Wall clock time and date at job start Wed Apr 1 2020 04:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00284 * 2 1 4 4 C 1.52998 * 109.47140 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46910 * 64.99863 * 4 3 2 6 6 C 1.36930 * 120.00234 * 274.46105 * 5 4 3 7 7 H 1.07999 * 120.00217 * 146.17093 * 6 5 4 8 8 C 1.38810 * 119.99964 * 326.17399 * 6 5 4 9 9 N 1.31617 * 119.99983 * 335.30723 * 8 6 5 10 10 Si 1.86809 * 119.99984 * 155.31122 * 8 6 5 11 11 H 1.48503 * 109.47109 * 90.00055 * 10 8 6 12 12 H 1.48500 * 109.46919 * 209.99564 * 10 8 6 13 13 H 1.48497 * 109.46786 * 329.99824 * 10 8 6 14 14 C 1.46504 * 119.99885 * 94.46769 * 5 4 3 15 15 C 1.53004 * 109.46977 * 269.99839 * 14 5 4 16 16 N 1.46493 * 109.47297 * 179.97438 * 15 14 5 17 17 C 1.34777 * 120.00274 * 180.27323 * 16 15 14 18 18 O 1.21574 * 119.99853 * 359.72305 * 17 16 15 19 19 C 1.47686 * 119.99998 * 179.72852 * 17 16 15 20 20 C 1.39979 * 120.38704 * 359.97438 * 19 17 16 21 21 N 1.31390 * 121.16270 * 180.02562 * 20 19 17 22 22 C 1.32545 * 121.78864 * 0.02562 * 21 20 19 23 23 N 1.37584 * 133.56625 * 179.97438 * 22 21 20 24 24 H 0.97007 * 126.23798 * 0.02562 * 23 22 21 25 25 C 1.36169 * 107.52748 * 179.97438 * 23 22 21 26 26 C 1.50692 * 124.94491 * 179.97438 * 25 23 22 27 27 N 1.30061 * 110.11110 * 0.02562 * 25 23 22 28 28 C 1.35780 * 109.43087 * 359.97438 * 27 25 23 29 29 C 1.39492 * 133.73721 * 180.33522 * 28 27 25 30 30 H 1.08999 * 109.46754 * 59.99879 * 1 2 3 31 31 H 1.08995 * 109.47407 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46823 * 300.00401 * 1 2 3 33 33 H 1.08996 * 109.46900 * 60.00020 * 3 2 1 34 34 H 1.09002 * 109.46860 * 299.99702 * 3 2 1 35 35 H 1.08997 * 109.47070 * 305.00313 * 4 3 2 36 36 H 1.09004 * 109.47227 * 184.99652 * 4 3 2 37 37 H 0.96999 * 119.99862 * 180.02562 * 9 8 6 38 38 H 1.08991 * 109.47255 * 149.99625 * 14 5 4 39 39 H 1.09004 * 109.47416 * 29.99216 * 14 5 4 40 40 H 1.08996 * 109.46958 * 59.99490 * 15 14 5 41 41 H 1.09004 * 109.46539 * 299.99914 * 15 14 5 42 42 H 0.97007 * 120.00036 * 0.02562 * 16 15 14 43 43 H 1.08003 * 119.41953 * 359.97438 * 20 19 17 44 44 H 1.08999 * 109.47641 * 270.02177 * 26 25 23 45 45 H 1.09010 * 109.47036 * 30.02266 * 26 25 23 46 46 H 1.09003 * 109.46955 * 150.01957 * 26 25 23 47 47 H 1.07998 * 120.97591 * 359.90871 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0103 -0.8004 -1.3639 7 1 3.7920 -1.2693 -2.3120 8 6 4.3249 -1.5807 -0.2599 9 7 5.0414 -1.0744 0.7212 10 14 3.7314 -3.3496 -0.1666 11 1 4.7463 -4.2451 -0.7776 12 1 3.5279 -3.7291 1.2546 13 1 2.4484 -3.4806 -0.9026 14 6 4.3820 1.4027 -2.3815 15 6 3.1636 1.7013 -3.2576 16 7 3.5688 2.5406 -4.3879 17 6 2.6542 2.9364 -5.2952 18 8 1.4939 2.5927 -5.1785 19 6 3.0615 3.7875 -6.4314 20 6 4.3952 4.1883 -6.5734 21 7 4.7742 4.9457 -7.5778 22 6 3.9177 5.3644 -8.4987 23 7 4.0425 6.1453 -9.6246 24 1 4.8599 6.5517 -9.9529 25 6 2.8098 6.2427 -10.1947 26 6 2.4989 7.0122 -11.4525 27 7 1.9395 5.5759 -9.4951 28 6 2.5581 5.0059 -8.4292 29 6 2.1214 4.1975 -7.3796 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8508 0.5684 0.8426 36 1 3.9786 2.1765 0.0902 37 1 5.2615 -1.6198 1.4926 38 1 5.1340 0.8788 -2.9714 39 1 4.7994 2.3381 -2.0088 40 1 2.4116 2.2251 -2.6677 41 1 2.7463 0.7659 -3.6304 42 1 4.4947 2.8145 -4.4813 43 1 5.1253 3.8700 -5.8440 44 1 2.2312 8.0369 -11.1949 45 1 3.3751 7.0177 -12.1010 46 1 1.6657 6.5385 -11.9716 47 1 1.0860 3.9012 -7.2998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332914138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:58 Heat of formation + Delta-G solvation = 32.517111 kcal Electronic energy + Delta-G solvation = -29665.073138 eV Core-core repulsion = 25464.096062 eV Total energy + Delta-G solvation = -4200.977076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.78030 -39.90801 -38.17913 -37.21336 -35.76248 -34.27839 -34.00197 -32.10611 -31.72291 -31.27816 -29.56069 -28.55099 -27.20279 -25.57777 -24.58216 -23.62710 -23.28119 -21.88800 -21.44614 -20.74888 -20.16419 -18.78897 -18.20212 -16.89280 -16.76203 -16.34185 -16.31594 -15.72072 -15.24864 -15.12341 -14.86421 -14.52405 -14.12956 -14.05477 -14.02800 -13.91508 -13.62636 -13.52183 -13.33563 -13.20971 -13.00415 -12.69225 -12.37703 -11.91914 -11.76993 -11.52292 -11.43054 -11.15873 -10.83395 -10.73292 -10.63353 -10.53391 -10.14486 -9.98798 -9.92794 -9.68154 -9.50330 -9.25281 -8.88730 -8.79755 -8.61686 -8.37250 -6.60454 -5.69932 -3.22465 0.39982 0.52545 2.04477 2.27988 2.85499 3.15669 3.47629 3.55085 3.60578 3.64342 3.65881 3.92424 4.23401 4.53164 4.55488 4.59229 4.69408 4.76514 4.78243 4.87274 5.04353 5.25679 5.39479 5.42011 5.56236 5.69836 5.76618 5.79791 5.84122 5.87921 5.94360 6.10858 6.13308 6.20942 6.31268 6.33235 6.57327 6.63327 6.65172 6.67490 6.70901 6.93781 7.26907 7.41861 7.65593 7.69934 7.91233 8.15595 8.32629 8.58227 9.23389 9.89824 10.40001 11.31734 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.002005 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.320014 B =13965.032968 C =14446.622247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.136 3.864 5 N -0.570 5.570 6 C -0.244 4.244 7 H 0.058 0.942 8 C 0.022 3.978 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.292 1.292 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.137 3.863 15 C 0.095 3.905 16 N -0.716 5.716 17 C 0.562 3.438 18 O -0.536 6.536 19 C -0.192 4.192 20 C 0.174 3.826 21 N -0.484 5.484 22 C 0.255 3.745 23 N -0.585 5.585 24 H 0.429 0.571 25 C 0.294 3.706 26 C -0.077 4.077 27 N -0.476 5.476 28 C -0.005 4.005 29 C 0.044 3.956 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.029 0.971 35 H 0.108 0.892 36 H 0.041 0.959 37 H 0.253 0.747 38 H 0.056 0.944 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.396 0.604 43 H 0.173 0.827 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.359 17.620 -19.076 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.374 4.374 7 H 0.076 0.924 8 C -0.177 4.177 9 N -0.533 5.533 10 Si 0.728 3.272 11 H -0.219 1.219 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.009 3.991 15 C -0.030 4.030 16 N -0.367 5.367 17 C 0.347 3.653 18 O -0.414 6.414 19 C -0.201 4.201 20 C 0.005 3.995 21 N -0.197 5.197 22 C 0.019 3.981 23 N -0.201 5.201 24 H 0.268 0.732 25 C 0.026 3.974 26 C -0.136 4.136 27 N -0.197 5.197 28 C -0.124 4.124 29 C 0.017 3.983 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.125 0.875 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.230 0.770 43 H 0.189 0.811 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.120 0.880 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.051 17.260 -19.067 25.801 hybrid contribution 0.185 -0.443 0.188 0.515 sum -1.866 16.818 -18.879 25.352 Atomic orbital electron populations 1.22635 0.84350 1.01437 0.98428 1.88232 1.16442 1.27429 1.94797 1.23454 0.98629 0.84326 0.96875 1.21170 0.87924 0.96554 0.93373 1.43584 1.74030 1.02388 1.08962 1.18799 1.40939 0.80682 0.96935 0.92397 1.24875 0.96904 0.97668 0.98276 1.69967 1.36319 1.36738 1.10283 0.86389 0.79071 0.84912 0.76813 1.21943 1.21743 1.20283 1.21016 0.92725 0.94875 0.90519 1.22558 1.00807 0.93705 0.85954 1.46014 1.11377 1.52632 1.26686 1.17794 0.85746 0.80013 0.81721 1.90799 1.18242 1.56660 1.75681 1.20791 0.95225 1.04907 0.99133 1.22782 0.93548 0.90434 0.92773 1.66397 1.36851 1.13816 1.02609 1.19069 0.92256 0.96256 0.90552 1.42715 1.12047 1.43876 1.21417 0.73155 1.23754 0.79285 0.97356 0.96960 1.20446 1.04157 0.99382 0.89601 1.70477 1.30719 1.13165 1.05337 1.19566 0.91381 1.03692 0.97777 1.20871 1.00841 0.88932 0.87690 0.95159 0.90811 0.95638 0.95899 0.95267 0.87465 0.94078 0.93760 0.92545 0.94210 0.92095 0.91263 0.76973 0.81062 0.88886 0.89760 0.88043 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -8.01 9.96 -35.23 -0.35 -8.36 16 3 C 0.05 0.96 6.28 37.16 0.23 1.19 16 4 C 0.14 3.09 5.83 -4.04 -0.02 3.06 16 5 N -0.57 -13.45 2.45 -173.24 -0.43 -13.87 16 6 C -0.24 -6.54 8.74 -15.06 -0.13 -6.67 16 7 H 0.06 1.58 7.94 -52.49 -0.42 1.16 16 8 C 0.02 0.62 4.95 -17.43 -0.09 0.53 16 9 N -0.89 -25.31 11.36 55.49 0.63 -24.68 16 10 Si 0.90 22.40 29.62 -169.99 -5.04 17.37 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 14 C 0.14 2.58 5.82 -4.04 -0.02 2.55 16 15 C 0.09 1.68 6.00 -4.04 -0.02 1.65 16 16 N -0.72 -9.97 5.51 -61.30 -0.34 -10.31 16 17 C 0.56 8.53 7.77 -12.40 -0.10 8.43 16 18 O -0.54 -10.26 16.40 5.30 0.09 -10.17 16 19 C -0.19 -2.43 5.89 -104.85 -0.62 -3.04 16 20 C 0.17 1.86 10.69 -17.09 -0.18 1.67 16 21 N -0.48 -5.57 10.37 -11.96 -0.12 -5.69 16 22 C 0.26 2.90 8.45 -155.63 -1.31 1.58 16 23 N -0.59 -4.50 6.20 -9.44 -0.06 -4.55 16 24 H 0.43 1.80 8.96 -40.82 -0.37 1.44 16 25 C 0.29 2.30 8.08 -154.75 -1.25 1.05 16 26 C -0.08 -0.22 10.51 36.00 0.38 0.16 16 27 N -0.48 -5.55 11.29 -8.21 -0.09 -5.64 16 28 C 0.00 -0.06 7.23 -84.69 -0.61 -0.67 16 29 C 0.04 0.58 9.75 -38.58 -0.38 0.20 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.03 0.58 6.47 -51.93 -0.34 0.25 16 35 H 0.11 2.82 5.37 -51.93 -0.28 2.55 16 36 H 0.04 0.83 7.84 -51.93 -0.41 0.43 16 37 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 39 H 0.04 0.67 7.86 -51.93 -0.41 0.27 16 40 H 0.06 1.15 6.47 -51.93 -0.34 0.82 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.40 4.15 6.51 -40.82 -0.27 3.89 16 43 H 0.17 1.30 6.39 -52.48 -0.34 0.96 16 44 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.08 0.04 8.14 -51.92 -0.42 -0.39 16 46 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.16 2.04 7.72 -52.49 -0.41 1.63 16 LS Contribution 394.50 15.07 5.95 5.95 Total: -1.00 -35.91 394.50 -9.27 -45.18 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.49 Total: 1.45 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -3.01 Total: 13.34 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -0.41 Total: -64.75 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.26 Total: -18.53 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.04 Total: 17.37 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.91 -9.27 -45.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332914138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.693 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds