * 25 24 23 27 27 C 1.36354 * 120.23713 * 0.02562 * 25 24 23 28 28 C 1.35246 * 119.83103 * 359.97438 * 27 25 24 29 29 C 1.34855 * 131.92476 * 179.97438 * 23 22 21 30 30 O 1.21822 * 120.11703 * 0.02562 * 29 23 22 31 31 H 1.08998 * 109.46912 * 299.99523 * 1 2 3 32 32 H 1.08995 * 109.47100 * 59.99951 * 1 2 3 33 33 H 1.09001 * 109.47260 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46617 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47161 * 300.00012 * 3 2 1 36 36 H 1.08998 * 109.46826 * 60.00424 * 3 2 1 37 37 H 1.09001 * 109.47436 * 300.00138 * 4 2 1 38 38 H 1.08998 * 109.46885 * 60.00311 * 4 2 1 39 39 H 1.08999 * 109.47006 * 179.97438 * 4 2 1 40 40 H 1.08999 * 109.46940 * 305.00156 * 7 5 2 41 41 H 1.08998 * 109.46730 * 64.99924 * 7 5 2 42 42 H 0.97006 * 119.99945 * 0.02562 * 8 7 5 43 43 H 0.97007 * 119.99867 * 180.02562 * 12 11 9 44 44 H 0.97002 * 119.99487 * 94.99475 * 17 5 2 45 45 H 1.08001 * 125.76706 * 0.23081 * 21 20 18 46 46 H 1.07999 * 120.08381 * 179.97438 * 27 25 24 47 47 H 1.08003 * 120.15122 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2491 6 1 1.6767 -0.2075 2.1391 7 6 3.5700 -0.7219 1.2488 8 7 4.0584 -1.5141 2.3802 9 6 5.4047 -1.6576 2.5851 10 1 6.1065 -1.1871 1.9125 11 6 5.8673 -2.4088 3.6569 12 7 5.0120 -2.9826 4.4764 13 14 7.7039 -2.6052 3.9361 14 1 8.4465 -1.8679 2.8824 15 1 8.0631 -2.0591 5.2696 16 1 8.0622 -4.0451 3.8781 17 7 1.5517 -2.1026 1.2492 18 6 0.3297 -2.3853 1.7425 19 8 -0.3677 -1.4934 2.1883 20 6 -0.1599 -3.7695 1.7420 21 6 0.5278 -4.9041 1.2558 22 7 -0.2319 -5.9503 1.4230 23 7 -1.4367 -5.5572 2.0176 24 6 -1.3937 -4.2123 2.2139 25 7 -2.4541 -3.5567 2.7863 26 1 -2.4127 -2.5972 2.9220 27 6 -3.5656 -4.2493 3.1659 28 6 -3.6220 -5.5872 2.9766 29 6 -2.5294 -6.2559 2.3870 30 8 -2.5723 -7.4608 2.2124 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2494 38 1 1.6766 -0.2074 -2.1392 39 1 3.1299 -0.7209 -1.2496 40 1 3.9330 -1.1564 0.3174 41 1 3.9337 0.3018 1.3382 42 1 3.4280 -1.9370 2.9842 43 1 5.3353 -3.5072 5.2256 44 1 2.1078 -2.8136 0.8940 45 1 1.5155 -4.9044 0.8190 46 1 -4.3989 -3.7307 3.6167 47 1 -4.5000 -6.1408 3.2750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284630853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:10 Heat of formation + Delta-G solvation = 17.900216 kcal Electronic energy + Delta-G solvation = -31458.414070 eV Core-core repulsion = 27256.803158 eV Total energy + Delta-G solvation = -4201.610912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.86013 -41.19952 -40.01938 -39.09833 -38.43173 -36.13648 -34.62692 -33.99146 -32.92620 -32.49997 -30.77795 -29.19833 -28.07556 -27.77036 -25.91518 -25.53109 -24.87280 -23.65922 -22.94242 -21.61666 -20.14286 -19.80841 -19.21307 -19.11867 -18.32266 -17.98343 -17.88384 -17.04276 -16.87276 -16.74704 -16.33031 -15.49527 -15.31992 -15.07244 -14.96077 -14.90660 -14.76266 -14.47082 -14.41256 -14.28266 -14.21630 -14.09184 -13.58915 -12.99672 -12.98624 -12.89434 -12.72577 -12.45941 -12.31171 -12.29266 -12.10398 -11.95945 -11.76152 -11.69777 -11.54721 -11.23199 -11.20931 -10.96548 -10.81497 -10.71288 -9.83736 -9.15368 -8.92992 -7.90443 -5.18091 -0.25709 -0.14791 0.74488 0.96803 1.47165 1.49797 1.50945 1.59952 2.11090 2.26548 2.42300 2.59167 3.05220 3.36497 3.45106 3.67084 3.72442 3.75645 3.88591 3.96065 4.11248 4.22288 4.33308 4.42812 4.46007 4.53422 4.57223 4.73301 4.91777 4.92095 4.98170 4.99041 5.05669 5.14874 5.17640 5.21493 5.24728 5.32873 5.39949 5.52060 5.56601 5.63861 5.68625 5.72880 5.80193 5.87073 6.30741 6.59774 6.68093 7.30920 7.38960 8.14500 8.37100 9.32464 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009298 B = 0.003604 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.783607 B = 7768.224643 C = 9857.517816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.139 4.139 5 C 0.163 3.837 6 H 0.064 0.936 7 C 0.142 3.858 8 N -0.741 5.741 9 C -0.236 4.236 10 H 0.078 0.922 11 C -0.071 4.071 12 N -0.967 5.967 13 Si 0.965 3.035 14 H -0.264 1.264 15 H -0.299 1.299 16 H -0.297 1.297 17 N -0.698 5.698 18 C 0.605 3.395 19 O -0.574 6.574 20 C -0.319 4.319 21 C 0.140 3.860 22 N -0.312 5.312 23 N -0.368 5.368 24 C 0.371 3.629 25 N -0.573 5.573 26 H 0.456 0.544 27 C 0.228 3.772 28 C -0.323 4.323 29 C 0.542 3.458 30 O -0.551 6.551 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.374 0.626 43 H 0.247 0.753 44 H 0.406 0.594 45 H 0.227 0.773 46 H 0.261 0.739 47 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.595 6.244 -8.340 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.197 4.197 5 C 0.058 3.942 6 H 0.082 0.918 7 C 0.016 3.984 8 N -0.384 5.384 9 C -0.368 4.368 10 H 0.096 0.904 11 C -0.264 4.264 12 N -0.618 5.618 13 Si 0.795 3.205 14 H -0.188 1.188 15 H -0.227 1.227 16 H -0.225 1.225 17 N -0.346 5.346 18 C 0.394 3.606 19 O -0.456 6.456 20 C -0.337 4.337 21 C -0.050 4.050 22 N -0.129 5.129 23 N -0.168 5.168 24 C 0.145 3.855 25 N -0.191 5.191 26 H 0.301 0.699 27 C 0.100 3.900 28 C -0.351 4.351 29 C 0.344 3.656 30 O -0.427 6.427 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.207 0.793 43 H 0.056 0.944 44 H 0.241 0.759 45 H 0.243 0.757 46 H 0.277 0.723 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -20.108 4.831 -8.330 22.295 hybrid contribution 1.591 0.021 0.756 1.762 sum -18.517 4.852 -7.573 20.586 Atomic orbital electron populations 1.21767 0.93708 1.01150 1.01041 1.20853 0.96248 0.95817 0.94238 1.21882 1.01302 0.94332 1.02221 1.21893 1.01226 1.00172 0.96370 1.21093 0.93005 0.81711 0.98354 0.91806 1.21252 0.91178 0.95173 0.90814 1.42530 1.03808 1.60785 1.31288 1.19634 0.84854 1.24385 1.07882 0.90372 1.25440 1.01137 1.01357 0.98433 1.69824 1.34054 1.39499 1.18406 0.85191 0.81140 0.76842 0.77293 1.18839 1.22689 1.22496 1.45560 1.16530 1.10286 1.62214 1.16712 0.81513 0.85699 0.76674 1.90683 1.57519 1.47812 1.49600 1.19525 0.95419 0.95972 1.22744 1.24700 0.99674 0.87597 0.93006 1.77552 0.91811 1.23279 1.20287 1.48260 1.15629 1.05950 1.46915 1.18927 0.90308 0.83397 0.92859 1.41456 1.11239 1.13808 1.52588 0.69919 1.23464 0.88127 0.92226 0.86224 1.21910 1.01141 0.95374 1.16710 1.18323 0.80923 0.87744 0.78582 1.90872 1.80558 1.15758 1.55549 0.93286 0.92360 0.93822 0.92336 0.90952 0.93087 0.92796 0.91545 0.92290 0.93891 0.94491 0.79347 0.94384 0.75865 0.75661 0.72304 0.77691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 7.00 71.98 0.50 -2.18 16 2 C -0.07 -1.60 0.62 -52.18 -0.03 -1.63 16 3 C -0.14 -2.92 8.12 71.98 0.58 -2.34 16 4 C -0.14 -2.83 7.97 71.98 0.57 -2.26 16 5 C 0.16 4.80 1.69 44.99 0.08 4.87 16 6 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 7 C 0.14 4.95 5.10 86.38 0.44 5.39 16 8 N -0.74 -34.53 5.43 -343.45 -1.87 -36.40 16 9 C -0.24 -12.37 9.99 84.04 0.84 -11.53 16 10 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 11 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 12 N -0.97 -57.89 13.06 21.65 0.28 -57.60 16 13 Si 0.97 45.15 29.55 68.60 2.03 47.17 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 16 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 17 N -0.70 -19.66 3.63 -446.35 -1.62 -21.28 16 18 C 0.61 17.22 6.15 86.49 0.53 17.75 16 19 O -0.57 -17.05 12.93 -4.29 -0.06 -17.10 16 20 C -0.32 -8.68 6.15 -20.02 -0.12 -8.80 16 21 C 0.14 3.89 11.47 85.66 0.98 4.88 16 22 N -0.31 -10.46 12.54 -56.31 -0.71 -11.17 16 23 N -0.37 -11.14 3.79 -315.76 -1.20 -12.34 16 24 C 0.37 9.17 7.78 132.61 1.03 10.20 16 25 N -0.57 -8.08 5.39 -191.02 -1.03 -9.11 16 26 H 0.46 5.20 7.78 -92.71 -0.72 4.48 16 27 C 0.23 1.49 11.25 83.30 0.94 2.43 16 28 C -0.32 -4.74 9.95 22.26 0.22 -4.52 16 29 C 0.54 15.71 7.70 84.91 0.65 16.36 16 30 O -0.55 -20.91 17.90 -4.74 -0.08 -20.99 16 31 H 0.05 1.22 7.53 -2.39 -0.02 1.21 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 1.06 5.78 -2.39 -0.01 1.04 16 34 H 0.06 1.28 6.55 -2.39 -0.02 1.26 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.10 7.60 -2.39 -0.02 1.08 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.25 6.32 -2.39 -0.02 1.24 16 40 H 0.04 1.42 6.17 -2.39 -0.01 1.41 16 41 H 0.04 1.31 6.71 -2.39 -0.02 1.29 16 42 H 0.37 19.07 7.33 -92.70 -0.68 18.39 16 43 H 0.25 14.57 8.31 -92.70 -0.77 13.79 16 44 H 0.41 11.03 7.54 -92.71 -0.70 10.33 16 45 H 0.23 4.91 7.48 -2.91 -0.02 4.89 16 46 H 0.26 -1.94 8.06 -2.91 -0.02 -1.96 16 47 H 0.21 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -82.91 381.16 2.39 -80.52 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -1.05 Total: 33.15 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 7.69 Total: 25.14 kcal Atomic # 7 Polarization: -141.75 SS G_CDS: -6.14 Total: -147.89 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.14 Total: -38.10 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -82.91 2.39 -80.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284630853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.421 kcal (2) G-P(sol) polarization free energy of solvation -82.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds