Wall clock time and date at job start Wed Apr 1 2020 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21601 * 119.99523 * 359.97438 * 18 17 5 20 20 C 1.47547 * 120.00121 * 179.97438 * 18 17 5 21 21 C 1.46397 * 120.25241 * 0.02562 * 20 18 17 22 22 C 1.35590 * 119.10371 * 179.97438 * 21 20 18 23 23 C 1.41172 * 119.48516 * 0.02562 * 22 21 20 24 24 N 1.32057 * 132.79200 * 179.97438 * 23 22 21 25 25 N 1.28595 * 109.72226 * 180.02562 * 24 23 22 26 26 C 1.31091 * 110.34537 * 359.97438 * 25 24 23 27 27 O 1.35691 * 126.33140 * 179.97438 * 26 25 24 28 28 N 1.36528 * 107.33649 * 0.02562 * 26 25 24 29 29 C 1.36030 * 133.10689 * 180.30921 * 28 26 25 30 30 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 32 32 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 33 33 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 34 34 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 36 36 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 38 38 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 39 39 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 40 40 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 44 44 H 1.08004 * 120.44632 * 359.97438 * 21 20 18 45 45 H 1.08005 * 120.25815 * 180.02562 * 22 21 20 46 46 H 0.96700 * 114.00502 * 270.00015 * 27 26 25 47 47 H 1.07995 * 119.79477 * 359.93389 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.3558 6.0853 -1.2500 15 1 9.9653 7.5073 0.6751 16 1 10.3874 5.1393 0.9827 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6985 4.0740 -0.4335 20 6 2.0860 4.7656 -2.6293 21 6 3.0171 4.8069 -3.7583 22 6 2.6347 5.4185 -4.9064 23 6 1.3516 6.0013 -4.9892 24 7 0.7204 6.6480 -5.9522 25 7 -0.4505 6.9932 -5.5481 26 6 -0.6429 6.5939 -4.3144 27 8 -1.7629 6.7859 -3.5727 28 7 0.4923 5.9502 -3.9133 29 6 0.8528 5.3366 -2.7541 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0970 41 1 5.4810 4.9908 -0.1315 42 1 7.4035 7.7129 -0.2771 43 1 4.3127 3.5646 -1.9981 44 1 3.9953 4.3563 -3.6777 45 1 3.3066 5.4595 -5.7511 46 1 -1.7590 7.6053 -3.0592 47 1 0.1605 5.3050 -1.9258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329891342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:27 Heat of formation + Delta-G solvation = 15.761695 kcal Electronic energy + Delta-G solvation = -30573.690918 eV Core-core repulsion = 26371.987273 eV Total energy + Delta-G solvation = -4201.703645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.76596 -41.32031 -39.12670 -38.76879 -37.78803 -36.23143 -35.32838 -34.78349 -33.17871 -32.42006 -31.45886 -30.17046 -28.72589 -26.29048 -25.61447 -24.88771 -23.72696 -23.71834 -22.59303 -21.77642 -21.58514 -20.53975 -19.46932 -19.16350 -18.40565 -18.12541 -17.80553 -17.36902 -16.70975 -16.37283 -16.08165 -16.02804 -15.77406 -15.49009 -15.15548 -15.09965 -14.66170 -14.45305 -14.16514 -13.92597 -13.67934 -13.61479 -13.48759 -13.39845 -13.13701 -12.86111 -12.80800 -12.77608 -12.48055 -12.27047 -12.10812 -11.98469 -11.84671 -11.82080 -11.70097 -11.38954 -11.34928 -11.11016 -10.91145 -10.77704 -9.97693 -9.34042 -8.96324 -7.91307 -5.19520 -0.74241 -0.34106 0.60912 1.08092 1.51517 1.52662 1.60139 1.69987 2.04597 2.35101 2.53139 2.59153 2.92285 3.24193 3.34318 3.44209 3.56867 3.64195 3.68010 4.01369 4.11438 4.13239 4.28618 4.35364 4.37335 4.39206 4.58985 4.62217 4.64612 4.72690 4.84429 4.89226 4.97144 4.97848 5.02998 5.09161 5.11899 5.17286 5.26472 5.34499 5.36169 5.42954 5.55782 5.58465 5.64245 6.21642 6.29790 6.49626 7.13225 7.13971 7.38445 8.12132 8.35224 9.31231 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007297 B = 0.003598 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3836.101745 B = 7779.161163 C =10865.451501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.118 4.118 5 C 0.149 3.851 6 H 0.065 0.935 7 C 0.144 3.856 8 N -0.742 5.742 9 C -0.240 4.240 10 H 0.078 0.922 11 C -0.068 4.068 12 N -0.965 5.965 13 Si 0.966 3.034 14 H -0.286 1.286 15 H -0.303 1.303 16 H -0.272 1.272 17 N -0.692 5.692 18 C 0.572 3.428 19 O -0.559 6.559 20 C -0.150 4.150 21 C -0.049 4.049 22 C -0.082 4.082 23 C 0.212 3.788 24 N -0.303 5.303 25 N -0.270 5.270 26 C 0.327 3.673 27 O -0.427 6.427 28 N -0.407 5.407 29 C 0.138 3.862 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.037 0.963 41 H 0.375 0.625 42 H 0.248 0.752 43 H 0.411 0.589 44 H 0.179 0.821 45 H 0.194 0.806 46 H 0.430 0.570 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 -10.037 -4.885 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.143 4.143 4 C -0.157 4.157 5 C 0.044 3.956 6 H 0.083 0.917 7 C 0.017 3.983 8 N -0.385 5.385 9 C -0.372 4.372 10 H 0.096 0.904 11 C -0.261 4.261 12 N -0.616 5.616 13 Si 0.796 3.204 14 H -0.213 1.213 15 H -0.230 1.230 16 H -0.197 1.197 17 N -0.343 5.343 18 C 0.358 3.642 19 O -0.439 6.439 20 C -0.157 4.157 21 C -0.073 4.073 22 C -0.103 4.103 23 C -0.039 4.039 24 N -0.149 5.149 25 N -0.119 5.119 26 C 0.026 3.974 27 O -0.229 6.229 28 N -0.099 5.099 29 C 0.014 3.986 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.208 0.792 42 H 0.057 0.943 43 H 0.248 0.752 44 H 0.196 0.804 45 H 0.211 0.789 46 H 0.292 0.708 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.906 -9.873 -5.755 17.999 hybrid contribution 1.160 1.004 1.397 2.074 sum -12.746 -8.869 -4.358 16.128 Atomic orbital electron populations 1.21743 0.96065 1.01692 1.01249 1.21546 0.95805 0.96331 1.02276 1.21564 0.94758 0.96457 1.01553 1.21930 0.95878 0.94132 1.03777 1.21186 0.94234 0.94111 0.86031 0.91670 1.21136 0.90771 0.86876 0.99492 1.42510 1.04420 1.03844 1.87744 1.19594 0.85146 0.92489 1.39937 0.90378 1.25426 1.01184 0.95796 1.03710 1.69803 1.34407 0.98948 1.58460 0.85258 0.81036 0.76526 0.77615 1.21290 1.23014 1.19671 1.45751 1.15322 1.55935 1.17287 1.17599 0.82331 0.78032 0.86204 1.90807 1.52151 1.60492 1.40450 1.20606 0.94493 1.04227 0.96341 1.22580 0.99529 0.95660 0.89543 1.20538 0.90640 0.97884 1.01197 1.22582 0.94595 1.02024 0.84672 1.74867 1.00029 1.17012 1.23039 1.74436 1.10999 1.19142 1.07302 1.21896 0.83646 1.01127 0.90685 1.84969 1.28037 1.48733 1.61204 1.44040 1.14012 1.38915 1.12913 1.21852 0.97341 0.91874 0.87566 0.91845 0.93366 0.93619 0.91614 0.91545 0.93469 0.93098 0.90140 0.89805 0.93787 0.94531 0.79247 0.94272 0.75165 0.80386 0.78893 0.70761 0.78876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 71.98 0.71 -1.95 16 2 C -0.12 -2.20 5.93 30.59 0.18 -2.02 16 3 C -0.11 -2.36 3.81 30.60 0.12 -2.24 16 4 C -0.12 -2.50 4.89 30.60 0.15 -2.35 16 5 C 0.15 4.08 2.41 44.99 0.11 4.19 16 6 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 7 C 0.14 4.69 5.82 86.38 0.50 5.20 16 8 N -0.74 -32.88 5.43 -343.46 -1.87 -34.74 16 9 C -0.24 -12.10 9.99 84.03 0.84 -11.26 16 10 H 0.08 3.77 7.83 -2.91 -0.02 3.74 16 11 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 12 N -0.97 -55.46 13.06 21.65 0.28 -55.18 16 13 Si 0.97 43.45 29.55 68.60 2.03 45.48 16 14 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 N -0.69 -17.45 4.43 -445.68 -1.97 -19.43 16 18 C 0.57 15.03 6.34 86.70 0.55 15.58 16 19 O -0.56 -17.34 13.43 -4.03 -0.05 -17.40 16 20 C -0.15 -3.33 5.98 -19.11 -0.11 -3.45 16 21 C -0.05 -0.89 9.73 23.78 0.23 -0.66 16 22 C -0.08 -1.55 10.09 22.38 0.23 -1.32 16 23 C 0.21 5.30 7.91 134.08 1.06 6.36 16 24 N -0.30 -8.95 12.28 -55.02 -0.68 -9.63 16 25 N -0.27 -7.91 12.19 -173.29 -2.11 -10.02 16 26 C 0.33 7.93 9.38 179.61 1.69 9.62 16 27 O -0.43 -7.41 13.65 -90.10 -1.23 -8.64 16 28 N -0.41 -9.61 2.95 -465.99 -1.38 -10.99 16 29 C 0.14 3.00 10.54 83.63 0.88 3.88 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.88 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.24 7.84 -2.39 -0.02 1.22 16 36 H 0.05 1.25 5.64 -2.39 -0.01 1.24 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.38 18.10 7.33 -92.71 -0.68 17.42 16 42 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 43 H 0.41 9.28 6.70 -92.70 -0.62 8.66 16 44 H 0.18 2.50 6.58 -2.91 -0.02 2.48 16 45 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 46 H 0.43 2.81 9.06 -74.06 -0.67 2.13 16 47 H 0.19 3.76 7.58 -2.91 -0.02 3.74 16 Total: -1.00 -71.10 392.34 -0.32 -71.41 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.94 Total: 32.76 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 7.60 Total: 16.38 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -7.72 Total: -139.99 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.28 Total: -26.04 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.10 -0.32 -71.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329891342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.174 kcal (2) G-P(sol) polarization free energy of solvation -71.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds