Wall clock time and date at job start Wed Apr 1 2020 04:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46508 * 120.00142 * 2 1 4 4 C 1.52997 * 109.47003 * 270.00509 * 3 2 1 5 5 C 1.53003 * 109.46754 * 299.99184 * 4 3 2 6 6 C 1.52995 * 109.47340 * 59.99621 * 4 3 2 7 7 C 1.53001 * 109.46919 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47111 * 179.97438 * 7 4 3 9 9 C 1.36945 * 120.00076 * 179.97438 * 8 7 4 10 10 H 1.07995 * 119.99570 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99771 * 179.97438 * 9 8 7 12 12 N 1.31611 * 120.00202 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99728 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46967 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47400 * 119.99760 * 13 11 9 16 16 H 1.48499 * 109.46980 * 240.00091 * 13 11 9 17 17 C 1.34773 * 120.00303 * 179.97438 * 2 1 3 18 18 O 1.21564 * 120.00298 * 182.06876 * 17 2 1 19 19 C 1.47851 * 119.99779 * 2.06987 * 17 2 1 20 20 C 1.39722 * 119.43667 * 172.67943 * 19 17 2 21 21 C 1.36996 * 119.59213 * 180.27854 * 20 19 17 22 22 C 1.39895 * 118.36788 * 359.46080 * 21 20 19 23 23 N 1.35430 * 133.68581 * 180.25398 * 22 21 20 24 24 C 1.30928 * 109.56912 * 180.02562 * 23 22 21 25 25 O 1.35181 * 124.99668 * 180.02562 * 24 23 22 26 26 N 1.36389 * 110.00534 * 0.02562 * 24 23 22 27 27 H 0.97000 * 126.31847 * 179.97438 * 26 24 23 28 28 C 1.38246 * 107.36233 * 0.02562 * 26 24 23 29 29 N 1.31770 * 133.71445 * 179.97438 * 28 26 24 30 30 H 1.09007 * 109.46957 * 263.74894 * 1 2 3 31 31 H 1.08999 * 109.47223 * 23.74592 * 1 2 3 32 32 H 1.09002 * 109.47109 * 143.74909 * 1 2 3 33 33 H 1.09008 * 109.46664 * 29.99864 * 3 2 1 34 34 H 1.08993 * 109.47205 * 149.99583 * 3 2 1 35 35 H 1.09001 * 109.46756 * 60.00612 * 5 4 3 36 36 H 1.09003 * 109.46772 * 180.02562 * 5 4 3 37 37 H 1.09000 * 109.47065 * 300.00417 * 5 4 3 38 38 H 1.08997 * 109.46986 * 60.00157 * 6 4 3 39 39 H 1.09005 * 109.46829 * 179.97438 * 6 4 3 40 40 H 1.09001 * 109.47339 * 300.00105 * 6 4 3 41 41 H 1.08997 * 109.47300 * 299.99777 * 7 4 3 42 42 H 1.09005 * 109.47051 * 59.99639 * 7 4 3 43 43 H 0.97001 * 120.00069 * 359.97438 * 8 7 4 44 44 H 0.96998 * 120.00119 * 180.02562 * 12 11 9 45 45 H 1.08000 * 120.20353 * 0.02562 * 20 19 17 46 46 H 1.07993 * 120.81907 * 179.74259 * 21 20 19 47 47 H 0.96701 * 114.00075 * 269.97338 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2794 0.6442 -2.1637 6 6 1.1155 1.8934 -2.1637 7 6 3.2169 3.0358 -1.4425 8 7 3.4615 3.4585 -2.8236 9 6 4.1339 4.6249 -3.0739 10 1 4.4841 5.2330 -2.2530 11 6 4.3661 5.0251 -4.3826 12 7 3.9396 4.2838 -5.3830 13 14 5.2839 6.6159 -4.7239 14 1 5.6532 7.2600 -3.4378 15 1 6.5141 6.3206 -5.5014 16 1 4.4134 7.5320 -5.5038 17 6 2.1389 -1.1671 0.0005 18 8 3.3539 -1.1675 0.0385 19 6 1.4004 -2.4472 -0.0452 20 6 2.1071 -3.6426 -0.1993 21 6 1.4256 -4.8300 -0.2477 22 6 0.0320 -4.8019 -0.1284 23 7 -0.9263 -5.7588 -0.1287 24 6 -2.1023 -5.2018 0.0165 25 8 -3.2767 -5.8698 0.0590 26 7 -1.9681 -3.8483 0.1186 27 1 -2.6866 -3.2067 0.2322 28 6 -0.6191 -3.5596 0.0291 29 7 0.0771 -2.4414 0.0637 30 1 -0.3633 -0.1119 1.0216 31 1 -0.3633 0.9406 -0.4138 32 1 -0.3633 -0.8288 -0.6077 33 1 1.6084 2.0284 0.5139 34 1 3.1498 1.1385 0.5139 35 1 2.7344 -0.2998 -2.1637 36 1 3.4614 0.9591 -3.1913 37 1 4.2318 0.5139 -1.6498 38 1 0.5265 2.6530 -1.6498 39 1 1.2972 2.2085 -3.1912 40 1 0.5705 0.9494 -2.1637 41 1 2.6275 3.7952 -0.9287 42 1 4.1693 2.9059 -0.9285 43 1 3.1472 2.9121 -3.5609 44 1 4.1022 4.5632 -6.2975 45 1 3.1837 -3.6302 -0.2837 46 1 1.9515 -5.7652 -0.3704 47 1 -3.6922 -5.9904 -0.8059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329328365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:44 Heat of formation + Delta-G solvation = 25.277492 kcal Electronic energy + Delta-G solvation = -30638.771606 eV Core-core repulsion = 26437.480597 eV Total energy + Delta-G solvation = -4201.291009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.55244 -41.54388 -39.80954 -38.67530 -37.80964 -36.51221 -35.12887 -34.65873 -32.53918 -32.14976 -30.77864 -28.85954 -28.14845 -27.29360 -26.98232 -25.25282 -24.65058 -23.96564 -22.89981 -21.34154 -20.42211 -19.85410 -19.13100 -19.07226 -18.54459 -18.26993 -17.36510 -17.19991 -16.77984 -16.44790 -16.18452 -15.86172 -15.52774 -15.33526 -15.25378 -14.73844 -14.68859 -14.35488 -14.21355 -14.01131 -13.86090 -13.66246 -13.32614 -13.23333 -13.09305 -12.92850 -12.80993 -12.56176 -12.46754 -12.42885 -12.26894 -12.06997 -11.92216 -11.65542 -11.60631 -11.52088 -11.21153 -10.92624 -10.19530 -10.09822 -9.67732 -9.48718 -8.94717 -7.92651 -5.20045 -0.78820 0.04158 0.92946 1.20982 1.47496 1.48624 1.58636 1.78874 1.92868 2.42764 2.58001 2.69446 3.04065 3.29328 3.40860 3.65441 3.77706 3.85553 3.91867 3.93043 3.98871 4.29444 4.43093 4.47538 4.50459 4.52328 4.57615 4.71976 4.83462 4.88363 4.89699 4.92609 4.94838 4.97286 5.14338 5.18064 5.20519 5.22154 5.36816 5.46903 5.51297 5.55473 5.57523 5.69239 6.24656 6.30100 6.40180 6.41272 6.61801 7.07693 7.36525 8.14125 8.37638 9.31436 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.002094 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.526254 B =13365.556973 C =13600.404347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.585 5.585 3 C 0.132 3.868 4 C -0.076 4.076 5 C -0.110 4.110 6 C -0.126 4.126 7 C 0.163 3.837 8 N -0.739 5.739 9 C -0.240 4.240 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.973 3.027 14 H -0.266 1.266 15 H -0.296 1.296 16 H -0.293 1.293 17 C 0.564 3.436 18 O -0.555 6.555 19 C 0.104 3.896 20 C -0.119 4.119 21 C -0.024 4.024 22 C 0.025 3.975 23 N -0.513 5.513 24 C 0.496 3.504 25 O -0.434 6.434 26 N -0.571 5.571 27 H 0.445 0.555 28 C 0.229 3.771 29 N -0.436 5.436 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.030 0.970 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.066 0.934 41 H 0.030 0.970 42 H 0.013 0.987 43 H 0.376 0.624 44 H 0.250 0.750 45 H 0.163 0.837 46 H 0.174 0.826 47 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.140 -21.237 13.953 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.314 5.314 3 C 0.009 3.991 4 C -0.077 4.077 5 C -0.168 4.168 6 C -0.183 4.183 7 C 0.036 3.964 8 N -0.383 5.383 9 C -0.372 4.372 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.622 5.622 13 Si 0.802 3.198 14 H -0.190 1.190 15 H -0.223 1.223 16 H -0.220 1.220 17 C 0.351 3.649 18 O -0.433 6.433 19 C -0.043 4.043 20 C -0.143 4.143 21 C -0.051 4.051 22 C -0.097 4.097 23 N -0.246 5.246 24 C 0.191 3.809 25 O -0.241 6.241 26 N -0.201 5.201 27 H 0.289 0.711 28 C -0.009 4.009 29 N -0.153 5.153 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.031 0.969 43 H 0.209 0.791 44 H 0.059 0.941 45 H 0.180 0.820 46 H 0.191 0.809 47 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -17.775 -21.262 14.651 31.347 hybrid contribution 0.191 1.104 -1.320 1.732 sum -17.584 -20.158 13.330 29.887 Atomic orbital electron populations 1.22572 0.76820 1.04057 1.03300 1.47702 1.08720 1.04818 1.70190 1.21497 0.97984 0.84630 0.94964 1.20999 0.96074 0.94511 0.96157 1.21566 0.99055 0.97171 0.98994 1.21778 0.95533 1.01404 0.99574 1.20738 0.96077 0.93326 0.86261 1.42591 1.67871 1.25015 1.02792 1.19695 1.26732 0.98744 0.91980 0.90676 1.25547 1.03496 1.02439 0.95560 1.69826 1.53527 1.40685 0.98171 0.85070 0.77489 0.79387 0.77807 1.19036 1.22314 1.21983 1.17964 0.86375 0.83463 0.77091 1.90822 1.13847 1.87011 1.51601 1.20829 0.87912 0.94301 1.01226 1.21654 1.02862 0.90549 0.99210 1.20696 0.89538 0.99920 0.94923 1.19952 0.95344 0.89763 1.04630 1.70662 0.97314 1.31184 1.25468 1.20311 0.87814 0.78172 0.94641 1.84812 1.28933 1.72029 1.38279 1.42960 1.06053 1.08817 1.62251 0.71121 1.18813 0.85923 0.91694 1.04498 1.66909 1.06844 1.26864 1.14638 0.91648 0.90538 0.88031 0.87691 0.90648 0.93443 0.95126 0.93883 0.91679 0.94949 0.91487 0.95220 0.96858 0.79098 0.94129 0.81964 0.80858 0.69360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 7.99 127.77 1.02 2.34 16 2 N -0.58 -14.08 2.40 -850.16 -2.04 -16.12 16 3 C 0.13 3.52 4.58 86.38 0.40 3.92 16 4 C -0.08 -2.52 0.60 -52.18 -0.03 -2.55 16 5 C -0.11 -4.13 7.00 71.98 0.50 -3.62 16 6 C -0.13 -3.89 7.07 71.98 0.51 -3.38 16 7 C 0.16 6.67 5.15 86.38 0.44 7.11 16 8 N -0.74 -38.41 5.00 -343.46 -1.72 -40.13 16 9 C -0.24 -13.67 9.99 84.03 0.84 -12.83 16 10 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 11 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 12 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 13 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 16 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 17 C 0.56 15.33 5.99 86.79 0.52 15.85 16 18 O -0.55 -18.44 14.24 -3.92 -0.06 -18.49 16 19 C 0.10 2.36 6.62 41.91 0.28 2.63 16 20 C -0.12 -2.35 9.55 22.34 0.21 -2.14 16 21 C -0.02 -0.40 10.16 22.38 0.23 -0.17 16 22 C 0.02 0.47 7.24 39.70 0.29 0.76 16 23 N -0.51 -9.28 11.30 -306.03 -3.46 -12.74 16 24 C 0.50 5.82 9.39 179.70 1.69 7.51 16 25 O -0.43 -2.19 13.62 -84.60 -1.15 -3.35 16 26 N -0.57 -5.96 6.25 -307.03 -1.92 -7.88 16 27 H 0.44 1.78 8.96 -92.71 -0.83 0.95 16 28 C 0.23 3.98 8.46 134.00 1.13 5.11 16 29 N -0.44 -8.45 6.02 -181.67 -1.09 -9.54 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.08 1.23 6.34 -2.39 -0.02 1.21 16 32 H 0.10 1.83 5.27 -2.95 -0.02 1.81 16 33 H 0.10 2.26 8.07 -2.38 -0.02 2.24 16 34 H 0.08 2.22 7.39 -2.39 -0.02 2.20 16 35 H 0.05 1.64 6.18 -2.39 -0.01 1.63 16 36 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 37 H 0.04 1.70 7.77 -2.39 -0.02 1.69 16 38 H 0.06 1.80 8.07 -2.39 -0.02 1.78 16 39 H 0.03 1.23 6.86 -2.38 -0.02 1.21 16 40 H 0.07 1.77 6.09 -2.39 -0.01 1.76 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.38 20.80 5.36 -92.71 -0.50 20.30 16 44 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.16 3.05 7.63 -2.91 -0.02 3.03 16 46 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 47 H 0.44 -2.73 9.06 -74.06 -0.67 -3.40 16 Total: -1.00 -79.11 376.56 -1.58 -80.68 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.94 Total: 22.39 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 8.49 Total: 16.39 kcal Atomic # 7 Polarization: -136.85 SS G_CDS: -9.95 Total: -146.80 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -1.21 Total: -21.84 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -79.11 -1.58 -80.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329328365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.959 kcal (2) G-P(sol) polarization free energy of solvation -79.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds