Wall clock time and date at job start Wed Apr 1 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 120.00010 * 2 1 4 4 N 1.46501 * 109.46773 * 124.72284 * 3 2 1 5 5 C 1.35320 * 125.86458 * 124.71915 * 4 3 2 6 6 C 1.35342 * 106.17479 * 179.90242 * 5 4 3 7 7 C 1.50706 * 126.75398 * 180.12297 * 6 5 4 8 8 N 1.46493 * 109.46892 * 95.24579 * 7 6 5 9 9 C 1.34777 * 120.00089 * 180.02562 * 8 7 6 10 10 O 1.21349 * 119.99771 * 0.02562 * 9 8 7 11 11 C 1.49449 * 120.00268 * 179.97438 * 9 8 7 12 12 O 1.21348 * 120.00234 * 353.21993 * 11 9 8 13 13 N 1.34780 * 120.00202 * 173.21599 * 11 9 8 14 14 C 1.46928 * 120.62666 * 1.99597 * 13 11 9 15 15 C 1.52756 * 109.01081 * 233.58343 * 14 13 11 16 16 C 1.53037 * 109.38385 * 305.59459 * 15 14 13 17 17 C 1.50706 * 109.44949 * 181.25103 * 16 15 14 18 18 H 1.07991 * 120.00234 * 245.79046 * 17 16 15 19 19 C 1.37876 * 119.99964 * 65.78923 * 17 16 15 20 20 N 1.31524 * 120.00165 * 355.46637 * 19 17 16 21 21 Si 1.86802 * 120.00278 * 175.46396 * 19 17 16 22 22 H 1.48502 * 109.46942 * 94.99713 * 21 19 17 23 23 H 1.48498 * 109.47399 * 214.99895 * 21 19 17 24 24 H 1.48501 * 109.46904 * 334.99871 * 21 19 17 25 25 C 1.53038 * 109.53910 * 61.23903 * 16 15 14 26 26 C 1.46922 * 120.63296 * 182.28063 * 13 11 9 27 27 N 1.33780 * 106.49802 * 0.35272 * 6 5 4 28 28 N 1.28625 * 108.88198 * 359.77304 * 27 6 5 29 29 H 1.07996 * 119.99835 * 180.27535 * 1 2 3 30 30 H 1.07993 * 119.99871 * 0.27149 * 1 2 3 31 31 H 1.08003 * 120.00402 * 179.72802 * 2 1 3 32 32 H 1.08994 * 109.47076 * 244.72115 * 3 2 1 33 33 H 1.08995 * 109.46573 * 4.72581 * 3 2 1 34 34 H 1.08001 * 126.91050 * 0.02562 * 5 4 3 35 35 H 1.08998 * 109.47335 * 215.24650 * 7 6 5 36 36 H 1.09001 * 109.46857 * 335.25131 * 7 6 5 37 37 H 0.96999 * 120.00425 * 0.02562 * 8 7 6 38 38 H 1.08996 * 109.59004 * 353.42380 * 14 13 11 39 39 H 1.09001 * 109.58476 * 113.84683 * 14 13 11 40 40 H 1.09002 * 109.56722 * 185.55825 * 15 14 13 41 41 H 1.09000 * 109.35952 * 65.50113 * 15 14 13 42 42 H 1.09000 * 109.46172 * 301.21723 * 16 15 14 43 43 H 0.96991 * 120.00294 * 180.02562 * 20 19 17 44 44 H 1.09010 * 109.49729 * 178.68120 * 25 16 15 45 45 H 1.08996 * 109.52329 * 58.60591 * 25 16 15 46 46 H 1.08996 * 109.58937 * 246.15102 * 26 13 11 47 47 H 1.09002 * 109.58706 * 6.43932 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9890 1.3346 1.1353 5 6 4.3232 1.5494 1.0651 6 6 4.7814 1.4945 2.3374 7 6 6.2073 1.6742 2.7910 8 7 6.4199 3.0668 3.1929 9 6 7.6293 3.4630 3.6367 10 8 8.5422 2.6661 3.7029 11 6 7.8465 4.8838 4.0462 12 8 6.9743 5.7076 3.8647 13 7 9.0111 5.2501 4.6172 14 6 10.0930 4.2736 4.8039 15 6 10.5196 4.2780 6.2706 16 6 10.8807 5.7047 6.6903 17 6 11.3313 5.7059 8.1284 18 1 10.7437 6.2149 8.8780 19 6 12.4937 5.0571 8.4872 20 7 13.1622 4.3625 7.5925 21 14 13.1194 5.1645 10.2441 22 1 12.6434 3.9859 11.0119 23 1 14.6042 5.1862 10.2404 24 1 12.6078 6.4069 10.8766 25 6 9.6549 6.6084 6.5394 26 6 9.2206 6.6318 5.0705 27 7 3.7203 1.2443 3.1128 28 7 2.6739 1.1552 2.3703 29 1 -0.5400 -0.9353 0.0045 30 1 -0.5399 0.9353 -0.0044 31 1 1.8501 -0.9353 0.0044 32 1 2.6252 1.4004 -0.9292 33 1 1.3582 2.1318 0.0847 34 1 4.9051 1.7304 0.1734 35 1 6.4046 1.0174 3.6382 36 1 6.8829 1.4250 1.9728 37 1 5.6904 3.7039 3.1397 38 1 9.7392 3.2795 4.5306 39 1 10.9429 4.5460 4.1782 40 1 11.3865 3.6301 6.4006 41 1 9.6975 3.9146 6.8872 42 1 11.6862 6.0766 6.0571 43 1 13.9798 3.9058 7.8450 44 1 9.9064 7.6193 6.8606 45 1 8.8408 6.2235 7.1534 46 1 9.9980 7.1005 4.4671 47 1 8.2920 7.1939 4.9707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326719993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:17 Heat of formation + Delta-G solvation = 47.623060 kcal Electronic energy + Delta-G solvation = -29541.068083 eV Core-core repulsion = 25340.746051 eV Total energy + Delta-G solvation = -4200.322033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.34042 -41.98974 -39.86802 -38.58383 -37.23461 -36.28829 -35.21507 -33.67785 -33.02460 -32.51805 -31.76284 -28.85722 -28.20793 -27.80931 -25.71895 -24.13957 -23.58892 -23.21550 -22.46965 -21.72360 -20.99026 -20.49821 -18.91533 -18.43227 -18.24407 -18.00472 -17.41300 -17.11632 -16.75733 -16.44238 -16.22891 -16.01822 -15.84267 -15.47819 -15.27117 -14.75855 -14.68050 -14.61961 -14.48615 -14.37931 -14.01208 -13.80081 -13.36290 -13.20399 -13.20329 -12.81458 -12.68275 -12.51640 -12.40367 -12.28572 -12.14245 -11.96210 -11.91544 -11.48194 -11.20120 -11.04998 -10.97053 -10.56335 -10.50338 -10.39486 -10.38259 -9.88423 -9.67628 -8.07213 -6.19600 0.32459 0.54130 0.90042 1.02777 1.41768 1.43488 1.53391 1.61605 1.79500 2.12318 2.45215 2.57328 3.15181 3.20361 3.28231 3.58887 3.77055 3.84023 4.09910 4.13029 4.13530 4.29099 4.34587 4.42386 4.52073 4.52355 4.57042 4.59389 4.77363 4.82495 4.85986 4.92763 4.95590 4.97710 5.15513 5.21559 5.34604 5.40955 5.50316 5.52390 5.57047 5.64208 5.69865 5.96294 5.99645 6.10371 6.30290 6.39878 6.68385 6.90181 6.92468 7.43332 7.47801 8.97705 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.001783 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.491464 B =15703.717098 C =16078.401365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.197 4.197 3 C 0.136 3.864 4 N -0.283 5.283 5 C -0.001 4.001 6 C -0.064 4.064 7 C 0.210 3.790 8 N -0.681 5.681 9 C 0.518 3.482 10 O -0.518 6.518 11 C 0.501 3.499 12 O -0.554 6.554 13 N -0.567 5.567 14 C 0.059 3.941 15 C -0.108 4.108 16 C 0.042 3.958 17 C -0.535 4.535 18 H 0.049 0.951 19 C 0.016 3.984 20 N -0.913 5.913 21 Si 0.950 3.050 22 H -0.280 1.280 23 H -0.282 1.282 24 H -0.270 1.270 25 C -0.114 4.114 26 C 0.111 3.889 27 N -0.294 5.294 28 N -0.108 5.108 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.154 0.846 33 H 0.116 0.884 34 H 0.241 0.759 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.416 0.584 38 H 0.152 0.848 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.022 0.978 42 H 0.007 0.993 43 H 0.261 0.739 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.972 -7.325 -22.802 32.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.216 4.216 3 C 0.018 3.982 4 N -0.075 5.075 5 C -0.153 4.153 6 C -0.203 4.203 7 C 0.086 3.914 8 N -0.333 5.333 9 C 0.300 3.700 10 O -0.396 6.396 11 C 0.284 3.716 12 O -0.434 6.434 13 N -0.299 5.299 14 C -0.062 4.062 15 C -0.147 4.147 16 C 0.024 3.976 17 C -0.573 4.573 18 H 0.067 0.933 19 C -0.184 4.184 20 N -0.552 5.552 21 Si 0.776 3.224 22 H -0.206 1.206 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.152 4.152 26 C -0.010 4.010 27 N -0.161 5.161 28 N -0.088 5.088 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.171 0.829 33 H 0.134 0.866 34 H 0.257 0.743 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.253 0.747 38 H 0.168 0.832 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.025 0.975 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.809 -7.853 -21.906 32.586 hybrid contribution 1.117 0.416 0.615 1.342 sum -21.692 -7.437 -21.291 31.292 Atomic orbital electron populations 1.24211 0.95479 1.03730 0.94809 1.22863 0.96715 0.97321 1.04718 1.21673 0.92449 0.98522 0.85588 1.47851 1.08063 1.43741 1.07846 1.24153 0.84605 1.04887 1.01698 1.21909 0.96294 1.10598 0.91481 1.19579 0.88733 0.81078 1.01987 1.45743 1.11547 1.12680 1.63362 1.19953 0.83594 0.88127 0.78375 1.90349 1.41058 1.54877 1.53331 1.20152 0.82542 0.89142 0.79783 1.90689 1.43096 1.53184 1.56384 1.48227 1.14173 1.12221 1.55229 1.23234 0.88965 0.96321 0.97638 1.21658 0.99278 1.00634 0.93126 1.18668 0.92102 0.91905 0.94970 1.21544 1.07628 1.33339 0.94837 0.93278 1.25688 0.97026 0.94824 1.00815 1.70005 1.17270 1.32744 1.35202 0.85666 0.77518 0.78360 0.80818 1.20610 1.20723 1.19433 1.21866 0.98355 1.00712 0.94268 1.21843 1.02253 0.81434 0.95507 1.75109 0.96640 1.16519 1.27859 1.78301 1.21279 1.20562 0.88611 0.86940 0.86774 0.87170 0.82874 0.86608 0.74305 0.90143 0.86207 0.74712 0.83223 0.92162 0.91189 0.95871 0.97531 0.92986 0.90992 0.93841 0.90259 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 14.32 67.78 0.97 0.28 16 2 C -0.20 -1.18 9.63 25.65 0.25 -0.93 16 3 C 0.14 0.50 6.90 85.64 0.59 1.09 16 4 N -0.28 -3.49 3.43 -351.47 -1.21 -4.70 16 5 C 0.00 -0.01 11.50 83.49 0.96 0.95 16 6 C -0.06 -1.14 6.61 41.59 0.28 -0.87 16 7 C 0.21 3.83 6.23 85.64 0.53 4.36 16 8 N -0.68 -15.43 5.54 -468.15 -2.59 -18.03 16 9 C 0.52 15.31 7.80 87.27 0.68 15.99 16 10 O -0.52 -17.03 13.02 -3.24 -0.04 -17.07 16 11 C 0.50 17.10 7.76 87.27 0.68 17.78 16 12 O -0.55 -19.76 15.91 -3.24 -0.05 -19.81 16 13 N -0.57 -20.98 2.98 -821.33 -2.45 -23.42 16 14 C 0.06 2.35 6.21 86.22 0.54 2.88 16 15 C -0.11 -5.21 5.19 30.53 0.16 -5.05 16 16 C 0.04 2.11 2.00 -11.51 -0.02 2.09 16 17 C -0.54 -29.75 8.49 25.60 0.22 -29.53 16 18 H 0.05 2.71 7.75 -2.92 -0.02 2.68 16 19 C 0.02 0.86 5.36 84.65 0.45 1.32 16 20 N -0.91 -52.56 11.57 21.45 0.25 -52.31 16 21 Si 0.95 44.09 29.54 68.60 2.03 46.11 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C -0.11 -4.74 5.30 30.67 0.16 -4.58 16 26 C 0.11 3.99 6.43 86.36 0.56 4.54 16 27 N -0.29 -7.33 12.41 -48.60 -0.60 -7.93 16 28 N -0.11 -2.35 12.92 37.02 0.48 -1.87 16 29 H 0.11 0.43 8.06 -2.91 -0.02 0.41 16 30 H 0.11 0.28 7.84 -2.91 -0.02 0.26 16 31 H 0.11 0.82 8.06 -2.91 -0.02 0.79 16 32 H 0.15 -0.59 8.07 -2.39 -0.02 -0.61 16 33 H 0.12 0.22 7.79 -2.39 -0.02 0.20 16 34 H 0.24 0.02 8.06 -2.91 -0.02 0.00 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.42 9.15 7.95 -92.71 -0.74 8.42 16 38 H 0.15 5.85 3.77 -82.86 -0.31 5.54 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.07 3.77 6.34 -2.39 -0.02 3.76 16 41 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 45 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.09 3.13 7.01 -2.39 -0.02 3.11 16 Total: -1.00 -74.69 392.53 2.77 -71.92 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -0.04 Total: 16.78 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 7.00 Total: 10.33 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -6.12 Total: -108.27 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.09 Total: -36.88 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.69 2.77 -71.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326719993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.544 kcal (2) G-P(sol) polarization free energy of solvation -74.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds