Wall clock time and date at job start Wed Apr 1 2020 05:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47439 * 2 1 4 4 N 1.46895 * 109.47240 * 174.89073 * 3 2 1 5 5 C 1.46899 * 110.99734 * 76.02897 * 4 3 2 6 6 C 1.53005 * 109.47158 * 199.54298 * 5 4 3 7 7 N 1.46497 * 109.47163 * 174.88668 * 6 5 4 8 8 C 1.34782 * 119.99639 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00364 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99534 * 179.97438 * 8 7 6 11 11 C 1.53788 * 113.60955 * 179.97438 * 10 8 7 12 12 C 1.53788 * 87.17056 * 139.93908 * 11 10 8 13 13 F 1.39898 * 113.61293 * 89.15692 * 12 11 10 14 14 F 1.39892 * 113.61112 * 220.06031 * 12 11 10 15 15 C 1.53776 * 113.61495 * 277.49038 * 10 8 7 16 16 C 1.46904 * 110.99870 * 199.97476 * 4 3 2 17 17 C 1.50702 * 109.46720 * 66.05255 * 16 4 3 18 18 O 1.21296 * 120.00029 * 359.97438 * 17 16 4 19 19 N 1.34773 * 119.99785 * 179.97438 * 17 16 4 20 20 C 1.37102 * 119.99826 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00211 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99716 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99581 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47043 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46770 * 120.00264 * 24 22 20 27 27 H 1.48501 * 109.46746 * 239.99689 * 24 22 20 28 28 H 1.08999 * 109.47339 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46583 * 299.99536 * 1 2 3 30 30 H 1.08996 * 109.47289 * 59.99832 * 1 2 3 31 31 H 1.09006 * 109.46583 * 240.00463 * 2 1 3 32 32 H 1.09003 * 109.47570 * 120.00446 * 2 1 3 33 33 H 1.08999 * 109.46806 * 54.88658 * 3 2 1 34 34 H 1.08999 * 109.47181 * 294.89374 * 3 2 1 35 35 H 1.08998 * 109.47957 * 79.54035 * 5 4 3 36 36 H 1.08998 * 109.47283 * 319.53806 * 5 4 3 37 37 H 1.09003 * 109.47130 * 54.88444 * 6 5 4 38 38 H 1.08998 * 109.46981 * 294.88670 * 6 5 4 39 39 H 0.97001 * 120.00161 * 359.97438 * 7 6 5 40 40 H 1.08994 * 112.85350 * 48.79957 * 10 8 7 41 41 H 1.09003 * 113.61022 * 254.52503 * 11 10 8 42 42 H 1.08996 * 113.61450 * 25.34899 * 11 10 8 43 43 H 1.09006 * 113.61473 * 334.57214 * 15 10 8 44 44 H 1.09001 * 113.61495 * 105.38631 * 15 10 8 45 45 H 1.08998 * 109.46717 * 186.04776 * 16 4 3 46 46 H 1.08993 * 109.47519 * 306.05177 * 16 4 3 47 47 H 0.96994 * 119.99969 * 359.97438 * 19 17 16 48 48 H 0.96995 * 120.00190 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5038 1.4442 0.1233 5 6 4.1397 1.0744 -1.1482 6 6 5.5752 0.6145 -0.8859 7 7 6.1690 0.1308 -2.1347 8 6 7.4363 -0.3280 -2.1449 9 8 8.0851 -0.3400 -1.1204 10 6 8.0469 -0.8261 -3.4295 11 6 9.4969 -1.3141 -3.2736 12 6 9.1327 -2.4624 -4.2295 13 9 9.3327 -2.1529 -5.5791 14 9 9.6892 -3.6930 -3.8648 15 6 7.6760 -2.2803 -3.7646 16 6 3.9907 2.7472 0.5959 17 6 3.5119 2.9811 2.0056 18 8 2.8316 2.1449 2.5616 19 7 3.8397 4.1194 2.6484 20 6 3.4037 4.3324 3.9306 21 1 2.7979 3.5879 4.4258 22 6 3.7420 5.5058 4.5936 23 7 4.4794 6.4115 3.9913 24 14 3.1485 5.7957 6.3409 25 1 2.3404 4.6331 6.7885 26 1 4.3188 5.9614 7.2400 27 1 2.3143 7.0236 6.3830 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6039 1.9820 0.8407 34 1 1.7534 1.9292 -0.9322 35 1 4.1506 1.9376 -1.8137 36 1 3.5780 0.2643 -1.6132 37 1 5.5703 -0.1899 -0.1504 38 1 6.1609 1.4512 -0.5052 39 1 5.6499 0.1401 -2.9541 40 1 7.9059 -0.1355 -4.2609 41 1 10.2359 -0.6243 -3.6813 42 1 9.7396 -1.6465 -2.2643 43 1 7.4203 -2.8784 -2.8899 44 1 6.9443 -2.3704 -4.5675 45 1 5.0805 2.7567 0.5760 46 1 3.6085 3.5351 -0.0530 47 1 4.3840 4.7879 2.2038 48 1 4.7153 7.2308 4.4539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317537830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:47 Heat of formation + Delta-G solvation = -176.199624 kcal Electronic energy + Delta-G solvation = -30286.222369 eV Core-core repulsion = 25625.505470 eV Total energy + Delta-G solvation = -4660.716899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.84884 -48.19959 -41.21839 -40.45955 -38.58839 -37.85196 -36.05719 -35.73680 -34.10572 -33.22077 -30.70920 -28.99116 -27.26146 -27.18627 -26.64090 -24.94318 -23.03374 -22.27343 -21.80573 -21.00129 -20.70040 -19.85896 -19.16829 -17.98660 -17.77986 -17.53004 -17.23594 -17.05857 -16.81245 -16.54408 -16.20013 -16.00354 -15.81364 -15.60022 -15.33969 -15.07557 -15.03626 -14.64465 -14.63772 -14.47204 -14.22779 -13.81639 -13.64078 -13.56417 -13.43291 -13.07845 -13.05816 -12.83258 -12.71197 -12.54637 -12.46489 -12.40856 -12.39294 -12.16707 -12.09892 -11.73846 -11.52658 -11.45713 -11.32657 -10.97136 -10.24842 -10.12679 -9.98386 -9.21572 -8.46203 -5.94264 1.35833 1.40824 1.50362 1.54869 1.95564 2.07179 2.29048 2.43572 2.74468 2.86643 3.18908 3.20978 3.25655 3.35925 3.45243 3.88086 3.98259 4.06637 4.12748 4.23472 4.29089 4.35465 4.38649 4.43154 4.47089 4.50010 4.55686 4.58993 4.64600 4.66457 4.72738 4.82961 4.98267 4.98772 5.03482 5.08788 5.23473 5.37901 5.41720 5.43976 5.46144 5.91029 6.10235 6.23499 6.53139 6.61604 7.14297 7.22671 7.58131 8.14043 8.71601 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012709 B = 0.001977 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.598526 B =14160.683673 C =15778.269866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C 0.060 3.940 4 N -0.534 5.534 5 C 0.053 3.947 6 C 0.127 3.873 7 N -0.706 5.706 8 C 0.523 3.477 9 O -0.582 6.582 10 C -0.120 4.120 11 C -0.149 4.149 12 C 0.249 3.751 13 F -0.181 7.181 14 F -0.202 7.202 15 C -0.136 4.136 16 C 0.056 3.944 17 C 0.441 3.559 18 O -0.610 6.610 19 N -0.577 5.577 20 C -0.328 4.328 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.270 1.270 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.421 0.579 40 H 0.161 0.839 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.133 0.867 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -13.220 -23.638 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.067 4.067 4 N -0.259 5.259 5 C -0.075 4.075 6 C 0.002 3.998 7 N -0.359 5.359 8 C 0.310 3.690 9 O -0.462 6.462 10 C -0.141 4.141 11 C -0.188 4.188 12 C 0.212 3.788 13 F -0.162 7.162 14 F -0.183 7.183 15 C -0.174 4.174 16 C -0.075 4.075 17 C 0.228 3.772 18 O -0.496 6.496 19 N -0.215 5.215 20 C -0.458 4.458 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.195 1.195 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.259 0.741 40 H 0.178 0.822 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.151 0.849 45 H 0.120 0.880 46 H 0.089 0.911 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.470 -13.969 -22.151 26.416 hybrid contribution -0.017 1.253 0.177 1.265 sum 3.453 -12.716 -21.974 25.622 Atomic orbital electron populations 1.21696 0.95027 1.02185 1.01490 1.21380 0.95837 0.95349 1.01837 1.22159 0.86047 0.98483 1.00005 1.61327 1.07073 1.28289 1.29232 1.22277 0.93476 1.01850 0.89914 1.21127 0.93480 0.98867 0.86337 1.45697 1.13800 1.63815 1.12573 1.20605 0.81544 0.76594 0.90261 1.90756 1.62501 1.56596 1.36332 1.22587 0.95989 0.98571 0.96923 1.24023 0.97959 0.96035 1.00759 1.22200 0.97117 0.81256 0.78178 1.93022 1.96085 1.92632 1.34475 1.93001 1.87544 1.46698 1.91040 1.24048 0.94324 0.94283 1.04762 1.21778 1.01447 0.91847 0.92427 1.20789 0.84278 0.82409 0.89681 1.90490 1.43359 1.45991 1.69763 1.41961 1.47734 1.17872 1.13948 1.19666 1.31286 1.03798 0.91036 0.90369 1.26021 0.96746 0.94900 1.03786 1.69672 1.37635 1.09381 1.39617 0.84896 0.78168 0.78201 0.77232 1.19819 1.19788 1.19527 0.91401 0.94660 0.91489 0.90199 0.93820 0.92965 0.93290 0.91802 0.87647 0.92761 0.93085 0.74139 0.82169 0.87179 0.87348 0.86861 0.84877 0.88011 0.91098 0.77159 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.91 71.98 0.71 -2.47 16 2 C -0.11 -2.62 5.98 30.59 0.18 -2.44 16 3 C 0.06 1.74 4.46 86.30 0.39 2.13 16 4 N -0.53 -15.64 4.10 -900.81 -3.70 -19.34 16 5 C 0.05 0.97 4.92 86.31 0.42 1.40 16 6 C 0.13 2.69 5.71 86.38 0.49 3.18 16 7 N -0.71 -9.77 5.56 -463.05 -2.57 -12.35 16 8 C 0.52 9.35 7.35 87.66 0.64 10.00 16 9 O -0.58 -16.99 15.90 -3.02 -0.05 -17.04 16 10 C -0.12 -1.16 4.13 -11.01 -0.05 -1.21 16 11 C -0.15 -1.96 7.19 31.13 0.22 -1.74 16 12 C 0.25 3.23 3.28 31.19 0.10 3.34 16 13 F -0.18 -2.54 17.38 44.97 0.78 -1.76 16 14 F -0.20 -3.66 17.41 44.97 0.78 -2.87 16 15 C -0.14 -1.09 7.43 31.19 0.23 -0.86 16 16 C 0.06 1.88 5.28 85.56 0.45 2.33 16 17 C 0.44 20.86 7.29 87.66 0.64 21.50 16 18 O -0.61 -33.33 14.12 -3.08 -0.04 -33.38 16 19 N -0.58 -29.79 5.29 -306.97 -1.62 -31.42 16 20 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 24 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.03 0.91 8.14 -2.38 -0.02 0.90 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.48 6.91 -2.38 -0.02 1.46 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 2.01 5.85 -2.39 -0.01 1.99 16 34 H 0.05 1.14 7.99 -2.39 -0.02 1.12 16 35 H 0.06 0.94 8.00 -2.39 -0.02 0.92 16 36 H 0.11 1.45 6.58 -2.39 -0.02 1.44 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.30 6.95 -2.39 -0.02 1.29 16 39 H 0.42 2.30 8.47 -92.71 -0.79 1.51 16 40 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.11 1.88 7.43 -2.39 -0.02 1.86 16 43 H 0.11 1.08 8.09 -2.38 -0.02 1.06 16 44 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.10 3.16 6.71 -2.39 -0.02 3.15 16 46 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 47 H 0.39 19.42 7.90 -92.71 -0.73 18.69 16 48 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -76.98 401.41 1.10 -75.87 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.52 Total: 29.86 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 5.73 Total: 16.86 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -7.61 Total: -113.06 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.09 Total: -50.42 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.56 Total: -4.63 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.98 1.10 -75.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317537830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.327 kcal (2) G-P(sol) polarization free energy of solvation -76.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds