Wall clock time and date at job start Wed Apr 1 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39904 * 109.46640 * 2 1 4 4 F 1.39895 * 109.47517 * 239.99934 * 2 1 3 5 5 C 1.53000 * 109.46886 * 119.99483 * 2 1 3 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 2 1 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 5 2 8 8 O 1.21288 * 120.00038 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00115 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.50044 * 35.00070 * 10 9 7 12 12 C 1.53119 * 109.49794 * 274.91950 * 10 9 7 13 13 C 1.53120 * 109.15510 * 182.40610 * 12 10 9 14 14 C 1.53032 * 109.28315 * 57.65406 * 13 12 10 15 15 N 1.46846 * 109.52458 * 300.82383 * 14 13 12 16 16 C 1.46896 * 111.00301 * 185.83378 * 15 14 13 17 17 C 1.50696 * 109.47552 * 293.95470 * 16 15 14 18 18 O 1.21289 * 119.99695 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00263 * 180.02562 * 17 16 15 20 20 C 1.37106 * 119.99873 * 179.97438 * 19 17 16 21 21 H 1.07993 * 119.99825 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99577 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00566 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99677 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47064 * 90.00505 * 24 22 20 26 26 H 1.48498 * 109.47452 * 210.00399 * 24 22 20 27 27 H 1.48502 * 109.47408 * 330.00923 * 24 22 20 28 28 C 1.46852 * 111.23261 * 61.71694 * 15 14 13 29 29 H 1.09002 * 109.47508 * 300.00087 * 1 2 3 30 30 H 1.09000 * 109.47437 * 60.00685 * 1 2 3 31 31 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 5 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 5 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 36 36 H 0.97003 * 119.99640 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.52815 * 302.30484 * 12 10 9 38 38 H 1.08996 * 109.52607 * 62.44138 * 12 10 9 39 39 H 1.09005 * 109.50270 * 177.59707 * 13 12 10 40 40 H 1.09002 * 109.50272 * 297.71532 * 13 12 10 41 41 H 1.09000 * 109.46037 * 60.83337 * 14 13 12 42 42 H 1.08997 * 109.46512 * 180.80505 * 14 13 12 43 43 H 1.09005 * 109.47048 * 53.95261 * 16 15 14 44 44 H 1.08999 * 109.47192 * 173.95033 * 16 15 14 45 45 H 0.96999 * 120.00183 * 359.97438 * 19 17 16 46 46 H 0.96994 * 120.00229 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.49192 * 178.28660 * 28 15 14 48 48 H 1.08994 * 109.43091 * 58.31948 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7211 1.2493 6 6 3.5699 -0.7206 1.2497 7 6 4.0723 -1.4314 2.4799 8 8 3.2842 -1.8935 3.2776 9 7 5.3974 -1.5538 2.6937 10 6 5.8857 -2.2453 3.8893 11 1 5.2140 -3.0683 4.1335 12 6 5.9380 -1.2627 5.0625 13 6 6.5057 -1.9777 6.2918 14 6 7.8924 -2.5324 5.9582 15 7 7.7887 -3.4673 4.8305 16 6 9.0766 -4.1244 4.5712 17 6 10.0765 -3.1011 4.0978 18 8 9.7483 -1.9388 3.9868 19 7 11.3351 -3.4777 3.7968 20 6 12.2445 -2.5467 3.3656 21 1 11.9525 -1.5117 3.2676 22 6 13.5422 -2.9349 3.0558 23 7 13.8977 -4.1944 3.1755 24 14 14.7812 -1.6667 2.4676 25 1 15.4965 -1.0944 3.6364 26 1 15.7593 -2.3150 1.5576 27 1 14.0728 -0.5822 1.7414 28 6 7.2900 -2.7931 3.6249 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6765 -0.2073 2.1393 33 1 1.6767 -1.7489 1.2494 34 1 3.9337 -1.2342 0.3597 35 1 3.9330 0.3071 1.2498 36 1 6.0277 -1.1839 2.0558 37 1 6.5785 -0.4197 4.8034 38 1 4.9327 -0.9027 5.2813 39 1 6.5854 -1.2720 7.1187 40 1 5.8443 -2.7968 6.5741 41 1 8.5569 -1.7114 5.6893 42 1 8.2934 -3.0545 6.8269 43 1 9.4387 -4.5888 5.4885 44 1 8.9471 -4.8878 3.8041 45 1 11.5975 -4.4073 3.8852 46 1 14.8037 -4.4652 2.9596 47 1 7.2530 -3.5041 2.7995 48 1 7.9577 -1.9713 3.3666 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317935456.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:11 Heat of formation + Delta-G solvation = -186.126410 kcal Electronic energy + Delta-G solvation = -30930.880262 eV Core-core repulsion = 26269.732905 eV Total energy + Delta-G solvation = -4661.147357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.28758 -47.25922 -40.18397 -39.18762 -37.34295 -34.83392 -34.37662 -33.91966 -32.47891 -31.35381 -31.14638 -29.37682 -27.35590 -25.48255 -24.72457 -22.76974 -22.61837 -21.71753 -20.39069 -19.83568 -19.21139 -17.96939 -17.94313 -17.58991 -16.70669 -16.28203 -16.06199 -16.00838 -15.80025 -15.09963 -14.73504 -14.55468 -14.40545 -14.13518 -13.99705 -13.87481 -13.65464 -13.57890 -13.50344 -13.43111 -13.04318 -12.99768 -12.76632 -12.63103 -12.37598 -12.17460 -11.91535 -11.60575 -11.56499 -11.31377 -11.22497 -11.17915 -10.89651 -10.63637 -10.55941 -10.46812 -10.32527 -10.29543 -9.87565 -9.53627 -9.27711 -9.01361 -8.06725 -7.46838 -6.51615 -3.93306 2.54471 2.96937 3.09569 3.19910 3.24851 3.46374 3.75391 3.77930 3.99129 4.06303 4.09062 4.36688 4.56911 4.70101 4.78622 4.91486 5.02869 5.05536 5.12657 5.13893 5.16046 5.20931 5.25641 5.38804 5.39656 5.55446 5.59843 5.70403 5.76041 5.80235 5.91184 5.99219 6.10511 6.11234 6.18573 6.27431 6.34755 6.46845 6.54621 6.69388 7.29430 7.40160 7.44841 7.47532 7.94382 8.14728 8.48789 9.06310 9.42388 9.92400 10.64687 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.002107 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.892825 B =13285.187071 C =14683.912829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.285 3.715 3 F -0.201 7.201 4 F -0.201 7.201 5 C -0.143 4.143 6 C -0.149 4.149 7 C 0.518 3.482 8 O -0.545 6.545 9 N -0.721 5.721 10 C 0.151 3.849 11 H 0.089 0.911 12 C -0.126 4.126 13 C -0.109 4.109 14 C 0.039 3.961 15 N -0.510 5.510 16 C 0.042 3.958 17 C 0.405 3.595 18 O -0.595 6.595 19 N -0.554 5.554 20 C -0.303 4.303 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.897 5.897 24 Si 0.930 3.070 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.270 1.270 28 C 0.027 3.973 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.402 0.598 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.393 0.607 46 H 0.273 0.727 47 H 0.066 0.934 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.013 4.175 -2.711 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.248 3.752 3 F -0.183 7.183 4 F -0.182 7.182 5 C -0.181 4.181 6 C -0.189 4.189 7 C 0.304 3.696 8 O -0.423 6.423 9 N -0.371 5.371 10 C 0.047 3.953 11 H 0.107 0.893 12 C -0.165 4.165 13 C -0.147 4.147 14 C -0.089 4.089 15 N -0.233 5.233 16 C -0.090 4.090 17 C 0.191 3.809 18 O -0.483 6.483 19 N -0.189 5.189 20 C -0.433 4.433 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.537 5.537 24 Si 0.757 3.243 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.194 1.194 28 C -0.101 4.101 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.236 0.764 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.227 0.773 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.912 4.146 -2.148 23.383 hybrid contribution 2.025 0.804 -0.946 2.375 sum -20.887 4.950 -3.094 21.687 Atomic orbital electron populations 1.22758 0.91434 1.05602 1.05376 1.21200 0.93951 0.75740 0.84269 1.93017 1.90574 1.37788 1.96886 1.93016 1.90562 1.80931 1.53726 1.22371 0.95759 1.03551 0.96402 1.21651 0.96069 1.03127 0.98022 1.20387 0.82432 0.79617 0.87118 1.90698 1.55261 1.48896 1.47395 1.46060 1.06893 1.58383 1.25804 1.20946 0.96013 0.94621 0.83761 0.89268 1.21907 1.00910 0.98506 0.95173 1.21483 0.96761 0.99598 0.96871 1.22274 0.96928 0.96436 0.93232 1.62320 1.24354 1.31157 1.05441 1.22043 0.88172 0.96465 1.02275 1.21090 0.84247 0.90206 0.85403 1.90374 1.78340 1.19715 1.59864 1.42066 1.08951 1.11257 1.56637 1.19702 0.90343 0.92400 1.40871 0.87960 1.25301 0.98191 0.96913 0.97403 1.69604 1.20304 1.15507 1.48296 0.85862 0.79767 0.80043 0.78643 1.20338 1.20823 1.19427 1.22570 0.94364 1.00365 0.92788 0.89127 0.90037 0.89113 0.87964 0.87920 0.88007 0.88034 0.76366 0.91773 0.92015 0.91633 0.91571 0.91269 0.91528 0.89150 0.89254 0.77335 0.91698 0.91546 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.00 9.38 37.16 0.35 -0.65 16 2 C 0.28 2.22 2.11 -26.73 -0.06 2.16 16 3 F -0.20 -1.91 16.54 2.25 0.04 -1.87 16 4 F -0.20 -1.91 16.54 2.25 0.04 -1.87 16 5 C -0.14 -1.13 4.09 -26.73 -0.11 -1.24 16 6 C -0.15 -1.30 5.46 -27.89 -0.15 -1.46 16 7 C 0.52 6.17 7.80 -10.99 -0.09 6.09 16 8 O -0.54 -8.20 15.65 5.55 0.09 -8.11 16 9 N -0.72 -8.58 5.08 -53.73 -0.27 -8.85 16 10 C 0.15 2.11 2.62 -67.85 -0.18 1.93 16 11 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 12 C -0.13 -1.74 5.58 -26.61 -0.15 -1.89 16 13 C -0.11 -1.46 6.09 -26.65 -0.16 -1.62 16 14 C 0.04 0.62 5.10 -3.84 -0.02 0.60 16 15 N -0.51 -8.20 4.86 -236.12 -1.15 -9.35 16 16 C 0.04 0.72 5.86 -4.98 -0.03 0.69 16 17 C 0.40 8.84 7.20 -10.99 -0.08 8.76 16 18 O -0.60 -14.38 11.20 5.55 0.06 -14.32 16 19 N -0.55 -13.36 5.29 -10.97 -0.06 -13.42 16 20 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 21 H 0.10 2.87 7.16 -52.49 -0.38 2.50 16 22 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 23 N -0.90 -23.72 13.05 55.50 0.72 -22.99 16 24 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 C 0.03 0.43 4.45 -3.83 -0.02 0.41 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.10 0.81 7.80 -51.93 -0.41 0.40 16 35 H 0.10 0.81 7.80 -51.93 -0.41 0.40 16 36 H 0.40 4.14 8.60 -40.82 -0.35 3.79 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.31 6.00 -51.93 -0.31 1.00 16 42 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 43 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 47 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 48 H 0.09 1.69 5.36 -51.93 -0.28 1.42 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -30.92 392.08 -8.03 -38.96 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -7.46 Total: 14.43 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.93 Total: 6.05 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.75 Total: -54.61 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.15 Total: -22.43 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.07 Total: -3.75 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.92 -8.03 -38.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317935456.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.171 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds