Wall clock time and date at job start Wed Apr 1 2020 05:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47439 * 2 1 4 4 N 1.46895 * 109.47240 * 174.89073 * 3 2 1 5 5 C 1.46899 * 110.99734 * 76.02897 * 4 3 2 6 6 C 1.53005 * 109.47158 * 199.54298 * 5 4 3 7 7 N 1.46497 * 109.47163 * 174.88668 * 6 5 4 8 8 C 1.34782 * 119.99639 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00364 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99534 * 179.97438 * 8 7 6 11 11 C 1.53788 * 113.60955 * 179.97438 * 10 8 7 12 12 C 1.53788 * 87.17056 * 139.93908 * 11 10 8 13 13 F 1.39898 * 113.61293 * 89.15692 * 12 11 10 14 14 F 1.39892 * 113.61112 * 220.06031 * 12 11 10 15 15 C 1.53776 * 113.61495 * 277.49038 * 10 8 7 16 16 C 1.46904 * 110.99870 * 199.97476 * 4 3 2 17 17 C 1.50702 * 109.46720 * 66.05255 * 16 4 3 18 18 O 1.21296 * 120.00029 * 359.97438 * 17 16 4 19 19 N 1.34773 * 119.99785 * 179.97438 * 17 16 4 20 20 C 1.37102 * 119.99826 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00211 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99716 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99581 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47043 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46770 * 120.00264 * 24 22 20 27 27 H 1.48501 * 109.46746 * 239.99689 * 24 22 20 28 28 H 1.08999 * 109.47339 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46583 * 299.99536 * 1 2 3 30 30 H 1.08996 * 109.47289 * 59.99832 * 1 2 3 31 31 H 1.09006 * 109.46583 * 240.00463 * 2 1 3 32 32 H 1.09003 * 109.47570 * 120.00446 * 2 1 3 33 33 H 1.08999 * 109.46806 * 54.88658 * 3 2 1 34 34 H 1.08999 * 109.47181 * 294.89374 * 3 2 1 35 35 H 1.08998 * 109.47957 * 79.54035 * 5 4 3 36 36 H 1.08998 * 109.47283 * 319.53806 * 5 4 3 37 37 H 1.09003 * 109.47130 * 54.88444 * 6 5 4 38 38 H 1.08998 * 109.46981 * 294.88670 * 6 5 4 39 39 H 0.97001 * 120.00161 * 359.97438 * 7 6 5 40 40 H 1.08994 * 112.85350 * 48.79957 * 10 8 7 41 41 H 1.09003 * 113.61022 * 254.52503 * 11 10 8 42 42 H 1.08996 * 113.61450 * 25.34899 * 11 10 8 43 43 H 1.09006 * 113.61473 * 334.57214 * 15 10 8 44 44 H 1.09001 * 113.61495 * 105.38631 * 15 10 8 45 45 H 1.08998 * 109.46717 * 186.04776 * 16 4 3 46 46 H 1.08993 * 109.47519 * 306.05177 * 16 4 3 47 47 H 0.96994 * 119.99969 * 359.97438 * 19 17 16 48 48 H 0.96995 * 120.00190 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5038 1.4442 0.1233 5 6 4.1397 1.0744 -1.1482 6 6 5.5752 0.6145 -0.8859 7 7 6.1690 0.1308 -2.1347 8 6 7.4363 -0.3280 -2.1449 9 8 8.0851 -0.3400 -1.1204 10 6 8.0469 -0.8261 -3.4295 11 6 9.4969 -1.3141 -3.2736 12 6 9.1327 -2.4624 -4.2295 13 9 9.3327 -2.1529 -5.5791 14 9 9.6892 -3.6930 -3.8648 15 6 7.6760 -2.2803 -3.7646 16 6 3.9907 2.7472 0.5959 17 6 3.5119 2.9811 2.0056 18 8 2.8316 2.1449 2.5616 19 7 3.8397 4.1194 2.6484 20 6 3.4037 4.3324 3.9306 21 1 2.7979 3.5879 4.4258 22 6 3.7420 5.5058 4.5936 23 7 4.4794 6.4115 3.9913 24 14 3.1485 5.7957 6.3409 25 1 2.3404 4.6331 6.7885 26 1 4.3188 5.9614 7.2400 27 1 2.3143 7.0236 6.3830 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6039 1.9820 0.8407 34 1 1.7534 1.9292 -0.9322 35 1 4.1506 1.9376 -1.8137 36 1 3.5780 0.2643 -1.6132 37 1 5.5703 -0.1899 -0.1504 38 1 6.1609 1.4512 -0.5052 39 1 5.6499 0.1401 -2.9541 40 1 7.9059 -0.1355 -4.2609 41 1 10.2359 -0.6243 -3.6813 42 1 9.7396 -1.6465 -2.2643 43 1 7.4203 -2.8784 -2.8899 44 1 6.9443 -2.3704 -4.5675 45 1 5.0805 2.7567 0.5760 46 1 3.6085 3.5351 -0.0530 47 1 4.3840 4.7879 2.2038 48 1 4.7153 7.2308 4.4539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317537830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:48 Heat of formation + Delta-G solvation = -151.846795 kcal Electronic energy + Delta-G solvation = -30285.166351 eV Core-core repulsion = 25625.505470 eV Total energy + Delta-G solvation = -4659.660881 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.24298 -47.57414 -40.45812 -38.90423 -37.49739 -36.85966 -35.01301 -33.86330 -33.03040 -31.22189 -29.68179 -27.63995 -26.77987 -26.45589 -24.90054 -23.79472 -22.01296 -21.51346 -20.74596 -20.09242 -19.18444 -18.49841 -17.86684 -17.25628 -16.92507 -16.66880 -16.31046 -16.01859 -15.80730 -15.15517 -14.94971 -14.83608 -14.58695 -14.43728 -14.33072 -13.98287 -13.85906 -13.73108 -13.63684 -13.43940 -13.15619 -13.04084 -12.52159 -12.38727 -12.12913 -12.02326 -11.94726 -11.77266 -11.61216 -11.54273 -11.47267 -11.17342 -10.98089 -10.95370 -10.64570 -10.35412 -10.32417 -10.22559 -10.13131 -9.47895 -9.28534 -8.45445 -8.01093 -7.93269 -6.41870 -3.82504 2.24243 2.71116 2.97846 3.16219 3.26944 3.28137 3.34005 3.73280 3.78112 3.86190 3.90472 4.05317 4.23779 4.56094 4.72774 4.77910 4.88155 4.93930 4.94658 5.02173 5.04989 5.19060 5.23597 5.23803 5.32663 5.38669 5.57676 5.59821 5.63602 5.64958 5.83292 5.86590 5.96105 5.97956 6.03851 6.17113 6.25592 6.27272 6.49848 6.53977 7.16549 7.22075 7.32023 7.55417 7.91543 8.06263 8.61298 9.18119 9.54260 10.05654 10.75979 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012709 B = 0.001977 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.598526 B =14160.683673 C =15778.269866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.058 3.942 4 N -0.512 5.512 5 C 0.044 3.956 6 C 0.119 3.881 7 N -0.724 5.724 8 C 0.525 3.475 9 O -0.528 6.528 10 C -0.133 4.133 11 C -0.142 4.142 12 C 0.255 3.745 13 F -0.178 7.178 14 F -0.187 7.187 15 C -0.149 4.149 16 C 0.042 3.958 17 C 0.443 3.557 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.022 0.978 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.400 0.600 40 H 0.127 0.873 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 -13.161 -20.846 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.070 4.070 4 N -0.236 5.236 5 C -0.085 4.085 6 C -0.004 4.004 7 N -0.376 5.376 8 C 0.310 3.690 9 O -0.404 6.404 10 C -0.155 4.155 11 C -0.181 4.181 12 C 0.218 3.782 13 F -0.159 7.159 14 F -0.167 7.167 15 C -0.187 4.187 16 C -0.089 4.089 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.145 0.855 41 H 0.118 0.882 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.121 0.879 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.102 -13.911 -19.294 24.137 hybrid contribution -0.228 1.298 -0.650 1.470 sum 3.874 -12.612 -19.944 23.913 Atomic orbital electron populations 1.21718 0.96084 1.01188 1.01739 1.21426 0.94932 0.96691 1.01943 1.22249 0.86327 0.97604 1.00789 1.61413 1.06603 1.29453 1.26147 1.22258 0.94341 1.00160 0.91719 1.21410 0.93001 1.00505 0.85515 1.45915 1.14071 1.64880 1.12735 1.19985 0.81644 0.77576 0.89784 1.90768 1.61133 1.54380 1.34077 1.22556 0.97275 0.97544 0.98110 1.24010 0.96738 0.95643 1.01680 1.22009 0.95776 0.81948 0.78436 1.93030 1.95946 1.92676 1.34274 1.93032 1.87125 1.45700 1.90877 1.24065 0.95062 0.95409 1.04155 1.21949 1.00860 0.89828 0.96262 1.19690 0.85931 0.83859 0.87663 1.90513 1.42149 1.45068 1.68167 1.41880 1.47040 1.16889 1.14330 1.19739 1.30051 1.03460 0.89419 0.87843 1.25263 0.96935 0.95568 1.00239 1.69613 1.37337 1.09092 1.38270 0.85811 0.78439 0.78370 0.81794 1.19215 1.20736 1.20814 0.93007 0.92288 0.93380 0.93262 0.90695 0.88356 0.95936 0.94297 0.90208 0.90017 0.91074 0.76660 0.85496 0.88150 0.85445 0.86362 0.87865 0.89303 0.93396 0.77538 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.11 -1.46 5.98 -26.73 -0.16 -1.62 16 3 C 0.06 0.86 4.46 -3.83 -0.02 0.85 16 4 N -0.51 -7.80 4.10 -236.08 -0.97 -8.77 16 5 C 0.04 0.48 4.92 -3.82 -0.02 0.46 16 6 C 0.12 1.35 5.71 -4.04 -0.02 1.33 16 7 N -0.72 -5.97 5.56 -60.29 -0.33 -6.31 16 8 C 0.53 5.10 7.35 -10.98 -0.08 5.02 16 9 O -0.53 -7.61 15.90 5.56 0.09 -7.52 16 10 C -0.13 -0.82 4.13 -90.96 -0.38 -1.20 16 11 C -0.14 -1.01 7.19 -25.91 -0.19 -1.19 16 12 C 0.25 1.86 3.28 -25.81 -0.08 1.78 16 13 F -0.18 -1.45 17.38 2.25 0.04 -1.41 16 14 F -0.19 -1.74 17.41 2.25 0.04 -1.70 16 15 C -0.15 -0.80 7.43 -25.81 -0.19 -0.99 16 16 C 0.04 0.72 5.28 -4.97 -0.03 0.70 16 17 C 0.44 10.18 7.29 -10.99 -0.08 10.10 16 18 O -0.58 -15.01 14.12 5.54 0.08 -14.93 16 19 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 20 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.54 6.91 -51.93 -0.36 0.18 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.10 1.85 5.85 -51.93 -0.30 1.54 16 34 H 0.02 0.30 7.99 -51.93 -0.42 -0.12 16 35 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 36 H 0.08 0.74 6.58 -51.93 -0.34 0.39 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.93 6.95 -51.93 -0.36 0.57 16 39 H 0.40 1.97 8.47 -40.82 -0.35 1.62 16 40 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.13 1.07 7.43 -51.93 -0.39 0.68 16 43 H 0.12 0.68 8.09 -51.93 -0.42 0.26 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 1.41 6.71 -51.93 -0.35 1.06 16 46 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -33.26 401.41 -7.82 -41.07 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.33 Total: 9.47 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.12 Total: 5.99 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.64 Total: -53.02 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.17 Total: -22.45 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.26 -7.82 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317537830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.774 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds