Wall clock time and date at job start Wed Apr 1 2020 05:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46715 * 2 1 4 4 N 1.46900 * 109.47031 * 299.99501 * 3 2 1 5 5 C 1.46901 * 111.00221 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47509 * 180.02562 * 5 4 3 7 7 O 1.21297 * 119.99815 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00376 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99662 * 0.02562 * 9 8 6 11 11 C 1.38945 * 120.00499 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99823 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00510 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46878 * 59.99440 * 13 11 9 15 15 H 1.48493 * 109.47438 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47005 * 300.00098 * 13 11 9 17 17 N 1.46496 * 109.47518 * 240.00094 * 2 1 3 18 18 C 1.34772 * 120.00358 * 183.93387 * 17 2 1 19 19 O 1.21526 * 119.99661 * 5.18957 * 18 17 2 20 20 C 1.48153 * 120.00591 * 185.19330 * 18 17 2 21 21 C 1.39717 * 120.18525 * 179.97438 * 20 18 17 22 22 C 1.38827 * 117.89780 * 180.02562 * 21 20 18 23 23 C 1.38575 * 118.06910 * 359.97438 * 22 21 20 24 24 N 1.32173 * 120.06430 * 359.97438 * 23 22 21 25 25 N 1.28355 * 122.30652 * 359.70887 * 24 23 22 26 26 C 1.52998 * 109.47088 * 119.99229 * 2 1 3 27 27 C 1.53000 * 117.51971 * 348.46466 * 26 2 1 28 28 C 1.52997 * 60.00461 * 107.47381 * 27 26 2 29 29 H 1.08994 * 109.47629 * 300.00170 * 1 2 3 30 30 H 1.09003 * 109.46810 * 60.00788 * 1 2 3 31 31 H 1.08999 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47211 * 59.99574 * 3 2 1 33 33 H 1.08996 * 109.46899 * 179.97438 * 3 2 1 34 34 H 1.00905 * 111.00138 * 56.04513 * 4 3 2 35 35 H 1.09001 * 109.46554 * 300.00175 * 5 4 3 36 36 H 1.08996 * 109.47049 * 59.99602 * 5 4 3 37 37 H 0.97001 * 120.00414 * 0.02562 * 8 6 5 38 38 H 0.97008 * 120.00327 * 179.97438 * 12 11 9 39 39 H 0.97001 * 119.99793 * 3.92144 * 17 2 1 40 40 H 1.07992 * 121.05141 * 359.97438 * 21 20 18 41 41 H 1.07991 * 120.96628 * 180.02562 * 22 21 20 42 42 H 1.07991 * 119.96521 * 180.02562 * 23 22 21 43 43 H 1.08999 * 115.55330 * 202.75455 * 26 2 1 44 44 H 1.08997 * 117.49732 * 214.96791 * 27 26 2 45 45 H 1.09008 * 117.49543 * 359.97438 * 27 26 2 46 46 H 1.08996 * 117.50085 * 252.50958 * 28 27 26 47 47 H 1.08995 * 117.49713 * 107.48726 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5503 2.1350 -1.1995 5 6 2.0217 3.5259 -1.2338 6 6 1.5001 4.2027 -2.4751 7 8 0.8045 3.5867 -3.2549 8 7 1.8065 5.4922 -2.7189 9 6 1.3325 6.1078 -3.8485 10 1 0.7131 5.5593 -4.5428 11 6 1.6488 7.4371 -4.1002 12 7 2.4028 8.1043 -3.2557 13 14 1.0023 8.2761 -5.6389 14 1 -0.4826 8.2567 -5.6264 15 1 1.4783 9.6822 -5.6732 16 1 1.4966 7.5561 -6.8400 17 7 2.0184 -0.6906 -1.1961 18 6 3.3409 -0.8835 -1.3701 19 8 4.1212 -0.5699 -0.4929 20 6 3.8433 -1.4777 -2.6308 21 6 5.2135 -1.6789 -2.8154 22 6 5.6321 -2.2385 -4.0150 23 6 4.6670 -2.5636 -4.9547 24 7 3.3900 -2.3399 -4.6971 25 7 2.9932 -1.8285 -3.5887 26 6 2.0400 -0.7211 1.2493 27 6 1.0222 -1.0408 2.3460 28 6 1.5801 -2.1637 1.4694 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 0.5437 2.0925 -1.2560 35 1 1.6584 4.0544 -0.3524 36 1 3.1115 3.5400 -1.2425 37 1 2.3631 5.9847 -2.0956 38 1 2.6240 9.0323 -3.4315 39 1 1.3899 -1.0091 -1.8628 40 1 5.9246 -1.4069 -2.0495 41 1 6.6794 -2.4161 -4.2098 42 1 4.9584 -3.0009 -5.8982 43 1 3.0517 -0.4621 1.5616 44 1 1.3643 -0.9920 3.3798 45 1 -0.0111 -0.7370 2.1778 46 1 0.9141 -2.5989 0.7245 47 1 2.2893 -2.8538 1.9265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318730703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:05 Heat of formation + Delta-G solvation = -2.417180 kcal Electronic energy + Delta-G solvation = -30530.066148 eV Core-core repulsion = 26327.574208 eV Total energy + Delta-G solvation = -4202.491940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22105 -41.18070 -40.11937 -38.87759 -36.78799 -35.90270 -35.01727 -34.14073 -33.68763 -33.27191 -31.42717 -28.84321 -27.33664 -26.50929 -25.65901 -25.49930 -23.47557 -22.93904 -22.37280 -21.18151 -20.09969 -19.88525 -19.38342 -18.32216 -17.96349 -17.63207 -17.33795 -17.14396 -16.52487 -16.40713 -16.19266 -15.99519 -15.76057 -15.49111 -15.16918 -15.02056 -14.72184 -14.53576 -14.33077 -14.14604 -13.77334 -13.50322 -13.45576 -13.10280 -12.98926 -12.81143 -12.57635 -12.48805 -12.44680 -12.14178 -12.13539 -11.90381 -11.52100 -11.42948 -11.30029 -11.14541 -11.09992 -10.84693 -10.73626 -10.40036 -10.03898 -9.98935 -9.33039 -8.48287 -5.97534 -0.53975 -0.24130 1.38278 1.39911 1.51272 1.66621 1.97213 2.02437 2.27444 2.64338 2.80458 2.86632 3.06942 3.18476 3.45147 3.47279 3.60578 3.71416 3.82401 3.87807 3.96149 3.97876 4.15280 4.18978 4.22727 4.29809 4.40135 4.44658 4.51842 4.58676 4.69656 4.76075 4.81345 4.86197 4.91913 4.96604 5.02675 5.16565 5.22981 5.29309 5.37673 5.38466 5.51663 5.83645 6.05443 6.41417 6.49888 6.57627 7.10083 7.11496 7.52164 7.53265 8.08509 8.69015 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009198 B = 0.002928 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.273588 B = 9559.274136 C =11676.354392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.213 3.787 3 C 0.056 3.944 4 N -0.674 5.674 5 C 0.066 3.934 6 C 0.439 3.561 7 O -0.620 6.620 8 N -0.572 5.572 9 C -0.336 4.336 10 H 0.079 0.921 11 C -0.012 4.012 12 N -0.921 5.921 13 Si 0.994 3.006 14 H -0.270 1.270 15 H -0.269 1.269 16 H -0.273 1.273 17 N -0.677 5.677 18 C 0.581 3.419 19 O -0.551 6.551 20 C 0.007 3.993 21 C -0.081 4.081 22 C -0.102 4.102 23 C 0.054 3.946 24 N -0.278 5.278 25 N -0.236 5.236 26 C -0.163 4.163 27 C -0.163 4.163 28 C -0.170 4.170 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.346 0.654 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.411 0.589 40 H 0.171 0.829 41 H 0.204 0.796 42 H 0.217 0.783 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.095 0.905 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.988 -22.513 8.400 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.127 3.873 3 C -0.074 4.074 4 N -0.308 5.308 5 C -0.067 4.067 6 C 0.226 3.774 7 O -0.506 6.506 8 N -0.210 5.210 9 C -0.465 4.465 10 H 0.097 0.903 11 C -0.212 4.212 12 N -0.562 5.562 13 Si 0.817 3.183 14 H -0.195 1.195 15 H -0.193 1.193 16 H -0.198 1.198 17 N -0.326 5.326 18 C 0.365 3.635 19 O -0.428 6.428 20 C -0.140 4.140 21 C -0.110 4.110 22 C -0.131 4.131 23 C -0.108 4.108 24 N -0.120 5.120 25 N -0.082 5.082 26 C -0.183 4.183 27 C -0.200 4.200 28 C -0.207 4.207 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.167 0.833 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.229 0.771 38 H 0.088 0.912 39 H 0.247 0.753 40 H 0.188 0.812 41 H 0.221 0.779 42 H 0.233 0.767 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.132 0.868 46 H 0.114 0.886 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.034 -22.772 7.615 24.348 hybrid contribution 0.877 1.351 0.252 1.630 sum 4.911 -21.421 7.868 23.343 Atomic orbital electron populations 1.22252 0.91689 1.04180 1.03889 1.19848 0.94702 0.89465 0.83257 1.22324 1.00830 0.93479 0.90763 1.60007 1.17294 1.12963 1.40560 1.21485 1.01060 0.89615 0.94494 1.20784 0.84647 0.82331 0.89618 1.90489 1.43521 1.65322 1.51259 1.41916 1.46508 1.10143 1.22393 1.19642 1.30633 0.95143 1.01105 0.90326 1.26057 0.96696 0.96508 1.01960 1.69673 1.37136 1.11522 1.37821 0.84985 0.78646 0.77251 0.77435 1.19499 1.19344 1.19818 1.45761 1.06384 1.56774 1.23698 1.17622 0.83246 0.77945 0.84715 1.90711 1.56645 1.52735 1.42741 1.23004 0.94113 1.00472 0.96453 1.22710 0.95076 0.93646 0.99543 1.22970 1.04320 0.94254 0.91523 1.25207 0.89523 0.94009 1.02104 1.73045 1.18460 1.09558 1.10985 1.73150 1.32357 1.05786 0.96918 1.22393 0.99841 0.99259 0.96783 1.23269 0.99250 1.01686 0.95789 1.22867 1.03650 0.90891 1.03278 0.88728 0.91934 0.89925 0.92703 0.91363 0.83313 0.91396 0.89120 0.77075 0.91242 0.75289 0.81181 0.77911 0.76654 0.88396 0.87929 0.86759 0.88610 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 6.89 71.98 0.50 -2.42 16 2 C 0.21 4.77 0.65 3.61 0.00 4.77 16 3 C 0.06 1.50 4.52 86.31 0.39 1.89 16 4 N -0.67 -22.55 5.93 -517.94 -3.07 -25.63 16 5 C 0.07 2.44 6.17 85.56 0.53 2.97 16 6 C 0.44 21.75 7.82 87.66 0.69 22.44 16 7 O -0.62 -35.32 15.78 -3.08 -0.05 -35.37 16 8 N -0.57 -30.40 5.29 -306.99 -1.62 -32.02 16 9 C -0.34 -19.56 9.68 84.04 0.81 -18.74 16 10 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 11 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 12 N -0.92 -50.64 13.05 21.66 0.28 -50.36 16 13 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 N -0.68 -17.24 4.85 -425.47 -2.06 -19.31 16 18 C 0.58 16.48 7.22 86.88 0.63 17.11 16 19 O -0.55 -17.04 13.21 -3.80 -0.05 -17.09 16 20 C 0.01 0.17 6.83 41.99 0.29 0.46 16 21 C -0.08 -1.59 9.73 22.77 0.22 -1.37 16 22 C -0.10 -1.29 10.20 22.49 0.23 -1.06 16 23 C 0.05 0.85 11.31 84.72 0.96 1.81 16 24 N -0.28 -7.10 11.51 -57.15 -0.66 -7.76 16 25 N -0.24 -6.75 10.76 -48.49 -0.52 -7.27 16 26 C -0.16 -3.31 4.05 -10.79 -0.04 -3.35 16 27 C -0.16 -2.39 9.61 30.59 0.29 -2.09 16 28 C -0.17 -2.88 9.81 30.60 0.30 -2.58 16 29 H 0.09 1.38 6.84 -2.39 -0.02 1.37 16 30 H 0.06 1.32 6.57 -2.39 -0.02 1.31 16 31 H 0.08 1.22 7.01 -2.39 -0.02 1.20 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 2.12 6.64 -2.39 -0.02 2.11 16 34 H 0.35 11.61 6.47 -89.69 -0.58 11.02 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.40 20.04 7.90 -92.71 -0.73 19.30 16 38 H 0.28 14.31 8.31 -92.70 -0.77 13.54 16 39 H 0.41 10.38 7.85 -92.71 -0.73 9.66 16 40 H 0.17 2.91 7.72 -2.91 -0.02 2.88 16 41 H 0.20 0.59 8.06 -2.92 -0.02 0.57 16 42 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.10 2.42 7.17 -2.39 -0.02 2.40 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.11 1.39 5.87 -2.38 -0.01 1.37 16 46 H 0.10 1.56 7.42 -2.39 -0.02 1.54 16 47 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -77.58 390.99 -0.46 -78.04 By element: Atomic # 1 Polarization: 52.46 SS G_CDS: -0.99 Total: 51.47 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.26 Total: 19.61 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -7.66 Total: -142.35 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.10 Total: -52.46 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -77.58 -0.46 -78.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318730703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.628 kcal (2) G-P(sol) polarization free energy of solvation -77.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds