Wall clock time and date at job start Wed Apr 1 2020 05:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 120.00010 * 2 1 4 4 N 1.46501 * 109.46773 * 124.72284 * 3 2 1 5 5 C 1.35320 * 125.86458 * 124.71915 * 4 3 2 6 6 C 1.35342 * 106.17479 * 179.90242 * 5 4 3 7 7 C 1.50706 * 126.75398 * 180.12297 * 6 5 4 8 8 N 1.46493 * 109.46892 * 95.24579 * 7 6 5 9 9 C 1.34777 * 120.00089 * 180.02562 * 8 7 6 10 10 O 1.21349 * 119.99771 * 0.02562 * 9 8 7 11 11 C 1.49449 * 120.00268 * 179.97438 * 9 8 7 12 12 O 1.21348 * 120.00234 * 353.21993 * 11 9 8 13 13 N 1.34780 * 120.00202 * 173.21599 * 11 9 8 14 14 C 1.46928 * 120.62666 * 1.99597 * 13 11 9 15 15 C 1.52756 * 109.01081 * 233.58343 * 14 13 11 16 16 C 1.53037 * 109.38385 * 305.59459 * 15 14 13 17 17 C 1.50706 * 109.44949 * 181.25103 * 16 15 14 18 18 H 1.07991 * 120.00234 * 245.79046 * 17 16 15 19 19 C 1.37876 * 119.99964 * 65.78923 * 17 16 15 20 20 N 1.31524 * 120.00165 * 355.46637 * 19 17 16 21 21 Si 1.86802 * 120.00278 * 175.46396 * 19 17 16 22 22 H 1.48502 * 109.46942 * 94.99713 * 21 19 17 23 23 H 1.48498 * 109.47399 * 214.99895 * 21 19 17 24 24 H 1.48501 * 109.46904 * 334.99871 * 21 19 17 25 25 C 1.53038 * 109.53910 * 61.23903 * 16 15 14 26 26 C 1.46922 * 120.63296 * 182.28063 * 13 11 9 27 27 N 1.33780 * 106.49802 * 0.35272 * 6 5 4 28 28 N 1.28625 * 108.88198 * 359.77304 * 27 6 5 29 29 H 1.07996 * 119.99835 * 180.27535 * 1 2 3 30 30 H 1.07993 * 119.99871 * 0.27149 * 1 2 3 31 31 H 1.08003 * 120.00402 * 179.72802 * 2 1 3 32 32 H 1.08994 * 109.47076 * 244.72115 * 3 2 1 33 33 H 1.08995 * 109.46573 * 4.72581 * 3 2 1 34 34 H 1.08001 * 126.91050 * 0.02562 * 5 4 3 35 35 H 1.08998 * 109.47335 * 215.24650 * 7 6 5 36 36 H 1.09001 * 109.46857 * 335.25131 * 7 6 5 37 37 H 0.96999 * 120.00425 * 0.02562 * 8 7 6 38 38 H 1.08996 * 109.59004 * 353.42380 * 14 13 11 39 39 H 1.09001 * 109.58476 * 113.84683 * 14 13 11 40 40 H 1.09002 * 109.56722 * 185.55825 * 15 14 13 41 41 H 1.09000 * 109.35952 * 65.50113 * 15 14 13 42 42 H 1.09000 * 109.46172 * 301.21723 * 16 15 14 43 43 H 0.96991 * 120.00294 * 180.02562 * 20 19 17 44 44 H 1.09010 * 109.49729 * 178.68120 * 25 16 15 45 45 H 1.08996 * 109.52329 * 58.60591 * 25 16 15 46 46 H 1.08996 * 109.58937 * 246.15102 * 26 13 11 47 47 H 1.09002 * 109.58706 * 6.43932 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9890 1.3346 1.1353 5 6 4.3232 1.5494 1.0651 6 6 4.7814 1.4945 2.3374 7 6 6.2073 1.6742 2.7910 8 7 6.4199 3.0668 3.1929 9 6 7.6293 3.4630 3.6367 10 8 8.5422 2.6661 3.7029 11 6 7.8465 4.8838 4.0462 12 8 6.9743 5.7076 3.8647 13 7 9.0111 5.2501 4.6172 14 6 10.0930 4.2736 4.8039 15 6 10.5196 4.2780 6.2706 16 6 10.8807 5.7047 6.6903 17 6 11.3313 5.7059 8.1284 18 1 10.7437 6.2149 8.8780 19 6 12.4937 5.0571 8.4872 20 7 13.1622 4.3625 7.5925 21 14 13.1194 5.1645 10.2441 22 1 12.6434 3.9859 11.0119 23 1 14.6042 5.1862 10.2404 24 1 12.6078 6.4069 10.8766 25 6 9.6549 6.6084 6.5394 26 6 9.2206 6.6318 5.0705 27 7 3.7203 1.2443 3.1128 28 7 2.6739 1.1552 2.3703 29 1 -0.5400 -0.9353 0.0045 30 1 -0.5399 0.9353 -0.0044 31 1 1.8501 -0.9353 0.0044 32 1 2.6252 1.4004 -0.9292 33 1 1.3582 2.1318 0.0847 34 1 4.9051 1.7304 0.1734 35 1 6.4046 1.0174 3.6382 36 1 6.8829 1.4250 1.9728 37 1 5.6904 3.7039 3.1397 38 1 9.7392 3.2795 4.5306 39 1 10.9429 4.5460 4.1782 40 1 11.3865 3.6301 6.4006 41 1 9.6975 3.9146 6.8872 42 1 11.6862 6.0766 6.0571 43 1 13.9798 3.9058 7.8450 44 1 9.9064 7.6193 6.8606 45 1 8.8408 6.2235 7.1534 46 1 9.9980 7.1005 4.4671 47 1 8.2920 7.1939 4.9707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326719993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:18 Heat of formation + Delta-G solvation = 71.311384 kcal Electronic energy + Delta-G solvation = -29540.040881 eV Core-core repulsion = 25340.746051 eV Total energy + Delta-G solvation = -4199.294830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.70890 -40.64270 -38.50909 -37.00639 -36.71632 -35.31421 -33.42774 -33.16258 -31.75447 -31.17475 -30.05142 -28.03463 -27.44121 -26.30626 -24.20356 -22.66030 -22.43850 -22.17591 -21.65147 -20.66900 -20.29123 -18.95082 -17.97738 -17.21530 -16.96488 -16.63357 -16.27786 -15.92156 -15.82411 -15.51562 -15.20108 -14.92247 -14.49121 -14.30970 -14.24658 -13.83768 -13.69135 -13.09018 -13.02028 -12.85699 -12.83277 -12.62611 -12.26513 -12.18695 -11.95550 -11.69352 -11.39104 -11.29347 -10.91048 -10.81287 -10.63897 -10.55058 -10.31762 -10.27082 -10.06520 -9.81267 -9.63344 -9.36204 -9.16531 -9.09180 -8.52972 -8.26619 -8.03673 -5.97416 -4.02556 1.08911 1.22729 1.64039 1.90328 2.13942 2.72894 3.32578 3.39845 3.43277 3.45268 3.71451 3.85776 3.91909 4.07342 4.30793 4.34125 4.46340 4.57054 4.60008 4.71827 5.01398 5.13600 5.27954 5.33312 5.52141 5.64337 5.67735 5.78396 5.82494 5.84352 5.91598 6.07857 6.11059 6.13999 6.28299 6.50848 6.65322 6.77167 6.84880 7.01606 7.13467 7.20538 7.34554 7.71028 7.82539 7.92513 8.00305 8.09675 8.10297 8.28178 8.46481 9.01143 9.62005 11.09108 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.001783 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.491464 B =15703.717098 C =16078.401365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.185 4.185 3 C 0.144 3.856 4 N -0.291 5.291 5 C -0.026 4.026 6 C -0.042 4.042 7 C 0.207 3.793 8 N -0.700 5.700 9 C 0.514 3.486 10 O -0.500 6.500 11 C 0.500 3.500 12 O -0.546 6.546 13 N -0.558 5.558 14 C 0.043 3.957 15 C -0.118 4.118 16 C 0.045 3.955 17 C -0.513 4.513 18 H 0.054 0.946 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.123 4.123 26 C 0.106 3.894 27 N -0.249 5.249 28 N -0.074 5.074 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.195 0.805 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.413 0.587 38 H 0.143 0.857 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.260 0.740 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.923 -7.561 -20.841 30.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.204 4.204 3 C 0.024 3.976 4 N -0.083 5.083 5 C -0.178 4.178 6 C -0.181 4.181 7 C 0.083 3.917 8 N -0.354 5.354 9 C 0.297 3.703 10 O -0.377 6.377 11 C 0.282 3.718 12 O -0.426 6.426 13 N -0.289 5.289 14 C -0.077 4.077 15 C -0.157 4.157 16 C 0.027 3.973 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.161 4.161 26 C -0.015 4.015 27 N -0.117 5.117 28 N -0.054 5.054 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.212 0.788 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.249 0.751 38 H 0.159 0.841 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.686 -8.086 -19.930 30.543 hybrid contribution 0.910 0.511 0.091 1.047 sum -20.777 -7.575 -19.838 29.709 Atomic orbital electron populations 1.24029 0.95459 1.02999 0.95712 1.22831 0.96424 0.97209 1.03905 1.21231 0.92119 0.98587 0.85647 1.47492 1.07186 1.45560 1.08087 1.23529 0.84830 1.08016 1.01432 1.21866 0.96970 1.08883 0.90335 1.19456 0.87641 0.83061 1.01572 1.45773 1.12845 1.11564 1.65191 1.20400 0.82728 0.89358 0.77842 1.90385 1.40276 1.55013 1.51984 1.19778 0.83367 0.88103 0.80540 1.90697 1.43144 1.52534 1.56229 1.48245 1.13889 1.12361 1.54426 1.23453 0.88471 0.95296 1.00440 1.21884 1.01072 1.01980 0.90717 1.18701 0.91285 0.90624 0.96729 1.21184 1.07217 1.33289 0.93470 0.92761 1.24963 0.96750 0.95107 0.97103 1.69886 1.17052 1.32307 1.33557 0.86624 0.78023 0.78353 0.85257 1.20840 1.21237 1.19957 1.22021 1.00438 1.01260 0.92364 1.21896 1.01298 0.81145 0.97202 1.75177 0.95457 1.15014 1.26035 1.78381 1.21260 1.18776 0.86987 0.87242 0.87790 0.86357 0.86582 0.87692 0.78782 0.88793 0.88893 0.75088 0.84103 0.92217 0.88281 0.94495 0.95193 0.93021 0.91840 0.92917 0.91520 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.44 14.32 29.01 0.42 -0.03 16 2 C -0.18 -0.70 9.63 -36.02 -0.35 -1.05 16 3 C 0.14 0.47 6.90 -5.19 -0.04 0.44 16 4 N -0.29 -2.13 3.43 -62.44 -0.21 -2.34 16 5 C -0.03 -0.18 11.50 -17.05 -0.20 -0.37 16 6 C -0.04 -0.41 6.61 -82.77 -0.55 -0.96 16 7 C 0.21 2.07 6.23 -5.19 -0.03 2.03 16 8 N -0.70 -8.52 5.54 -61.91 -0.34 -8.86 16 9 C 0.51 7.95 7.80 -11.59 -0.09 7.86 16 10 O -0.50 -8.50 13.02 5.50 0.07 -8.43 16 11 C 0.50 8.87 7.76 -11.58 -0.09 8.78 16 12 O -0.55 -10.23 15.91 5.50 0.09 -10.14 16 13 N -0.56 -10.55 2.98 -173.54 -0.52 -11.07 16 14 C 0.04 0.86 6.21 -3.93 -0.02 0.84 16 15 C -0.12 -2.77 5.19 -26.84 -0.14 -2.91 16 16 C 0.05 1.11 2.00 -91.73 -0.18 0.92 16 17 C -0.51 -14.02 8.49 -34.44 -0.29 -14.32 16 18 H 0.05 1.48 7.75 -52.49 -0.41 1.07 16 19 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 20 N -0.89 -25.14 11.57 55.43 0.64 -24.50 16 21 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 26 C 0.11 1.96 6.43 -3.71 -0.02 1.94 16 27 N -0.25 -3.14 12.41 33.29 0.41 -2.73 16 28 N -0.07 -0.83 12.92 60.35 0.78 -0.05 16 29 H 0.11 0.26 8.06 -52.49 -0.42 -0.16 16 30 H 0.10 0.22 7.84 -52.49 -0.41 -0.19 16 31 H 0.12 0.49 8.06 -52.48 -0.42 0.07 16 32 H 0.12 0.03 8.07 -51.93 -0.42 -0.39 16 33 H 0.10 0.24 7.79 -51.93 -0.40 -0.16 16 34 H 0.20 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.41 4.90 7.95 -40.82 -0.32 4.57 16 38 H 0.14 2.77 3.77 -57.01 -0.22 2.55 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 2.58 6.34 -51.93 -0.33 2.25 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.08 1.42 7.01 -51.93 -0.36 1.06 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -33.74 392.53 -6.67 -40.41 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.66 Total: 3.39 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.82 Total: 2.10 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.76 Total: -49.55 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.16 Total: -18.57 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.74 -6.67 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326719993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.724 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds