Wall clock time and date at job start Wed Apr 1 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46715 * 2 1 4 4 N 1.46900 * 109.47031 * 299.99501 * 3 2 1 5 5 C 1.46901 * 111.00221 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47509 * 180.02562 * 5 4 3 7 7 O 1.21297 * 119.99815 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00376 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99662 * 0.02562 * 9 8 6 11 11 C 1.38945 * 120.00499 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99823 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00510 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46878 * 59.99440 * 13 11 9 15 15 H 1.48493 * 109.47438 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47005 * 300.00098 * 13 11 9 17 17 N 1.46496 * 109.47518 * 240.00094 * 2 1 3 18 18 C 1.34772 * 120.00358 * 183.93387 * 17 2 1 19 19 O 1.21526 * 119.99661 * 5.18957 * 18 17 2 20 20 C 1.48153 * 120.00591 * 185.19330 * 18 17 2 21 21 C 1.39717 * 120.18525 * 179.97438 * 20 18 17 22 22 C 1.38827 * 117.89780 * 180.02562 * 21 20 18 23 23 C 1.38575 * 118.06910 * 359.97438 * 22 21 20 24 24 N 1.32173 * 120.06430 * 359.97438 * 23 22 21 25 25 N 1.28355 * 122.30652 * 359.70887 * 24 23 22 26 26 C 1.52998 * 109.47088 * 119.99229 * 2 1 3 27 27 C 1.53000 * 117.51971 * 348.46466 * 26 2 1 28 28 C 1.52997 * 60.00461 * 107.47381 * 27 26 2 29 29 H 1.08994 * 109.47629 * 300.00170 * 1 2 3 30 30 H 1.09003 * 109.46810 * 60.00788 * 1 2 3 31 31 H 1.08999 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47211 * 59.99574 * 3 2 1 33 33 H 1.08996 * 109.46899 * 179.97438 * 3 2 1 34 34 H 1.00905 * 111.00138 * 56.04513 * 4 3 2 35 35 H 1.09001 * 109.46554 * 300.00175 * 5 4 3 36 36 H 1.08996 * 109.47049 * 59.99602 * 5 4 3 37 37 H 0.97001 * 120.00414 * 0.02562 * 8 6 5 38 38 H 0.97008 * 120.00327 * 179.97438 * 12 11 9 39 39 H 0.97001 * 119.99793 * 3.92144 * 17 2 1 40 40 H 1.07992 * 121.05141 * 359.97438 * 21 20 18 41 41 H 1.07991 * 120.96628 * 180.02562 * 22 21 20 42 42 H 1.07991 * 119.96521 * 180.02562 * 23 22 21 43 43 H 1.08999 * 115.55330 * 202.75455 * 26 2 1 44 44 H 1.08997 * 117.49732 * 214.96791 * 27 26 2 45 45 H 1.09008 * 117.49543 * 359.97438 * 27 26 2 46 46 H 1.08996 * 117.50085 * 252.50958 * 28 27 26 47 47 H 1.08995 * 117.49713 * 107.48726 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5503 2.1350 -1.1995 5 6 2.0217 3.5259 -1.2338 6 6 1.5001 4.2027 -2.4751 7 8 0.8045 3.5867 -3.2549 8 7 1.8065 5.4922 -2.7189 9 6 1.3325 6.1078 -3.8485 10 1 0.7131 5.5593 -4.5428 11 6 1.6488 7.4371 -4.1002 12 7 2.4028 8.1043 -3.2557 13 14 1.0023 8.2761 -5.6389 14 1 -0.4826 8.2567 -5.6264 15 1 1.4783 9.6822 -5.6732 16 1 1.4966 7.5561 -6.8400 17 7 2.0184 -0.6906 -1.1961 18 6 3.3409 -0.8835 -1.3701 19 8 4.1212 -0.5699 -0.4929 20 6 3.8433 -1.4777 -2.6308 21 6 5.2135 -1.6789 -2.8154 22 6 5.6321 -2.2385 -4.0150 23 6 4.6670 -2.5636 -4.9547 24 7 3.3900 -2.3399 -4.6971 25 7 2.9932 -1.8285 -3.5887 26 6 2.0400 -0.7211 1.2493 27 6 1.0222 -1.0408 2.3460 28 6 1.5801 -2.1637 1.4694 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 0.5437 2.0925 -1.2560 35 1 1.6584 4.0544 -0.3524 36 1 3.1115 3.5400 -1.2425 37 1 2.3631 5.9847 -2.0956 38 1 2.6240 9.0323 -3.4315 39 1 1.3899 -1.0091 -1.8628 40 1 5.9246 -1.4069 -2.0495 41 1 6.6794 -2.4161 -4.2098 42 1 4.9584 -3.0009 -5.8982 43 1 3.0517 -0.4621 1.5616 44 1 1.3643 -0.9920 3.3798 45 1 -0.0111 -0.7370 2.1778 46 1 0.9141 -2.5989 0.7245 47 1 2.2893 -2.8538 1.9265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318730703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:06 Heat of formation + Delta-G solvation = 24.708251 kcal Electronic energy + Delta-G solvation = -30528.889901 eV Core-core repulsion = 26327.574208 eV Total energy + Delta-G solvation = -4201.315693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37315 -40.25884 -38.25355 -37.88773 -35.56830 -34.15032 -33.71876 -33.33610 -32.79254 -31.20208 -30.40628 -27.52038 -26.11534 -25.37168 -24.78028 -24.00532 -22.66515 -21.96834 -21.48067 -19.40013 -19.01484 -18.47634 -17.87696 -17.47199 -16.93664 -16.54900 -16.34542 -15.60403 -15.49212 -15.21332 -14.76330 -14.64447 -14.47945 -14.15143 -14.04144 -13.93623 -13.48248 -13.38720 -13.26272 -12.85282 -12.72464 -12.36188 -11.86050 -11.73398 -11.68321 -11.49873 -11.44877 -11.40149 -10.99889 -10.98288 -10.62819 -10.56578 -10.42546 -10.31275 -10.27431 -10.18487 -10.04538 -9.81273 -9.47070 -9.04140 -8.39860 -7.99188 -7.92013 -6.38884 -3.79656 0.26259 0.50828 2.58406 2.86103 3.21904 3.27114 3.31820 3.50341 3.64135 3.81946 3.94818 4.06762 4.18451 4.25983 4.36016 4.42125 4.63200 4.68717 4.72355 4.82601 4.88409 4.93800 5.00935 5.16195 5.26094 5.28559 5.40326 5.45350 5.57550 5.60422 5.62109 5.67012 5.72812 5.81770 5.86733 5.95293 5.97611 6.04493 6.05174 6.18691 6.30365 6.47463 7.25004 7.48007 7.57502 7.72856 8.09167 8.10233 8.35169 8.64631 9.20716 9.57700 10.09487 10.78888 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009198 B = 0.002928 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.273588 B = 9559.274136 C =11676.354392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.212 3.788 3 C 0.051 3.949 4 N -0.664 5.664 5 C 0.052 3.948 6 C 0.442 3.558 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.930 3.070 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.274 1.274 17 N -0.679 5.679 18 C 0.587 3.413 19 O -0.530 6.530 20 C 0.030 3.970 21 C -0.067 4.067 22 C -0.124 4.124 23 C 0.052 3.948 24 N -0.240 5.240 25 N -0.206 5.206 26 C -0.150 4.150 27 C -0.181 4.181 28 C -0.172 4.172 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.346 0.654 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.411 0.589 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.177 0.823 43 H 0.118 0.882 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -21.928 8.227 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.126 3.874 3 C -0.080 4.080 4 N -0.297 5.297 5 C -0.081 4.081 6 C 0.227 3.773 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.329 5.329 18 C 0.370 3.630 19 O -0.406 6.406 20 C -0.116 4.116 21 C -0.097 4.097 22 C -0.153 4.153 23 C -0.111 4.111 24 N -0.083 5.083 25 N -0.053 5.053 26 C -0.170 4.170 27 C -0.219 4.219 28 C -0.209 4.209 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.248 0.752 40 H 0.179 0.821 41 H 0.174 0.826 42 H 0.194 0.806 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.477 -22.184 7.413 23.647 hybrid contribution 0.961 1.241 0.329 1.604 sum 4.438 -20.943 7.742 22.765 Atomic orbital electron populations 1.22258 0.93289 1.03098 1.03830 1.19795 0.93585 0.90910 0.83110 1.22334 1.02010 0.92136 0.91511 1.60045 1.17215 1.14058 1.38411 1.21648 1.00937 0.88699 0.96793 1.19817 0.85943 0.82980 0.88548 1.90521 1.42001 1.64623 1.49466 1.41852 1.46160 1.09406 1.22689 1.19654 1.29116 0.94153 0.99954 0.88012 1.25252 0.96989 0.96580 0.99116 1.69609 1.37089 1.11060 1.36658 0.85924 0.79155 0.77847 0.81330 1.19909 1.20989 1.19907 1.45673 1.06628 1.57177 1.23417 1.17365 0.83018 0.78119 0.84478 1.90738 1.56197 1.51646 1.42006 1.22936 0.92726 0.99252 0.96674 1.22442 0.96054 0.93164 0.98005 1.22450 1.02331 0.97033 0.93466 1.24513 0.90683 0.95361 1.00505 1.73157 1.15910 1.08206 1.11013 1.73241 1.31323 1.04504 0.96227 1.22602 1.00103 0.98004 0.96255 1.23168 0.99277 1.03444 0.95966 1.22830 1.03646 0.91421 1.02994 0.90348 0.90518 0.91502 0.94423 0.89467 0.83333 0.93935 0.89816 0.77491 0.91857 0.75229 0.82082 0.82560 0.80607 0.86365 0.88918 0.88101 0.88950 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 6.89 37.16 0.26 -1.33 16 2 C 0.21 2.40 0.65 -131.82 -0.09 2.31 16 3 C 0.05 0.68 4.52 -3.82 -0.02 0.67 16 4 N -0.66 -11.04 5.93 -115.06 -0.68 -11.72 16 5 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 6 C 0.44 10.73 7.82 -10.99 -0.09 10.65 16 7 O -0.58 -16.10 15.78 5.54 0.09 -16.02 16 8 N -0.56 -14.68 5.29 -10.97 -0.06 -14.74 16 9 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 10 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 13 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 N -0.68 -8.39 4.85 -48.44 -0.23 -8.62 16 18 C 0.59 8.01 7.22 -12.19 -0.09 7.93 16 19 O -0.53 -7.91 13.21 5.34 0.07 -7.84 16 20 C 0.03 0.39 6.83 -82.83 -0.57 -0.17 16 21 C -0.07 -0.68 9.73 -38.81 -0.38 -1.06 16 22 C -0.12 -0.94 10.20 -39.24 -0.40 -1.34 16 23 C 0.05 0.46 11.31 -17.28 -0.20 0.26 16 24 N -0.24 -3.06 11.51 30.58 0.35 -2.71 16 25 N -0.21 -2.85 10.76 33.32 0.36 -2.49 16 26 C -0.15 -1.56 4.05 -90.62 -0.37 -1.93 16 27 C -0.18 -1.51 9.61 -26.73 -0.26 -1.77 16 28 C -0.17 -1.55 9.81 -26.73 -0.26 -1.81 16 29 H 0.08 0.66 6.84 -51.93 -0.36 0.30 16 30 H 0.08 0.82 6.57 -51.93 -0.34 0.48 16 31 H 0.07 0.54 7.01 -51.93 -0.36 0.18 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.34 6.64 -51.93 -0.34 0.99 16 34 H 0.35 5.76 6.47 -39.29 -0.25 5.51 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.41 4.95 7.85 -40.82 -0.32 4.63 16 40 H 0.16 1.41 7.72 -52.49 -0.41 1.01 16 41 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 1.44 7.17 -51.93 -0.37 1.06 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.76 5.87 -51.92 -0.31 0.45 16 46 H 0.09 0.81 7.42 -51.93 -0.39 0.42 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -34.55 390.99 -7.47 -42.02 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -6.24 Total: 18.93 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -2.72 Total: 5.17 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 0.46 Total: -64.55 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.16 Total: -23.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.55 -7.47 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318730703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.728 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds