Wall clock time and date at job start Wed Apr 1 2020 04:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00284 * 2 1 4 4 C 1.52998 * 109.47140 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46910 * 64.99863 * 4 3 2 6 6 C 1.36930 * 120.00234 * 274.46105 * 5 4 3 7 7 H 1.07999 * 120.00217 * 146.17093 * 6 5 4 8 8 C 1.38810 * 119.99964 * 326.17399 * 6 5 4 9 9 N 1.31617 * 119.99983 * 335.30723 * 8 6 5 10 10 Si 1.86809 * 119.99984 * 155.31122 * 8 6 5 11 11 H 1.48503 * 109.47109 * 90.00055 * 10 8 6 12 12 H 1.48500 * 109.46919 * 209.99564 * 10 8 6 13 13 H 1.48497 * 109.46786 * 329.99824 * 10 8 6 14 14 C 1.46504 * 119.99885 * 94.46769 * 5 4 3 15 15 C 1.53004 * 109.46977 * 269.99839 * 14 5 4 16 16 N 1.46493 * 109.47297 * 179.97438 * 15 14 5 17 17 C 1.34777 * 120.00274 * 180.27323 * 16 15 14 18 18 O 1.21574 * 119.99853 * 359.72305 * 17 16 15 19 19 C 1.47686 * 119.99998 * 179.72852 * 17 16 15 20 20 C 1.39979 * 120.38704 * 359.97438 * 19 17 16 21 21 N 1.31390 * 121.16270 * 180.02562 * 20 19 17 22 22 C 1.32545 * 121.78864 * 0.02562 * 21 20 19 23 23 N 1.37584 * 133.56625 * 179.97438 * 22 21 20 24 24 H 0.97007 * 126.23798 * 0.02562 * 23 22 21 25 25 C 1.36169 * 107.52748 * 179.97438 * 23 22 21 26 26 C 1.50692 * 124.94491 * 179.97438 * 25 23 22 27 27 N 1.30061 * 110.11110 * 0.02562 * 25 23 22 28 28 C 1.35780 * 109.43087 * 359.97438 * 27 25 23 29 29 C 1.39492 * 133.73721 * 180.33522 * 28 27 25 30 30 H 1.08999 * 109.46754 * 59.99879 * 1 2 3 31 31 H 1.08995 * 109.47407 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46823 * 300.00401 * 1 2 3 33 33 H 1.08996 * 109.46900 * 60.00020 * 3 2 1 34 34 H 1.09002 * 109.46860 * 299.99702 * 3 2 1 35 35 H 1.08997 * 109.47070 * 305.00313 * 4 3 2 36 36 H 1.09004 * 109.47227 * 184.99652 * 4 3 2 37 37 H 0.96999 * 119.99862 * 180.02562 * 9 8 6 38 38 H 1.08991 * 109.47255 * 149.99625 * 14 5 4 39 39 H 1.09004 * 109.47416 * 29.99216 * 14 5 4 40 40 H 1.08996 * 109.46958 * 59.99490 * 15 14 5 41 41 H 1.09004 * 109.46539 * 299.99914 * 15 14 5 42 42 H 0.97007 * 120.00036 * 0.02562 * 16 15 14 43 43 H 1.08003 * 119.41953 * 359.97438 * 20 19 17 44 44 H 1.08999 * 109.47641 * 270.02177 * 26 25 23 45 45 H 1.09010 * 109.47036 * 30.02266 * 26 25 23 46 46 H 1.09003 * 109.46955 * 150.01957 * 26 25 23 47 47 H 1.07998 * 120.97591 * 359.90871 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0103 -0.8004 -1.3639 7 1 3.7920 -1.2693 -2.3120 8 6 4.3249 -1.5807 -0.2599 9 7 5.0414 -1.0744 0.7212 10 14 3.7314 -3.3496 -0.1666 11 1 4.7463 -4.2451 -0.7776 12 1 3.5279 -3.7291 1.2546 13 1 2.4484 -3.4806 -0.9026 14 6 4.3820 1.4027 -2.3815 15 6 3.1636 1.7013 -3.2576 16 7 3.5688 2.5406 -4.3879 17 6 2.6542 2.9364 -5.2952 18 8 1.4939 2.5927 -5.1785 19 6 3.0615 3.7875 -6.4314 20 6 4.3952 4.1883 -6.5734 21 7 4.7742 4.9457 -7.5778 22 6 3.9177 5.3644 -8.4987 23 7 4.0425 6.1453 -9.6246 24 1 4.8599 6.5517 -9.9529 25 6 2.8098 6.2427 -10.1947 26 6 2.4989 7.0122 -11.4525 27 7 1.9395 5.5759 -9.4951 28 6 2.5581 5.0059 -8.4292 29 6 2.1214 4.1975 -7.3796 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8508 0.5684 0.8426 36 1 3.9786 2.1765 0.0902 37 1 5.2615 -1.6198 1.4926 38 1 5.1340 0.8788 -2.9714 39 1 4.7994 2.3381 -2.0088 40 1 2.4116 2.2251 -2.6677 41 1 2.7463 0.7659 -3.6304 42 1 4.4947 2.8145 -4.4813 43 1 5.1253 3.8700 -5.8440 44 1 2.2312 8.0369 -11.1949 45 1 3.3751 7.0177 -12.1010 46 1 1.6657 6.5385 -11.9716 47 1 1.0860 3.9012 -7.2998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332914138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:57 Heat of formation + Delta-G solvation = 6.519796 kcal Electronic energy + Delta-G solvation = -29666.200466 eV Core-core repulsion = 25464.096062 eV Total energy + Delta-G solvation = -4202.104404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.55086 -41.05684 -39.19052 -38.83876 -37.38783 -35.76925 -34.84984 -33.41531 -32.63192 -32.47705 -31.02441 -29.62573 -28.56354 -27.14049 -25.98419 -24.99800 -24.13906 -23.28215 -22.31197 -22.16334 -21.59593 -19.59108 -19.27159 -18.60720 -17.82822 -17.44109 -17.20475 -17.07824 -16.72747 -16.55842 -16.28678 -16.28104 -15.62945 -15.37129 -15.07707 -15.02740 -14.72461 -14.51113 -14.39564 -14.25918 -14.17992 -13.56156 -13.39801 -13.30856 -13.02532 -12.96901 -12.67504 -12.45006 -12.36909 -12.35508 -12.28234 -12.21643 -11.91061 -11.69293 -11.50655 -11.33340 -10.46715 -10.40748 -10.35935 -10.20970 -9.94977 -9.63869 -8.55588 -7.73794 -5.27980 -0.51028 -0.33514 1.37684 1.46924 1.52002 1.55177 1.62327 1.76069 1.99612 2.61451 2.67758 2.89888 3.19872 3.23243 3.39155 3.49066 3.59213 3.68834 3.84508 3.89241 4.15404 4.27502 4.35474 4.42455 4.44543 4.53119 4.60610 4.72573 4.73992 4.76229 4.77623 4.79468 4.83100 4.87155 4.93393 4.99365 5.11617 5.15898 5.23047 5.28932 5.48090 5.76194 5.87212 6.05086 6.47962 6.48804 6.55637 6.62862 6.68843 7.15068 7.26501 7.96066 8.41800 9.23232 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.002005 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.320014 B =13965.032968 C =14446.622247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.052 3.948 4 C 0.134 3.866 5 N -0.586 5.586 6 C -0.239 4.239 7 H 0.045 0.955 8 C -0.019 4.019 9 N -0.912 5.912 10 Si 0.941 3.059 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.284 1.284 14 C 0.140 3.860 15 C 0.117 3.883 16 N -0.700 5.700 17 C 0.566 3.434 18 O -0.582 6.582 19 C -0.196 4.196 20 C 0.180 3.820 21 N -0.486 5.486 22 C 0.247 3.753 23 N -0.571 5.571 24 H 0.446 0.554 25 C 0.313 3.687 26 C -0.076 4.076 27 N -0.521 5.521 28 C -0.023 4.023 29 C 0.030 3.970 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.248 0.752 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.037 0.963 42 H 0.416 0.584 43 H 0.204 0.796 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.103 0.897 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 19.852 -20.936 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.007 3.993 5 N -0.306 5.306 6 C -0.370 4.370 7 H 0.063 0.937 8 C -0.216 4.216 9 N -0.557 5.557 10 Si 0.771 3.229 11 H -0.214 1.214 12 H -0.222 1.222 13 H -0.209 1.209 14 C 0.013 3.987 15 C -0.009 4.009 16 N -0.353 5.353 17 C 0.353 3.647 18 O -0.463 6.463 19 C -0.204 4.204 20 C 0.011 3.989 21 N -0.199 5.199 22 C 0.009 3.991 23 N -0.188 5.188 24 H 0.290 0.710 25 C 0.045 3.955 26 C -0.134 4.134 27 N -0.243 5.243 28 C -0.143 4.143 29 C 0.002 3.998 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.254 0.746 43 H 0.220 0.780 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.122 0.878 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.074 19.536 -20.971 28.681 hybrid contribution -0.157 -1.002 0.595 1.176 sum -1.231 18.535 -20.375 27.571 Atomic orbital electron populations 1.22789 0.82083 1.02401 0.99809 1.88156 1.19100 1.28753 1.95122 1.23339 0.97207 0.83954 0.98126 1.21129 0.89483 0.96786 0.91852 1.43731 1.74556 1.01931 1.10378 1.18844 1.39355 0.82511 0.96242 0.93691 1.25317 0.97778 0.99980 0.98539 1.70057 1.37698 1.37372 1.10609 0.85711 0.78374 0.82594 0.76221 1.21418 1.22177 1.20941 1.21083 0.92961 0.95348 0.89290 1.22018 0.99798 0.92659 0.86461 1.45719 1.12363 1.51730 1.25453 1.18112 0.85040 0.79515 0.82021 1.90776 1.20246 1.58457 1.76792 1.20504 0.96224 1.05410 0.98310 1.23185 0.93044 0.89658 0.93062 1.66523 1.36595 1.13997 1.02785 1.19330 0.91809 0.96553 0.91393 1.42772 1.12987 1.42903 1.20117 0.71006 1.24751 0.78507 0.95204 0.96989 1.20753 1.05729 0.99391 0.87570 1.70492 1.32285 1.15330 1.06152 1.19709 0.92381 1.04027 0.98134 1.20859 1.00534 0.89797 0.88617 0.94585 0.90188 0.93295 0.93624 0.94750 0.90901 0.91764 0.94277 0.92407 0.91336 0.93176 0.94493 0.74613 0.77967 0.86962 0.86568 0.87817 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -17.81 9.96 -148.98 -1.48 -19.29 16 3 C 0.05 2.11 6.28 71.98 0.45 2.57 16 4 C 0.13 5.99 5.83 86.38 0.50 6.49 16 5 N -0.59 -27.46 2.45 -701.99 -1.72 -29.18 16 6 C -0.24 -12.91 8.74 84.03 0.73 -12.17 16 7 H 0.05 2.50 7.94 -2.91 -0.02 2.48 16 8 C -0.02 -1.06 4.95 84.86 0.42 -0.64 16 9 N -0.91 -52.52 11.36 21.65 0.25 -52.28 16 10 Si 0.94 46.64 29.62 68.60 2.03 48.68 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 14 C 0.14 5.10 5.82 86.38 0.50 5.61 16 15 C 0.12 4.08 6.00 86.38 0.52 4.60 16 16 N -0.70 -18.78 5.51 -466.13 -2.57 -21.34 16 17 C 0.57 17.21 7.77 86.74 0.67 17.89 16 18 O -0.58 -23.00 16.40 -3.95 -0.06 -23.07 16 19 C -0.20 -4.91 5.89 -20.01 -0.12 -5.03 16 20 C 0.18 3.53 10.69 85.18 0.91 4.44 16 21 N -0.49 -10.26 10.37 -191.76 -1.99 -12.24 16 22 C 0.25 5.24 8.45 133.91 1.13 6.37 16 23 N -0.57 -7.36 6.20 -183.79 -1.14 -8.50 16 24 H 0.45 2.31 8.96 -92.70 -0.83 1.48 16 25 C 0.31 4.20 8.08 137.89 1.11 5.31 16 26 C -0.08 -0.16 10.51 71.23 0.75 0.59 16 27 N -0.52 -11.83 11.29 -179.88 -2.03 -13.86 16 28 C -0.02 -0.58 7.23 39.46 0.29 -0.30 16 29 C 0.03 0.80 9.75 22.92 0.22 1.02 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.03 1.34 6.47 -2.39 -0.02 1.33 16 35 H 0.07 3.87 5.37 -2.39 -0.01 3.86 16 36 H 0.06 2.51 7.84 -2.38 -0.02 2.49 16 37 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 39 H 0.07 2.13 7.86 -2.39 -0.02 2.12 16 40 H 0.05 1.88 6.47 -2.39 -0.02 1.86 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.42 7.75 6.51 -92.70 -0.60 7.14 16 43 H 0.20 2.46 6.39 -2.91 -0.02 2.44 16 44 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.12 -0.44 8.14 -2.38 -0.02 -0.46 16 46 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.14 4.07 7.72 -2.91 -0.02 4.04 16 Total: -1.00 -80.46 394.50 0.23 -80.23 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -0.40 Total: 11.95 kcal Atomic # 6 Polarization: 29.55 SS G_CDS: 9.35 Total: 38.90 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -9.20 Total: -137.40 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.55 Total: -42.36 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.68 kcal Total: -80.46 0.23 -80.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332914138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.754 kcal (2) G-P(sol) polarization free energy of solvation -80.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds