Wall clock time and date at job start Wed Apr 1 2020 04:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39904 * 109.46640 * 2 1 4 4 F 1.39895 * 109.47517 * 239.99934 * 2 1 3 5 5 C 1.53000 * 109.46886 * 119.99483 * 2 1 3 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 2 1 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 5 2 8 8 O 1.21288 * 120.00038 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00115 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.50044 * 35.00070 * 10 9 7 12 12 C 1.53119 * 109.49794 * 274.91950 * 10 9 7 13 13 C 1.53120 * 109.15510 * 182.40610 * 12 10 9 14 14 C 1.53032 * 109.28315 * 57.65406 * 13 12 10 15 15 N 1.46846 * 109.52458 * 300.82383 * 14 13 12 16 16 C 1.46896 * 111.00301 * 185.83378 * 15 14 13 17 17 C 1.50696 * 109.47552 * 293.95470 * 16 15 14 18 18 O 1.21289 * 119.99695 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00263 * 180.02562 * 17 16 15 20 20 C 1.37106 * 119.99873 * 179.97438 * 19 17 16 21 21 H 1.07993 * 119.99825 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99577 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00566 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99677 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47064 * 90.00505 * 24 22 20 26 26 H 1.48498 * 109.47452 * 210.00399 * 24 22 20 27 27 H 1.48502 * 109.47408 * 330.00923 * 24 22 20 28 28 C 1.46852 * 111.23261 * 61.71694 * 15 14 13 29 29 H 1.09002 * 109.47508 * 300.00087 * 1 2 3 30 30 H 1.09000 * 109.47437 * 60.00685 * 1 2 3 31 31 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 5 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 5 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 36 36 H 0.97003 * 119.99640 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.52815 * 302.30484 * 12 10 9 38 38 H 1.08996 * 109.52607 * 62.44138 * 12 10 9 39 39 H 1.09005 * 109.50270 * 177.59707 * 13 12 10 40 40 H 1.09002 * 109.50272 * 297.71532 * 13 12 10 41 41 H 1.09000 * 109.46037 * 60.83337 * 14 13 12 42 42 H 1.08997 * 109.46512 * 180.80505 * 14 13 12 43 43 H 1.09005 * 109.47048 * 53.95261 * 16 15 14 44 44 H 1.08999 * 109.47192 * 173.95033 * 16 15 14 45 45 H 0.96999 * 120.00183 * 359.97438 * 19 17 16 46 46 H 0.96994 * 120.00229 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.49192 * 178.28660 * 28 15 14 48 48 H 1.08994 * 109.43091 * 58.31948 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7211 1.2493 6 6 3.5699 -0.7206 1.2497 7 6 4.0723 -1.4314 2.4799 8 8 3.2842 -1.8935 3.2776 9 7 5.3974 -1.5538 2.6937 10 6 5.8857 -2.2453 3.8893 11 1 5.2140 -3.0683 4.1335 12 6 5.9380 -1.2627 5.0625 13 6 6.5057 -1.9777 6.2918 14 6 7.8924 -2.5324 5.9582 15 7 7.7887 -3.4673 4.8305 16 6 9.0766 -4.1244 4.5712 17 6 10.0765 -3.1011 4.0978 18 8 9.7483 -1.9388 3.9868 19 7 11.3351 -3.4777 3.7968 20 6 12.2445 -2.5467 3.3656 21 1 11.9525 -1.5117 3.2676 22 6 13.5422 -2.9349 3.0558 23 7 13.8977 -4.1944 3.1755 24 14 14.7812 -1.6667 2.4676 25 1 15.4965 -1.0944 3.6364 26 1 15.7593 -2.3150 1.5576 27 1 14.0728 -0.5822 1.7414 28 6 7.2900 -2.7931 3.6249 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6765 -0.2073 2.1393 33 1 1.6767 -1.7489 1.2494 34 1 3.9337 -1.2342 0.3597 35 1 3.9330 0.3071 1.2498 36 1 6.0277 -1.1839 2.0558 37 1 6.5785 -0.4197 4.8034 38 1 4.9327 -0.9027 5.2813 39 1 6.5854 -1.2720 7.1187 40 1 5.8443 -2.7968 6.5741 41 1 8.5569 -1.7114 5.6893 42 1 8.2934 -3.0545 6.8269 43 1 9.4387 -4.5888 5.4885 44 1 8.9471 -4.8878 3.8041 45 1 11.5975 -4.4073 3.8852 46 1 14.8037 -4.4652 2.9596 47 1 7.2530 -3.5041 2.7995 48 1 7.9577 -1.9713 3.3666 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317935456.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:10 Heat of formation + Delta-G solvation = -207.767598 kcal Electronic energy + Delta-G solvation = -30931.818694 eV Core-core repulsion = 26269.732905 eV Total energy + Delta-G solvation = -4662.085789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.95235 -47.93887 -41.37706 -40.57128 -38.81124 -36.20858 -35.55769 -35.11274 -33.73817 -33.25636 -31.84142 -30.43837 -28.86899 -26.51775 -26.21828 -24.11320 -23.68361 -22.43732 -21.41722 -21.24842 -20.74706 -19.80607 -18.61656 -18.47458 -17.80121 -17.58017 -17.05760 -16.93167 -16.72175 -16.60738 -16.17711 -16.00709 -15.67851 -15.64756 -15.10453 -15.06374 -14.84873 -14.53515 -14.35060 -14.29684 -14.16806 -13.91604 -13.69248 -13.47449 -13.34858 -13.28288 -13.11977 -13.01279 -12.84924 -12.54260 -12.44186 -12.26283 -12.23687 -12.14671 -11.88475 -11.81303 -11.77629 -11.51313 -11.35332 -10.95399 -10.90632 -10.08888 -9.99857 -9.02342 -8.46992 -5.96711 1.34986 1.40140 1.51830 1.58489 1.99745 2.02798 2.27545 2.83645 3.05864 3.19139 3.22394 3.24928 3.39351 3.49136 3.73631 3.84483 3.91913 4.04324 4.11262 4.16936 4.18205 4.40228 4.45384 4.50985 4.53807 4.56829 4.63177 4.64854 4.66242 4.74353 4.92962 4.95528 4.96052 4.97633 5.04298 5.05312 5.14848 5.19099 5.37153 5.40547 5.47108 5.88399 6.04132 6.08093 6.49886 6.57765 7.10632 7.18298 7.54441 8.08471 8.68177 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.002107 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.892825 B =13285.187071 C =14683.912829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.281 3.719 3 F -0.213 7.213 4 F -0.212 7.212 5 C -0.140 4.140 6 C -0.144 4.144 7 C 0.520 3.480 8 O -0.576 6.576 9 N -0.718 5.718 10 C 0.161 3.839 11 H 0.081 0.919 12 C -0.121 4.121 13 C -0.102 4.102 14 C 0.040 3.960 15 N -0.502 5.502 16 C 0.050 3.950 17 C 0.409 3.591 18 O -0.618 6.618 19 N -0.569 5.569 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.918 5.918 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.273 1.273 28 C 0.034 3.966 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.410 0.590 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.070 0.930 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.095 4.042 -2.731 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.245 3.755 3 F -0.194 7.194 4 F -0.194 7.194 5 C -0.178 4.178 6 C -0.183 4.183 7 C 0.307 3.693 8 O -0.455 6.455 9 N -0.369 5.369 10 C 0.055 3.945 11 H 0.099 0.901 12 C -0.160 4.160 13 C -0.140 4.140 14 C -0.088 4.088 15 N -0.225 5.225 16 C -0.082 4.082 17 C 0.196 3.804 18 O -0.507 6.507 19 N -0.205 5.205 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.198 1.198 28 C -0.094 4.094 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.246 0.754 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.003 4.015 -2.176 24.434 hybrid contribution 2.281 0.858 -0.913 2.603 sum -21.722 4.873 -3.089 22.475 Atomic orbital electron populations 1.22792 0.89191 1.06713 1.06219 1.21468 0.95505 0.74972 0.83582 1.92995 1.90883 1.38619 1.96893 1.92993 1.90873 1.81130 1.54370 1.22360 0.95009 1.03775 0.96650 1.21666 0.96785 1.03278 0.96608 1.20871 0.81867 0.78990 0.87532 1.90681 1.55891 1.50283 1.48680 1.46037 1.07360 1.58118 1.25417 1.20726 0.94516 0.94547 0.84670 0.90137 1.21855 1.00731 0.98081 0.95346 1.21462 0.95299 1.00141 0.97141 1.22280 0.97780 0.95352 0.93365 1.62412 1.23304 1.31158 1.05620 1.22142 0.86936 0.95404 1.03692 1.22087 0.84157 0.90838 0.83349 1.90388 1.78789 1.21390 1.60089 1.42136 1.09515 1.10979 1.57903 1.19633 0.91683 0.92069 1.42666 0.90272 1.26022 0.99321 0.98757 0.97206 1.69665 1.20860 1.16590 1.48764 0.84970 0.77576 0.77765 0.78298 1.19806 1.19699 1.19765 1.22460 0.94762 0.99353 0.92829 0.87906 0.89625 0.87903 0.87766 0.87732 0.86973 0.87044 0.75439 0.92911 0.91726 0.90031 0.90599 0.94711 0.90343 0.86996 0.87225 0.77042 0.91324 0.91159 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 9.38 71.98 0.68 -0.95 16 2 C 0.28 3.99 2.11 30.59 0.06 4.05 16 3 F -0.21 -3.79 16.54 44.97 0.74 -3.05 16 4 F -0.21 -3.79 16.54 44.97 0.74 -3.04 16 5 C -0.14 -2.03 4.09 30.59 0.13 -1.91 16 6 C -0.14 -2.34 5.46 29.85 0.16 -2.18 16 7 C 0.52 11.89 7.80 87.66 0.68 12.57 16 8 O -0.58 -16.82 15.65 -3.05 -0.05 -16.86 16 9 N -0.72 -16.64 5.08 -442.28 -2.25 -18.88 16 10 C 0.16 4.37 2.62 45.04 0.12 4.49 16 11 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 12 C -0.12 -3.25 5.58 30.67 0.17 -3.08 16 13 C -0.10 -2.60 6.09 30.65 0.19 -2.41 16 14 C 0.04 1.23 5.10 86.32 0.44 1.67 16 15 N -0.50 -15.59 4.86 -900.95 -4.37 -19.96 16 16 C 0.05 1.63 5.86 85.56 0.50 2.13 16 17 C 0.41 17.95 7.20 87.66 0.63 18.58 16 18 O -0.62 -30.57 11.20 -3.06 -0.03 -30.60 16 19 N -0.57 -27.81 5.29 -307.00 -1.62 -29.43 16 20 C -0.33 -18.06 9.68 84.04 0.81 -17.25 16 21 H 0.08 4.61 7.16 -2.91 -0.02 4.58 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 24 Si 0.99 42.01 29.55 68.60 2.03 44.04 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 C 0.03 1.07 4.45 86.32 0.38 1.45 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 33 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16 34 H 0.11 1.62 7.80 -2.39 -0.02 1.60 16 35 H 0.11 1.62 7.80 -2.39 -0.02 1.60 16 36 H 0.41 8.26 8.60 -92.71 -0.80 7.46 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.03 1.33 6.00 -2.39 -0.01 1.31 16 42 H 0.08 2.21 8.06 -2.39 -0.02 2.19 16 43 H 0.11 3.23 8.06 -2.38 -0.02 3.21 16 44 H 0.11 3.19 8.14 -2.39 -0.02 3.18 16 45 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 46 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 47 H 0.07 2.11 8.12 -2.38 -0.02 2.09 16 48 H 0.06 2.35 5.36 -2.39 -0.01 2.34 16 Total: -1.00 -66.79 392.08 0.36 -66.43 By element: Atomic # 1 Polarization: 43.17 SS G_CDS: -0.53 Total: 42.63 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 5.42 Total: 16.97 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -7.96 Total: -116.51 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.08 Total: -47.47 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 1.49 Total: -6.09 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -66.79 0.36 -66.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317935456.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.333 kcal (2) G-P(sol) polarization free energy of solvation -66.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds