Wall clock time and date at job start Wed Apr 1 2020 04:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46508 * 120.00142 * 2 1 4 4 C 1.52997 * 109.47003 * 270.00509 * 3 2 1 5 5 C 1.53003 * 109.46754 * 299.99184 * 4 3 2 6 6 C 1.52995 * 109.47340 * 59.99621 * 4 3 2 7 7 C 1.53001 * 109.46919 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47111 * 179.97438 * 7 4 3 9 9 C 1.36945 * 120.00076 * 179.97438 * 8 7 4 10 10 H 1.07995 * 119.99570 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99771 * 179.97438 * 9 8 7 12 12 N 1.31611 * 120.00202 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99728 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46967 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47400 * 119.99760 * 13 11 9 16 16 H 1.48499 * 109.46980 * 240.00091 * 13 11 9 17 17 C 1.34773 * 120.00303 * 179.97438 * 2 1 3 18 18 O 1.21564 * 120.00298 * 182.06876 * 17 2 1 19 19 C 1.47851 * 119.99779 * 2.06987 * 17 2 1 20 20 C 1.39722 * 119.43667 * 172.67943 * 19 17 2 21 21 C 1.36996 * 119.59213 * 180.27854 * 20 19 17 22 22 C 1.39895 * 118.36788 * 359.46080 * 21 20 19 23 23 N 1.35430 * 133.68581 * 180.25398 * 22 21 20 24 24 C 1.30928 * 109.56912 * 180.02562 * 23 22 21 25 25 O 1.35181 * 124.99668 * 180.02562 * 24 23 22 26 26 N 1.36389 * 110.00534 * 0.02562 * 24 23 22 27 27 H 0.97000 * 126.31847 * 179.97438 * 26 24 23 28 28 C 1.38246 * 107.36233 * 0.02562 * 26 24 23 29 29 N 1.31770 * 133.71445 * 179.97438 * 28 26 24 30 30 H 1.09007 * 109.46957 * 263.74894 * 1 2 3 31 31 H 1.08999 * 109.47223 * 23.74592 * 1 2 3 32 32 H 1.09002 * 109.47109 * 143.74909 * 1 2 3 33 33 H 1.09008 * 109.46664 * 29.99864 * 3 2 1 34 34 H 1.08993 * 109.47205 * 149.99583 * 3 2 1 35 35 H 1.09001 * 109.46756 * 60.00612 * 5 4 3 36 36 H 1.09003 * 109.46772 * 180.02562 * 5 4 3 37 37 H 1.09000 * 109.47065 * 300.00417 * 5 4 3 38 38 H 1.08997 * 109.46986 * 60.00157 * 6 4 3 39 39 H 1.09005 * 109.46829 * 179.97438 * 6 4 3 40 40 H 1.09001 * 109.47339 * 300.00105 * 6 4 3 41 41 H 1.08997 * 109.47300 * 299.99777 * 7 4 3 42 42 H 1.09005 * 109.47051 * 59.99639 * 7 4 3 43 43 H 0.97001 * 120.00069 * 359.97438 * 8 7 4 44 44 H 0.96998 * 120.00119 * 180.02562 * 12 11 9 45 45 H 1.08000 * 120.20353 * 0.02562 * 20 19 17 46 46 H 1.07993 * 120.81907 * 179.74259 * 21 20 19 47 47 H 0.96701 * 114.00075 * 269.97338 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2794 0.6442 -2.1637 6 6 1.1155 1.8934 -2.1637 7 6 3.2169 3.0358 -1.4425 8 7 3.4615 3.4585 -2.8236 9 6 4.1339 4.6249 -3.0739 10 1 4.4841 5.2330 -2.2530 11 6 4.3661 5.0251 -4.3826 12 7 3.9396 4.2838 -5.3830 13 14 5.2839 6.6159 -4.7239 14 1 5.6532 7.2600 -3.4378 15 1 6.5141 6.3206 -5.5014 16 1 4.4134 7.5320 -5.5038 17 6 2.1389 -1.1671 0.0005 18 8 3.3539 -1.1675 0.0385 19 6 1.4004 -2.4472 -0.0452 20 6 2.1071 -3.6426 -0.1993 21 6 1.4256 -4.8300 -0.2477 22 6 0.0320 -4.8019 -0.1284 23 7 -0.9263 -5.7588 -0.1287 24 6 -2.1023 -5.2018 0.0165 25 8 -3.2767 -5.8698 0.0590 26 7 -1.9681 -3.8483 0.1186 27 1 -2.6866 -3.2067 0.2322 28 6 -0.6191 -3.5596 0.0291 29 7 0.0771 -2.4414 0.0637 30 1 -0.3633 -0.1119 1.0216 31 1 -0.3633 0.9406 -0.4138 32 1 -0.3633 -0.8288 -0.6077 33 1 1.6084 2.0284 0.5139 34 1 3.1498 1.1385 0.5139 35 1 2.7344 -0.2998 -2.1637 36 1 3.4614 0.9591 -3.1913 37 1 4.2318 0.5139 -1.6498 38 1 0.5265 2.6530 -1.6498 39 1 1.2972 2.2085 -3.1912 40 1 0.5705 0.9494 -2.1637 41 1 2.6275 3.7952 -0.9287 42 1 4.1693 2.9059 -0.9285 43 1 3.1472 2.9121 -3.5609 44 1 4.1022 4.5632 -6.2975 45 1 3.1837 -3.6302 -0.2837 46 1 1.9515 -5.7652 -0.3704 47 1 -3.6922 -5.9904 -0.8059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329328365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:45 Heat of formation + Delta-G solvation = 53.432344 kcal Electronic energy + Delta-G solvation = -30637.550720 eV Core-core repulsion = 26437.480597 eV Total energy + Delta-G solvation = -4200.070123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.90848 -40.57123 -39.04327 -37.63657 -36.99812 -35.22116 -34.24041 -33.04129 -31.78368 -30.37729 -29.83180 -27.79010 -26.79865 -26.00052 -25.45793 -24.32566 -23.68037 -22.43220 -22.29101 -20.38682 -19.84027 -18.39263 -18.34862 -17.96918 -17.39055 -17.19721 -16.65815 -16.08793 -15.68218 -15.40008 -15.06658 -14.62159 -14.28767 -14.03962 -13.88487 -13.78545 -13.51997 -13.12730 -13.00941 -12.76733 -12.69492 -12.57588 -12.50173 -12.19530 -12.03363 -11.77869 -11.32260 -11.18430 -11.09822 -10.93429 -10.80001 -10.67443 -10.35108 -10.19635 -10.13691 -9.84402 -9.65069 -9.46842 -9.31053 -8.92409 -8.81849 -8.48092 -6.83822 -5.71223 -2.98407 -0.07291 0.75591 1.49328 1.87234 2.65998 2.84981 3.04085 3.46649 3.50624 3.52366 3.54517 3.69044 4.01809 4.33396 4.42198 4.59841 4.64802 5.07493 5.17462 5.19408 5.23222 5.29086 5.45913 5.52710 5.57737 5.61839 5.63295 5.77133 5.91541 5.93773 5.96959 6.01576 6.10613 6.18325 6.20569 6.35248 6.47993 6.57506 6.65582 6.78175 6.81415 6.83184 6.99004 7.01540 7.02620 7.16399 7.36244 7.76095 8.09060 8.48441 9.59570 10.19190 10.53887 11.52051 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.002094 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.526254 B =13365.556973 C =13600.404347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.585 5.585 3 C 0.124 3.876 4 C -0.085 4.085 5 C -0.124 4.124 6 C -0.136 4.136 7 C 0.165 3.835 8 N -0.728 5.728 9 C -0.234 4.234 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.293 1.293 17 C 0.568 3.432 18 O -0.520 6.520 19 C 0.126 3.874 20 C -0.118 4.118 21 C -0.025 4.025 22 C 0.034 3.966 23 N -0.479 5.479 24 C 0.474 3.526 25 O -0.437 6.437 26 N -0.586 5.586 27 H 0.430 0.570 28 C 0.240 3.760 29 N -0.441 5.441 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.385 0.615 44 H 0.253 0.747 45 H 0.162 0.838 46 H 0.153 0.847 47 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 -20.770 12.618 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.316 5.316 3 C 0.002 3.998 4 C -0.087 4.087 5 C -0.182 4.182 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.365 4.365 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.220 1.220 16 H -0.220 1.220 17 C 0.353 3.647 18 O -0.395 6.395 19 C -0.021 4.021 20 C -0.141 4.141 21 C -0.052 4.052 22 C -0.088 4.088 23 N -0.210 5.210 24 C 0.169 3.831 25 O -0.239 6.239 26 N -0.214 5.214 27 H 0.271 0.729 28 C 0.003 3.997 29 N -0.158 5.158 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.220 0.780 44 H 0.063 0.937 45 H 0.179 0.821 46 H 0.170 0.830 47 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -15.573 -20.804 13.285 29.186 hybrid contribution -0.311 1.115 -0.964 1.507 sum -15.884 -19.689 12.321 28.138 Atomic orbital electron populations 1.22448 0.78673 1.03511 1.02270 1.47638 1.07679 1.05600 1.70651 1.21675 0.97518 0.83277 0.97337 1.21107 0.96470 0.97024 0.94073 1.21725 0.99252 0.96191 1.00992 1.21877 0.95766 0.99898 1.01746 1.20585 0.95720 0.91143 0.88849 1.42399 1.68175 1.25724 1.01002 1.19292 1.27432 0.98066 0.91736 0.91204 1.24717 1.01896 0.98985 0.95606 1.69665 1.51806 1.38844 0.98069 0.86125 0.79189 0.83250 0.77703 1.20607 1.21956 1.22015 1.17622 0.86595 0.82582 0.77859 1.90847 1.12322 1.86384 1.49968 1.21110 0.87267 0.94951 0.98784 1.21623 1.02738 0.90586 0.99172 1.20488 0.89606 0.99497 0.95645 1.19670 0.94755 0.89308 1.05057 1.70657 0.96439 1.30655 1.23290 1.20236 0.87482 0.78037 0.97356 1.84829 1.30284 1.72714 1.36106 1.43023 1.06740 1.08626 1.62968 0.72905 1.18694 0.84809 0.92055 1.04132 1.67013 1.07368 1.26515 1.14865 0.93016 0.91448 0.88198 0.90334 0.89489 0.94492 0.92056 0.92372 0.93255 0.91506 0.93614 0.96460 0.96181 0.78013 0.93675 0.82085 0.82974 0.72440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 7.99 59.84 0.48 1.22 16 2 N -0.59 -7.43 2.40 -182.68 -0.44 -7.87 16 3 C 0.12 1.73 4.58 -4.04 -0.02 1.71 16 4 C -0.09 -1.43 0.60 -154.51 -0.09 -1.52 16 5 C -0.12 -2.25 7.00 37.16 0.26 -1.99 16 6 C -0.14 -2.16 7.07 37.16 0.26 -1.90 16 7 C 0.17 3.38 5.15 -4.04 -0.02 3.36 16 8 N -0.73 -18.58 5.00 -59.91 -0.30 -18.87 16 9 C -0.23 -6.63 9.99 -15.06 -0.15 -6.78 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 13 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 C 0.57 7.80 5.99 -12.33 -0.07 7.73 16 18 O -0.52 -8.46 14.24 5.31 0.08 -8.39 16 19 C 0.13 1.47 6.62 -82.97 -0.55 0.92 16 20 C -0.12 -1.17 9.55 -39.48 -0.38 -1.55 16 21 C -0.02 -0.22 10.16 -39.41 -0.40 -0.62 16 22 C 0.03 0.34 7.24 -84.56 -0.61 -0.27 16 23 N -0.48 -4.76 11.30 -12.11 -0.14 -4.90 16 24 C 0.47 3.39 9.39 -88.78 -0.83 2.55 16 25 O -0.44 -1.79 13.62 -17.24 -0.23 -2.03 16 26 N -0.59 -3.80 6.25 -13.33 -0.08 -3.88 16 27 H 0.43 1.50 8.96 -40.82 -0.37 1.13 16 28 C 0.24 2.30 8.46 -155.52 -1.32 0.98 16 29 N -0.44 -4.60 6.02 -8.77 -0.05 -4.65 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 32 H 0.10 1.01 5.27 -52.21 -0.27 0.74 16 33 H 0.08 0.96 8.07 -51.92 -0.42 0.54 16 34 H 0.09 1.30 7.39 -51.93 -0.38 0.92 16 35 H 0.04 0.62 6.18 -51.93 -0.32 0.30 16 36 H 0.06 1.26 6.86 -51.93 -0.36 0.90 16 37 H 0.06 1.11 7.77 -51.93 -0.40 0.71 16 38 H 0.05 0.73 8.07 -51.93 -0.42 0.32 16 39 H 0.07 1.27 6.86 -51.93 -0.36 0.91 16 40 H 0.04 0.64 6.09 -51.93 -0.32 0.32 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.38 10.30 5.36 -40.82 -0.22 10.08 16 44 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.16 1.48 7.63 -52.49 -0.40 1.08 16 46 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.42 -0.56 9.06 45.56 0.41 -0.15 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -36.14 376.56 -8.72 -44.86 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.39 Total: 6.92 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -3.54 Total: 3.26 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.29 Total: -68.03 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.16 Total: -10.42 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.14 -8.72 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329328365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.291 kcal (2) G-P(sol) polarization free energy of solvation -36.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds